data_7N81 # _model_server_result.job_id vo7kfs4F9mU94_i6l2LrZQ _model_server_result.datetime_utc '2025-02-16 15:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7N81 # _exptl.entry_id 7N81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-8-cyclopentyl-7-(cyclopentylmethyl)-2-[(3,5-dichloro-4-hydroxyphenyl)amino]-5-methyl-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.38 _cell.angle_gamma 90 _cell.entry_id 7N81 _cell.length_a 73.523 _cell.length_b 51.748 _cell.length_c 107.606 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 Cl2 N5 O2' _chem_comp.formula_weight 490.425 _chem_comp.id HKP _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-8-cyclopentyl-7-(cyclopentylmethyl)-2-[(3,5-dichloro-4-hydroxyphenyl)amino]-5-methyl-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF CBE HKP sing 150 n n CBF CBG HKP sing 151 n n CBE CBD HKP sing 152 n n CL2 CAN HKP sing 153 n n OBA CAO HKP sing 154 n n CBD CBC HKP sing 155 n n CBG CBC HKP sing 156 n n CAO CAN HKP doub 157 n y CAO CAP HKP sing 158 n y CAN CAM HKP sing 159 n y CBC N HKP sing 160 n n CL1 CAP HKP sing 161 n n CAP CAQ HKP doub 162 n y CAM CAL HKP doub 163 n y CD1 CAX HKP sing 164 n n CD1 CG HKP sing 165 n n N CA HKP sing 166 n n N C4 HKP sing 167 n n CAQ CAL HKP sing 168 n y CAX CAW HKP sing 169 n n CAL NAK HKP sing 170 n n CA CB HKP sing 171 n n CA C HKP sing 172 n n CB CG HKP sing 173 n n CG CD2 HKP sing 174 n n N3 C4 HKP doub 175 n y N3 C2 HKP sing 176 n y C4 C5 HKP sing 177 n y NAK C2 HKP sing 178 n n C O HKP doub 179 n n C NAJ HKP sing 180 n n CAW CD2 HKP sing 181 n n C2 N1 HKP doub 182 n y C5 NAJ HKP sing 183 n n C5 C6 HKP doub 184 n y NAJ CAR HKP sing 185 n n N1 C6 HKP sing 186 n y C6 H1 HKP sing 187 n n CD2 H2 HKP sing 188 n n CD2 H3 HKP sing 189 n n CAW H4 HKP sing 190 n n CAW H5 HKP sing 191 n n CAX H6 HKP sing 192 n n CAX H7 HKP sing 193 n n CD1 H8 HKP sing 194 n n CD1 H9 HKP sing 195 n n CG H10 HKP sing 196 n n CB H11 HKP sing 197 n n CB H12 HKP sing 198 n n CA H13 HKP sing 199 n n CAR H14 HKP sing 200 n n CAR H15 HKP sing 201 n n CAR H16 HKP sing 202 n n NAK H17 HKP sing 203 n n CAQ H18 HKP sing 204 n n OBA H19 HKP sing 205 n n CAM H20 HKP sing 206 n n CBC H21 HKP sing 207 n n CBG H22 HKP sing 208 n n CBG H23 HKP sing 209 n n CBF H24 HKP sing 210 n n CBF H25 HKP sing 211 n n CBE H26 HKP sing 212 n n CBE H27 HKP sing 213 n n CBD H28 HKP sing 214 n n CBD H29 HKP sing 215 n n # _atom_sites.entry_id 7N81 _atom_sites.fract_transf_matrix[1][1] 0.013601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001282 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HKP B 1 501 1 HKP DRG . D 3 HOH A 1 501 120 HOH HOH . D 3 HOH A 2 502 30 HOH HOH . D 3 HOH A 3 503 56 HOH HOH . D 3 HOH A 4 504 7 HOH HOH . D 3 HOH A 5 505 109 HOH HOH . D 3 HOH A 6 506 17 HOH HOH . D 3 HOH A 7 507 58 HOH HOH . D 3 HOH A 8 508 15 HOH HOH . D 3 HOH A 9 509 121 HOH HOH . D 3 HOH A 10 510 114 HOH HOH . D 3 HOH A 11 511 66 HOH HOH . D 3 HOH A 12 512 47 HOH HOH . D 3 HOH A 13 513 21 HOH HOH . D 3 HOH A 14 514 107 HOH HOH . D 3 HOH A 15 515 5 HOH HOH . D 3 HOH A 16 516 51 HOH HOH . D 3 HOH A 17 517 59 HOH HOH . D 3 HOH A 18 518 19 HOH HOH . D 3 HOH A 19 519 14 HOH HOH . D 3 HOH A 20 520 54 HOH HOH . D 3 HOH A 21 521 26 HOH HOH . D 3 HOH A 22 522 6 HOH HOH . D 3 HOH A 23 523 16 HOH HOH . D 3 HOH A 24 524 29 HOH HOH . D 3 HOH A 25 525 78 HOH HOH . D 3 HOH A 26 526 11 HOH HOH . D 3 HOH A 27 527 63 HOH HOH . D 3 HOH A 28 528 112 HOH HOH . D 3 HOH A 29 529 108 HOH HOH . D 3 HOH A 30 530 117 HOH HOH . D 3 HOH A 31 531 106 HOH HOH . D 3 HOH A 32 532 55 HOH HOH . D 3 HOH A 33 533 27 HOH HOH . D 3 HOH A 34 534 64 HOH HOH . D 3 HOH A 35 535 111 HOH HOH . D 3 HOH A 36 536 24 HOH HOH . D 3 HOH A 37 537 23 HOH HOH . D 3 HOH A 38 538 105 HOH HOH . D 3 HOH A 39 539 8 HOH HOH . D 3 HOH A 40 540 3 HOH HOH . D 3 HOH A 41 541 104 HOH HOH . D 3 HOH A 42 542 116 HOH HOH . D 3 HOH A 43 543 113 HOH HOH . D 3 HOH A 44 544 33 HOH HOH . D 3 HOH A 45 545 46 HOH HOH . D 3 HOH A 46 546 115 HOH HOH . D 3 HOH A 47 547 67 HOH HOH . D 3 HOH A 48 548 119 HOH HOH . D 3 HOH A 49 549 28 HOH HOH . D 3 HOH A 50 550 20 HOH HOH . D 3 HOH A 51 551 118 HOH HOH . D 3 HOH A 52 552 52 HOH HOH . D 3 HOH A 53 553 57 HOH HOH . D 3 HOH A 54 554 31 HOH HOH . D 3 HOH A 55 555 45 HOH HOH . D 3 HOH A 56 556 22 HOH HOH . D 3 HOH A 57 557 60 HOH HOH . D 3 HOH A 58 558 61 HOH HOH . D 3 HOH A 59 559 53 HOH HOH . D 3 HOH A 60 560 65 HOH HOH . D 3 HOH A 61 561 49 HOH HOH . D 3 HOH A 62 562 101 HOH HOH . D 3 HOH A 63 563 62 HOH HOH . D 3 HOH A 64 564 48 HOH HOH . D 3 HOH A 65 565 110 HOH HOH . D 3 HOH A 66 566 25 HOH HOH . D 3 HOH A 67 567 13 HOH HOH . E 3 HOH B 1 601 87 HOH HOH . E 3 HOH B 2 602 76 HOH HOH . E 3 HOH B 3 603 126 HOH HOH . E 3 HOH B 4 604 124 HOH HOH . E 3 HOH B 5 605 134 HOH HOH . E 3 HOH B 6 606 39 HOH HOH . E 3 HOH B 7 607 93 HOH HOH . E 3 HOH B 8 608 71 HOH HOH . E 3 HOH B 9 609 68 HOH HOH . E 3 HOH B 10 610 88 HOH HOH . E 3 HOH B 11 611 123 HOH HOH . E 3 HOH B 12 612 40 HOH HOH . E 3 HOH B 13 613 90 HOH HOH . E 3 HOH B 14 614 32 HOH HOH . E 3 HOH B 15 615 2 HOH HOH . E 3 HOH B 16 616 4 HOH HOH . E 3 HOH B 17 617 122 HOH HOH . E 3 HOH B 18 618 135 HOH HOH . E 3 HOH B 19 619 128 HOH HOH . E 3 HOH B 20 620 69 HOH HOH . E 3 HOH B 21 621 79 HOH HOH . E 3 HOH B 22 622 75 HOH HOH . E 3 HOH B 23 623 86 HOH HOH . E 3 HOH B 24 624 43 HOH HOH . E 3 HOH B 25 625 18 HOH HOH . E 3 HOH B 26 626 72 HOH HOH . E 3 HOH B 27 627 73 HOH HOH . E 3 HOH B 28 628 130 HOH HOH . E 3 HOH B 29 629 82 HOH HOH . E 3 HOH B 30 630 77 HOH HOH . E 3 HOH B 31 631 129 HOH HOH . E 3 HOH B 32 632 44 HOH HOH . E 3 HOH B 33 633 85 HOH HOH . E 3 HOH B 34 634 137 HOH HOH . E 3 HOH B 35 635 96 HOH HOH . E 3 HOH B 36 636 34 HOH HOH . E 3 HOH B 37 637 81 HOH HOH . E 3 HOH B 38 638 37 HOH HOH . E 3 HOH B 39 639 103 HOH HOH . E 3 HOH B 40 640 125 HOH HOH . E 3 HOH B 41 641 83 HOH HOH . E 3 HOH B 42 642 89 HOH HOH . E 3 HOH B 43 643 132 HOH HOH . E 3 HOH B 44 644 136 HOH HOH . E 3 HOH B 45 645 50 HOH HOH . E 3 HOH B 46 646 1 HOH HOH . E 3 HOH B 47 647 35 HOH HOH . E 3 HOH B 48 648 127 HOH HOH . E 3 HOH B 49 649 80 HOH HOH . E 3 HOH B 50 650 9 HOH HOH . E 3 HOH B 51 651 99 HOH HOH . E 3 HOH B 52 652 131 HOH HOH . E 3 HOH B 53 653 74 HOH HOH . E 3 HOH B 54 654 36 HOH HOH . E 3 HOH B 55 655 138 HOH HOH . E 3 HOH B 56 656 100 HOH HOH . E 3 HOH B 57 657 92 HOH HOH . E 3 HOH B 58 658 102 HOH HOH . E 3 HOH B 59 659 97 HOH HOH . E 3 HOH B 60 660 42 HOH HOH . E 3 HOH B 61 661 94 HOH HOH . E 3 HOH B 62 662 10 HOH HOH . E 3 HOH B 63 663 41 HOH HOH . E 3 HOH B 64 664 12 HOH HOH . E 3 HOH B 65 665 98 HOH HOH . E 3 HOH B 66 666 38 HOH HOH . E 3 HOH B 67 667 84 HOH HOH . E 3 HOH B 68 668 95 HOH HOH . E 3 HOH B 69 669 70 HOH HOH . E 3 HOH B 70 670 91 HOH HOH . E 3 HOH B 71 671 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HKP . . . C 2 64.266 2.284 7.611 1 74.4 ? C4 HKP 501 B 1 HETATM 2 C C5 HKP . . . C 2 63.851 2.638 8.904 1 74.65 ? C5 HKP 501 B 1 HETATM 3 C C6 HKP . . . C 2 63.972 1.685 9.922 1 73.97 ? C6 HKP 501 B 1 HETATM 4 N N1 HKP . . . C 2 64.504 0.427 9.647 1 66.59 ? N1 HKP 501 B 1 HETATM 5 N N3 HKP . . . C 2 64.785 1.057 7.42 1 70.81 ? N3 HKP 501 B 1 HETATM 6 C CD2 HKP . . . C 2 66.462 7.407 8.291 1 92.58 ? CD2 HKP 501 B 1 HETATM 7 C CAW HKP . . . C 2 66.014 8.882 8.253 1 85.02 ? CAW HKP 501 B 1 HETATM 8 C CAX HKP . . . C 2 65.296 9.036 6.896 1 88.56 ? CAX HKP 501 B 1 HETATM 9 C CD1 HKP . . . C 2 65.477 7.692 6.188 1 93.38 ? CD1 HKP 501 B 1 HETATM 10 C CG HKP . . . C 2 65.388 6.812 7.417 1 91.1 ? CG HKP 501 B 1 HETATM 11 C CB HKP . . . C 2 65.556 5.301 7.133 1 83.56 ? CB HKP 501 B 1 HETATM 12 C CA HKP . . . C 2 64.139 4.648 7.012 1 82.67 ? CA HKP 501 B 1 HETATM 13 C C HKP . . . C 2 63.36 4.83 8.21 1 80.81 ? C HKP 501 B 1 HETATM 14 O O HKP . . . C 2 62.73 5.88 8.43 1 80.14 ? O HKP 501 B 1 HETATM 15 N NAJ HKP . . . C 2 63.294 3.851 9.133 1 73.2 ? NAJ HKP 501 B 1 HETATM 16 C CAR HKP . . . C 2 62.451 4.076 10.337 1 69 ? CAR HKP 501 B 1 HETATM 17 C C2 HKP . . . C 2 64.893 0.129 8.398 1 70.61 ? C2 HKP 501 B 1 HETATM 18 N NAK HKP . . . C 2 65.417 -1.103 8.2 1 78.08 ? NAK HKP 501 B 1 HETATM 19 C CAL HKP . . . C 2 65.492 -1.724 7.006 1 83.75 ? CAL HKP 501 B 1 HETATM 20 C CAQ HKP . . . C 2 66.389 -2.795 6.882 1 90.38 ? CAQ HKP 501 B 1 HETATM 21 C CAP HKP . . . C 2 66.509 -3.492 5.673 1 99.9 ? CAP HKP 501 B 1 HETATM 22 CL CL1 HKP . . . C 2 67.648 -4.828 5.62 1 116.34 ? CL1 HKP 501 B 1 HETATM 23 C CAO HKP . . . C 2 65.708 -3.097 4.572 1 98.73 ? CAO HKP 501 B 1 HETATM 24 O OBA HKP . . . C 2 65.816 -3.763 3.383 1 90.79 ? OBA HKP 501 B 1 HETATM 25 C CAN HKP . . . C 2 64.799 -2.018 4.669 1 96.53 ? CAN HKP 501 B 1 HETATM 26 CL CL2 HKP . . . C 2 63.738 -1.438 3.339 1 85.26 ? CL2 HKP 501 B 1 HETATM 27 C CAM HKP . . . C 2 64.705 -1.356 5.898 1 92.23 ? CAM HKP 501 B 1 HETATM 28 N N HKP . . . C 2 64.181 3.186 6.599 1 81.56 ? N HKP 501 B 1 HETATM 29 C CBC HKP . . . C 2 64.174 2.725 5.137 1 88.09 ? CBC HKP 501 B 1 HETATM 30 C CBG HKP . . . C 2 65.584 2.683 4.519 1 89.4 ? CBG HKP 501 B 1 HETATM 31 C CBF HKP . . . C 2 65.457 3.356 3.152 1 97.78 ? CBF HKP 501 B 1 HETATM 32 C CBE HKP . . . C 2 64.328 4.358 3.314 1 94.98 ? CBE HKP 501 B 1 HETATM 33 C CBD HKP . . . C 2 63.322 3.573 4.156 1 93.72 ? CBD HKP 501 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 33 #