data_7N8C # _model_server_result.job_id B_u72ve_eeUF3qIyfAenKA _model_server_result.datetime_utc '2024-11-21 09:05:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7N8C # loop_ _exptl.entry_id _exptl.method 7N8C 'X-RAY DIFFRACTION' 7N8C 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 369.203 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.46 _cell.angle_gamma 90 _cell.entry_id 7N8C _cell.length_a 55.314 _cell.length_b 81.301 _cell.length_c 88.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.314 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 Cl2 N4 O3' _chem_comp.formula_weight 369.203 _chem_comp.id YD1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 YD1 doub 376 n n C22 C24 YD1 sing 377 n n C22 N21 YD1 sing 378 n n C24 C1 YD1 doub 379 n n N21 C19 YD1 sing 380 n n CL15 C14 YD1 sing 381 n n C1 N18 YD1 sing 382 n n C1 C2 YD1 sing 383 n n C19 N18 YD1 sing 384 n n C19 O20 YD1 doub 385 n n C2 O3 YD1 doub 386 n n C2 N4 YD1 sing 387 n n C14 C16 YD1 doub 388 n y C14 C13 YD1 sing 389 n y C16 C10 YD1 sing 390 n y C6 C5 YD1 sing 391 n n C6 N7 YD1 sing 392 n n N4 C5 YD1 sing 393 n n N4 C9 YD1 sing 394 n n C13 CL17 YD1 sing 395 n n C13 C12 YD1 doub 396 n y C8 N7 YD1 sing 397 n n C8 C9 YD1 sing 398 n n C10 N7 YD1 sing 399 n n C10 C11 YD1 doub 400 n y C12 C11 YD1 sing 401 n y C5 H1 YD1 sing 402 n n C5 H2 YD1 sing 403 n n C6 H3 YD1 sing 404 n n C6 H4 YD1 sing 405 n n C8 H5 YD1 sing 406 n n C8 H6 YD1 sing 407 n n C9 H7 YD1 sing 408 n n C9 H8 YD1 sing 409 n n C12 H9 YD1 sing 410 n n C11 H10 YD1 sing 411 n n C16 H11 YD1 sing 412 n n C24 H12 YD1 sing 413 n n N18 H13 YD1 sing 414 n n N21 H14 YD1 sing 415 n n # _atom_sites.entry_id 7N8C _atom_sites.fract_transf_matrix[1][1] 0.018079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YD1 A 1 401 401 YD1 M42 . C 3 DOD A 1 501 112 DOD DOD . C 3 DOD A 2 502 14 DOD DOD . C 3 DOD A 3 503 40 DOD DOD . C 3 DOD A 4 504 23 DOD DOD . C 3 DOD A 5 505 103 DOD DOD . C 3 DOD A 6 506 87 DOD DOD . C 3 DOD A 7 507 104 DOD DOD . C 3 DOD A 8 508 84 DOD DOD . C 3 DOD A 9 509 28 DOD DOD . C 3 DOD A 10 510 54 DOD DOD . C 3 DOD A 11 511 12 DOD DOD . C 3 DOD A 12 512 106 DOD DOD . C 3 DOD A 13 513 11 DOD DOD . C 3 DOD A 14 514 1 DOD DOD . C 3 DOD A 15 515 74 DOD DOD . C 3 DOD A 16 516 32 DOD DOD . C 3 DOD A 17 517 98 DOD DOD . C 3 DOD A 18 518 47 DOD DOD . C 3 DOD A 19 519 9 DOD DOD . C 3 DOD A 20 520 110 DOD DOD . C 3 DOD A 21 521 6 DOD DOD . C 3 DOD A 22 522 3 DOD DOD . C 3 DOD A 23 523 107 DOD DOD . C 3 DOD A 24 524 55 DOD DOD . C 3 DOD A 25 525 20 DOD DOD . C 3 DOD A 26 526 4 DOD DOD . C 3 DOD A 27 527 19 DOD DOD . C 3 DOD A 28 528 78 DOD DOD . C 3 DOD A 29 529 57 DOD DOD . C 3 DOD A 30 530 21 DOD DOD . C 3 DOD A 31 531 38 DOD DOD . C 3 DOD A 32 532 44 DOD DOD . C 3 DOD A 33 533 45 DOD DOD . C 3 DOD A 34 534 89 DOD DOD . C 3 DOD A 35 535 5 DOD DOD . C 3 DOD A 36 536 13 DOD DOD . C 3 DOD A 37 537 35 DOD DOD . C 3 DOD A 38 538 26 DOD DOD . C 3 DOD A 39 539 7 DOD DOD . C 3 DOD A 40 540 24 DOD DOD . C 3 DOD A 41 541 31 DOD DOD . C 3 DOD A 42 542 73 DOD DOD . C 3 DOD A 43 543 52 DOD DOD . C 3 DOD A 44 544 2 DOD DOD . C 3 DOD A 45 545 91 DOD DOD . C 3 DOD A 46 546 16 DOD DOD . C 3 DOD A 47 547 67 DOD DOD . C 3 DOD A 48 548 8 DOD DOD . C 3 DOD A 49 549 50 DOD DOD . C 3 DOD A 50 550 41 DOD DOD . C 3 DOD A 51 551 37 DOD DOD . C 3 DOD A 52 552 53 DOD DOD . C 3 DOD A 53 553 113 DOD DOD . C 3 DOD A 54 554 93 DOD DOD . C 3 DOD A 55 555 102 DOD DOD . C 3 DOD A 56 556 30 DOD DOD . C 3 DOD A 57 557 27 DOD DOD . C 3 DOD A 58 558 49 DOD DOD . C 3 DOD A 59 559 17 DOD DOD . C 3 DOD A 60 560 79 DOD DOD . C 3 DOD A 61 561 34 DOD DOD . C 3 DOD A 62 562 43 DOD DOD . C 3 DOD A 63 563 77 DOD DOD . C 3 DOD A 64 564 10 DOD DOD . C 3 DOD A 65 565 63 DOD DOD . C 3 DOD A 66 566 18 DOD DOD . C 3 DOD A 67 567 114 DOD DOD . C 3 DOD A 68 568 69 DOD DOD . C 3 DOD A 69 569 62 DOD DOD . C 3 DOD A 70 570 29 DOD DOD . C 3 DOD A 71 571 22 DOD DOD . C 3 DOD A 72 572 46 DOD DOD . C 3 DOD A 73 573 15 DOD DOD . C 3 DOD A 74 574 71 DOD DOD . C 3 DOD A 75 575 105 DOD DOD . C 3 DOD A 76 576 64 DOD DOD . C 3 DOD A 77 577 92 DOD DOD . C 3 DOD A 78 578 25 DOD DOD . C 3 DOD A 79 579 59 DOD DOD . C 3 DOD A 80 580 39 DOD DOD . C 3 DOD A 81 581 60 DOD DOD . C 3 DOD A 82 582 56 DOD DOD . C 3 DOD A 83 583 36 DOD DOD . C 3 DOD A 84 584 80 DOD DOD . C 3 DOD A 85 585 100 DOD DOD . C 3 DOD A 86 586 90 DOD DOD . C 3 DOD A 87 587 58 DOD DOD . C 3 DOD A 88 588 68 DOD DOD . C 3 DOD A 89 589 65 DOD DOD . C 3 DOD A 90 590 42 DOD DOD . C 3 DOD A 91 591 72 DOD DOD . C 3 DOD A 92 592 70 DOD DOD . C 3 DOD A 93 593 86 DOD DOD . C 3 DOD A 94 594 48 DOD DOD . C 3 DOD A 95 595 61 DOD DOD . C 3 DOD A 96 596 33 DOD DOD . C 3 DOD A 97 597 88 DOD DOD . C 3 DOD A 98 598 115 DOD DOD . C 3 DOD A 99 599 51 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YD1 . . . B 2 -15.204 -40.319 -16.626 1 35.02 ? C1 YD1 401 A 1 HETATM 2 C C2 YD1 . . . B 2 -14.723 -39.157 -17.435 1 32.77 ? C2 YD1 401 A 1 HETATM 3 C C5 YD1 . . . B 2 -12.626 -40.41 -18.138 1 34.15 ? C5 YD1 401 A 1 HETATM 4 C C6 YD1 . . . B 2 -11.229 -39.994 -17.699 1 35.58 ? C6 YD1 401 A 1 HETATM 5 C C8 YD1 . . . B 2 -11.585 -37.734 -18.501 1 35.66 ? C8 YD1 401 A 1 HETATM 6 C C9 YD1 . . . B 2 -13.044 -38.078 -18.825 1 34.8 ? C9 YD1 401 A 1 HETATM 7 C C12 YD1 . . . B 2 -7.273 -37.56 -19.332 1 32.99 ? C12 YD1 401 A 1 HETATM 8 C C14 YD1 . . . B 2 -7.102 -39.157 -17.459 1 31.72 ? C14 YD1 401 A 1 HETATM 9 C C10 YD1 . . . B 2 -9.326 -38.678 -18.5 1 34.98 ? C10 YD1 401 A 1 HETATM 10 C C11 YD1 . . . B 2 -8.668 -37.766 -19.396 1 33.98 ? C11 YD1 401 A 1 HETATM 11 C C13 YD1 . . . B 2 -6.463 -38.24 -18.388 1 31.23 ? C13 YD1 401 A 1 HETATM 12 C C16 YD1 . . . B 2 -8.501 -39.37 -17.524 1 31.47 ? C16 YD1 401 A 1 HETATM 13 C C19 YD1 . . . B 2 -16.443 -42.418 -16.833 1 38.67 ? C19 YD1 401 A 1 HETATM 14 C C22 YD1 . . . B 2 -15.497 -41.66 -14.637 1 35.07 ? C22 YD1 401 A 1 HETATM 15 C C24 YD1 . . . B 2 -14.986 -40.477 -15.301 1 34.27 ? C24 YD1 401 A 1 HETATM 16 N N18 YD1 . . . B 2 -15.909 -41.258 -17.363 1 37.58 ? N18 YD1 401 A 1 HETATM 17 N N21 YD1 . . . B 2 -16.194 -42.56 -15.468 1 36.14 ? N21 YD1 401 A 1 HETATM 18 N N4 YD1 . . . B 2 -13.53 -39.244 -18.062 1 34.92 ? N4 YD1 401 A 1 HETATM 19 N N7 YD1 . . . B 2 -10.743 -38.911 -18.588 1 35.9 ? N7 YD1 401 A 1 HETATM 20 O O20 YD1 . . . B 2 -17.063 -43.24 -17.515 1 42.53 ? O20 YD1 401 A 1 HETATM 21 O O23 YD1 . . . B 2 -15.362 -41.92 -13.449 1 31.7 ? O23 YD1 401 A 1 HETATM 22 O O3 YD1 . . . B 2 -15.459 -38.167 -17.462 1 35.85 ? O3 YD1 401 A 1 HETATM 23 CL CL15 YD1 . . . B 2 -6.192 -40.051 -16.238 1 18.84 ? CL15 YD1 401 A 1 HETATM 24 CL CL17 YD1 . . . B 2 -4.734 -37.936 -18.394 1 20.12 ? CL17 YD1 401 A 1 HETATM 25 H H1 YD1 . . . B 2 -12.985 -41.198 -17.463 1 34.71 ? H1 YD1 401 A 1 HETATM 26 H H2 YD1 . . . B 2 -12.622 -40.797 -19.171 1 33.97 ? H2 YD1 401 A 1 HETATM 27 H H3 YD1 . . . B 2 -11.275 -39.608 -16.666 1 35.23 ? H3 YD1 401 A 1 HETATM 28 H H4 YD1 . . . B 2 -10.565 -40.853 -17.746 1 35.83 ? H4 YD1 401 A 1 HETATM 29 H H5 YD1 . . . B 2 -11.271 -37.027 -19.266 1 35.87 ? H5 YD1 401 A 1 HETATM 30 H H6 YD1 . . . B 2 -11.515 -37.258 -17.52 1 35.95 ? H6 YD1 401 A 1 HETATM 31 H H7 YD1 . . . B 2 -13.687 -37.196 -18.549 1 35.04 ? H7 YD1 401 A 1 HETATM 32 H H8 YD1 . . . B 2 -13.129 -38.311 -19.906 1 35.63 ? H8 YD1 401 A 1 HETATM 33 H H9 YD1 . . . B 2 -6.813 -36.87 -20.029 1 33.2 ? H9 YD1 401 A 1 HETATM 34 H H10 YD1 . . . B 2 -9.228 -37.217 -20.148 1 34.94 ? H10 YD1 401 A 1 HETATM 35 H H11 YD1 . . . B 2 -8.952 -40.066 -16.823 1 34.93 ? H11 YD1 401 A 1 HETATM 36 H H12 YD1 . . . B 2 -14.435 -39.753 -14.73 1 34.48 ? H12 YD1 401 A 1 HETATM 37 D D13 YD1 . . . B 2 -16.058 -41.109 -18.362 1 40.54 ? D13 YD1 401 A 1 HETATM 38 D D14 YD1 . . . B 2 -16.564 -43.404 -15.036 1 38.31 ? D14 YD1 401 A 1 HETATM 39 D D39 YD1 . . . B 2 -10.793 -39.235 -19.539 1 38.55 ? D39 YD1 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #