data_7N8F
#
_model_server_result.job_id            aV6_am92owISDVNn70nCDA 
_model_server_result.datetime_utc      '2024-11-13 21:38:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7N8F 
#
_exptl.entry_id    7N8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              668.866 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Hexa Vinylpyrrolidone K15' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N8F 
_cell.length_a            89.887 
_cell.length_b            89.887 
_cell.length_c            133.89 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.887 89.887 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.887 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.887 0 
5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.887 0 0 
6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.887 0 
7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 89.887 89.887 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 E O03 R3J . A R3J 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 E O04 R3J . A R3J 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 E O02 R3J . A R3J 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 E O03 R3J . A R3J 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc11 C MN MN . A MN 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc12 C MN MN . A MN 202 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
#
_chem_comp.formula           'C36 H56 N6 O6' 
_chem_comp.formula_weight    668.866 
_chem_comp.id                QQ4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Hexa Vinylpyrrolidone K15' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 QQ4 sing 277 n n 
C21 N02 QQ4 sing 278 n n 
C20 C19 QQ4 sing 279 n n 
C19 C42 QQ4 sing 280 n n 
N02 C12 QQ4 sing 281 n n 
N02 C42 QQ4 sing 282 n n 
C12 C11 QQ4 sing 283 n n 
C42 O05 QQ4 doub 284 n n 
C38 C41 QQ4 sing 285 n n 
C38 N07 QQ4 sing 286 n n 
C41 C40 QQ4 sing 287 n n 
C10 C09 QQ4 sing 288 n n 
C11 C01 QQ4 sing 289 n n 
C40 C39 QQ4 sing 290 n n 
N07 C09 QQ4 sing 291 n n 
N07 C39 QQ4 sing 292 n n 
C01 C02 QQ4 sing 293 n n 
C01 N03 QQ4 sing 294 n n 
C08 C09 QQ4 sing 295 n n 
C08 C07 QQ4 sing 296 n n 
C02 C03 QQ4 sing 297 n n 
C39 O07 QQ4 doub 298 n n 
C26 C27 QQ4 sing 299 n n 
C26 N04 QQ4 sing 300 n n 
C22 N03 QQ4 sing 301 n n 
C22 C25 QQ4 sing 302 n n 
N03 C23 QQ4 sing 303 n n 
C06 C07 QQ4 sing 304 n n 
C06 C05 QQ4 sing 305 n n 
C07 N06 QQ4 sing 306 n n 
C27 C28 QQ4 sing 307 n n 
C03 N04 QQ4 sing 308 n n 
C03 C04 QQ4 sing 309 n n 
C25 C24 QQ4 sing 310 n n 
N04 C29 QQ4 sing 311 n n 
C04 C05 QQ4 sing 312 n n 
O04 C30 QQ4 doub 313 n n 
C23 O02 QQ4 doub 314 n n 
C23 C24 QQ4 sing 315 n n 
C05 N05 QQ4 sing 316 n n 
N06 C34 QQ4 sing 317 n n 
N06 C37 QQ4 sing 318 n n 
C34 C35 QQ4 sing 319 n n 
C28 C29 QQ4 sing 320 n n 
C29 O03 QQ4 doub 321 n n 
C30 N05 QQ4 sing 322 n n 
C30 C31 QQ4 sing 323 n n 
N05 C33 QQ4 sing 324 n n 
C37 O06 QQ4 doub 325 n n 
C37 C36 QQ4 sing 326 n n 
C35 C36 QQ4 sing 327 n n 
C31 C32 QQ4 sing 328 n n 
C33 C32 QQ4 sing 329 n n 
C12 H1 QQ4 sing 330 n n 
C12 H2 QQ4 sing 331 n n 
C11 H3 QQ4 sing 332 n n 
C11 H4 QQ4 sing 333 n n 
C10 H5 QQ4 sing 334 n n 
C10 H6 QQ4 sing 335 n n 
C10 H7 QQ4 sing 336 n n 
C01 H8 QQ4 sing 337 n n 
C02 H9 QQ4 sing 338 n n 
C02 H10 QQ4 sing 339 n n 
C03 H11 QQ4 sing 340 n n 
C04 H12 QQ4 sing 341 n n 
C04 H13 QQ4 sing 342 n n 
C05 H14 QQ4 sing 343 n n 
C06 H15 QQ4 sing 344 n n 
C06 H16 QQ4 sing 345 n n 
C07 H17 QQ4 sing 346 n n 
C08 H18 QQ4 sing 347 n n 
C08 H19 QQ4 sing 348 n n 
C09 H20 QQ4 sing 349 n n 
C19 H21 QQ4 sing 350 n n 
C19 H22 QQ4 sing 351 n n 
C20 H23 QQ4 sing 352 n n 
C20 H24 QQ4 sing 353 n n 
C21 H25 QQ4 sing 354 n n 
C21 H26 QQ4 sing 355 n n 
C22 H27 QQ4 sing 356 n n 
C22 H28 QQ4 sing 357 n n 
C24 H29 QQ4 sing 358 n n 
C24 H30 QQ4 sing 359 n n 
C25 H31 QQ4 sing 360 n n 
C25 H32 QQ4 sing 361 n n 
C26 H33 QQ4 sing 362 n n 
C26 H34 QQ4 sing 363 n n 
C27 H35 QQ4 sing 364 n n 
C27 H36 QQ4 sing 365 n n 
C28 H37 QQ4 sing 366 n n 
C28 H38 QQ4 sing 367 n n 
C31 H39 QQ4 sing 368 n n 
C31 H40 QQ4 sing 369 n n 
C32 H41 QQ4 sing 370 n n 
C32 H42 QQ4 sing 371 n n 
C33 H43 QQ4 sing 372 n n 
C33 H44 QQ4 sing 373 n n 
C34 H45 QQ4 sing 374 n n 
C34 H46 QQ4 sing 375 n n 
C35 H47 QQ4 sing 376 n n 
C35 H48 QQ4 sing 377 n n 
C36 H49 QQ4 sing 378 n n 
C36 H50 QQ4 sing 379 n n 
C38 H51 QQ4 sing 380 n n 
C38 H52 QQ4 sing 381 n n 
C40 H53 QQ4 sing 382 n n 
C40 H54 QQ4 sing 383 n n 
C41 H55 QQ4 sing 384 n n 
C41 H56 QQ4 sing 385 n n 
#
_atom_sites.entry_id                     7N8F 
_atom_sites.fract_transf_matrix[1][1]    0.011125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011125 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 QQ4 A 1 203 401 QQ4 PVP . 
E 4 R3J A 1 204 402 R3J 288 . 
F 5 SO4 A 1 205 1 SO4 SO4 . 
G 5 SO4 A 1 206 2 SO4 SO4 . 
H 6 HOH A 1 301 5 HOH HOH . 
H 6 HOH A 2 302 13 HOH HOH . 
H 6 HOH A 3 303 8 HOH HOH . 
H 6 HOH A 4 304 1 HOH HOH . 
H 6 HOH A 5 305 9 HOH HOH . 
H 6 HOH A 6 306 3 HOH HOH . 
H 6 HOH A 7 307 2 HOH HOH . 
H 6 HOH A 8 308 11 HOH HOH . 
H 6 HOH A 9 309 4 HOH HOH . 
H 6 HOH A 10 310 12 HOH HOH . 
H 6 HOH A 11 311 6 HOH HOH . 
H 6 HOH A 12 312 10 HOH HOH . 
H 6 HOH A 13 313 7 HOH HOH . 
H 6 HOH A 14 314 15 HOH HOH . 
H 6 HOH A 15 315 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 QQ4 . . . D 3 42.798 36.213 12.162 1 110.89 ? C11 QQ4 203 A 1 
HETATM 2 C C10 QQ4 . . . D 3 48.496 31.3 11.615 1 124.14 ? C10 QQ4 203 A 1 
HETATM 3 C C01 QQ4 . . . D 3 41.837 35.134 12.645 1 118.56 ? C01 QQ4 203 A 1 
HETATM 4 C C02 QQ4 . . . D 3 42.128 33.829 11.904 1 109.96 ? C02 QQ4 203 A 1 
HETATM 5 C C03 QQ4 . . . D 3 42.197 32.65 12.874 1 107.17 ? C03 QQ4 203 A 1 
HETATM 6 C C04 QQ4 . . . D 3 42.78 31.452 12.119 1 109.61 ? C04 QQ4 203 A 1 
HETATM 7 C C05 QQ4 . . . D 3 43.992 30.837 12.825 1 111.27 ? C05 QQ4 203 A 1 
HETATM 8 C C06 QQ4 . . . D 3 44.616 29.817 11.857 1 116.99 ? C06 QQ4 203 A 1 
HETATM 9 C C07 QQ4 . . . D 3 46.144 29.832 11.781 1 120.7 ? C07 QQ4 203 A 1 
HETATM 10 C C08 QQ4 . . . D 3 46.544 30.273 10.37 1 118.22 ? C08 QQ4 203 A 1 
HETATM 11 C C09 QQ4 . . . D 3 48 30.753 10.274 1 121.91 ? C09 QQ4 203 A 1 
HETATM 12 C C22 QQ4 . . . D 3 39.479 35.858 13.419 1 119.25 ? C22 QQ4 203 A 1 
HETATM 13 C C23 QQ4 . . . D 3 39.846 35.741 11.076 1 123.94 ? C23 QQ4 203 A 1 
HETATM 14 C C24 QQ4 . . . D 3 38.4 36.188 11.294 1 123.52 ? C24 QQ4 203 A 1 
HETATM 15 C C25 QQ4 . . . D 3 38.404 36.687 12.729 1 118.14 ? C25 QQ4 203 A 1 
HETATM 16 C C26 QQ4 . . . D 3 40.471 32.375 14.762 1 111.62 ? C26 QQ4 203 A 1 
HETATM 17 C C27 QQ4 . . . D 3 38.94 32.391 14.766 1 106.58 ? C27 QQ4 203 A 1 
HETATM 18 C C28 QQ4 . . . D 3 38.55 31.686 13.471 1 100.03 ? C28 QQ4 203 A 1 
HETATM 19 C C29 QQ4 . . . D 3 39.74 31.917 12.557 1 113.97 ? C29 QQ4 203 A 1 
HETATM 20 C C30 QQ4 . . . D 3 45.504 32.983 12.541 1 132.75 ? C30 QQ4 203 A 1 
HETATM 21 C C31 QQ4 . . . D 3 46.396 33.771 13.48 1 124.29 ? C31 QQ4 203 A 1 
HETATM 22 C C32 QQ4 . . . D 3 46.674 32.815 14.609 1 114.14 ? C32 QQ4 203 A 1 
HETATM 23 C C33 QQ4 . . . D 3 45.42 31.95 14.683 1 101.38 ? C33 QQ4 203 A 1 
HETATM 24 C C34 QQ4 . . . D 3 46.183 27.264 11.293 1 96.56 ? C34 QQ4 203 A 1 
HETATM 25 C C35 QQ4 . . . D 3 46.635 26.096 12.178 1 73.13 ? C35 QQ4 203 A 1 
HETATM 26 C C36 QQ4 . . . D 3 47.832 26.602 12.911 1 83.48 ? C36 QQ4 203 A 1 
HETATM 27 C C37 QQ4 . . . D 3 47.633 28.086 13.008 1 91.84 ? C37 QQ4 203 A 1 
HETATM 28 C C38 QQ4 . . . D 3 49.937 29.058 10.6 1 108.51 ? C38 QQ4 203 A 1 
HETATM 29 C C39 QQ4 . . . D 3 48.779 29.007 8.529 1 128.12 ? C39 QQ4 203 A 1 
HETATM 30 C C40 QQ4 . . . D 3 49.858 27.935 8.477 1 109.32 ? C40 QQ4 203 A 1 
HETATM 31 C C41 QQ4 . . . D 3 50.813 28.334 9.581 1 112.6 ? C41 QQ4 203 A 1 
HETATM 32 N N03 QQ4 . . . D 3 40.467 35.555 12.39 1 124.51 ? N03 QQ4 203 A 1 
HETATM 33 N N04 QQ4 . . . D 3 40.87 32.332 13.363 1 114.34 ? N04 QQ4 203 A 1 
HETATM 34 N N05 QQ4 . . . D 3 44.921 31.863 13.3 1 119.76 ? N05 QQ4 203 A 1 
HETATM 35 N N06 QQ4 . . . D 3 46.629 28.487 12.018 1 100 ? N06 QQ4 203 A 1 
HETATM 36 N N07 QQ4 . . . D 3 48.856 29.67 9.827 1 122.69 ? N07 QQ4 203 A 1 
HETATM 37 O O02 QQ4 . . . D 3 40.364 35.582 10.022 1 130.17 ? O02 QQ4 203 A 1 
HETATM 38 O O03 QQ4 . . . D 3 39.73 31.783 11.38 1 128.52 ? O03 QQ4 203 A 1 
HETATM 39 O O04 QQ4 . . . D 3 45.321 33.226 11.395 1 130.07 ? O04 QQ4 203 A 1 
HETATM 40 O O06 QQ4 . . . D 3 48.199 28.812 13.757 1 86.63 ? O06 QQ4 203 A 1 
HETATM 41 O O07 QQ4 . . . D 3 48.015 29.26 7.663 1 127.22 ? O07 QQ4 203 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#