data_7N8L # _model_server_result.job_id Qi6uqGqZMRmA-hH6NFOpmg _model_server_result.datetime_utc '2024-11-23 23:49:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":305}' # _entry.id 7N8L # _exptl.entry_id 7N8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.506 _cell.angle_gamma 90 _cell.entry_id 7N8L _cell.length_a 134.746 _cell.length_b 63.474 _cell.length_c 79.868 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 93 A HIS 93 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OD1 ASP 114 A ASP 114 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 C O2A COA . A COA 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 C O3A COA . A COA 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 E MG MG . A MG 303 1_555 O O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 E MG MG . A MG 303 1_555 O O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 E MG MG . A MG 303 1_555 O O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 E MG MG . A MG 303 1_555 O O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 F MG MG . A MG 304 1_555 O O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 F MG MG . A MG 304 1_555 O O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc11 F MG MG . A MG 304 1_555 O O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc12 B O HIS 93 B HIS 93 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc13 B OD1 ASP 114 B ASP 114 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc14 I O1A COA . B COA 301 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc15 I O3A COA . B COA 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc16 K MG MG . B MG 303 1_555 P O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc17 K MG MG . B MG 303 1_555 P O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc18 K MG MG . B MG 303 1_555 P O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc19 K MG MG . B MG 303 1_555 P O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc20 L MG MG . B MG 304 1_555 P O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc21 L MG MG . B MG 304 1_555 P O HOH . B HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc22 L MG MG . B MG 304 1_555 P O HOH . B HOH 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 213 n n S C1 DMS sing 214 n n S C2 DMS sing 215 n n C1 H11 DMS sing 216 n n C1 H12 DMS sing 217 n n C1 H13 DMS sing 218 n n C2 H21 DMS sing 219 n n C2 H22 DMS sing 220 n n C2 H23 DMS sing 221 n n # _atom_sites.entry_id 7N8L _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004913 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 301 2 COA COA . D 3 10I A 1 302 1 10I PGL . E 4 MG A 1 303 3 MG MG . F 4 MG A 1 304 4 MG MG . G 5 GOL A 1 305 2 GOL GOL . H 5 GOL A 1 306 3 GOL GOL . I 2 COA B 1 301 1 COA COA . J 3 10I B 1 302 2 10I PGL . K 4 MG B 1 303 1 MG MG . L 4 MG B 1 304 2 MG MG . M 6 DMS B 1 305 1 DMS DMS . N 5 GOL B 1 306 1 GOL GOL . O 7 HOH A 1 401 165 HOH HOH . O 7 HOH A 2 402 92 HOH HOH . O 7 HOH A 3 403 216 HOH HOH . O 7 HOH A 4 404 143 HOH HOH . O 7 HOH A 5 405 52 HOH HOH . O 7 HOH A 6 406 167 HOH HOH . O 7 HOH A 7 407 196 HOH HOH . O 7 HOH A 8 408 44 HOH HOH . O 7 HOH A 9 409 78 HOH HOH . O 7 HOH A 10 410 187 HOH HOH . O 7 HOH A 11 411 10 HOH HOH . O 7 HOH A 12 412 105 HOH HOH . O 7 HOH A 13 413 34 HOH HOH . O 7 HOH A 14 414 32 HOH HOH . O 7 HOH A 15 415 169 HOH HOH . O 7 HOH A 16 416 220 HOH HOH . O 7 HOH A 17 417 69 HOH HOH . O 7 HOH A 18 418 152 HOH HOH . O 7 HOH A 19 419 98 HOH HOH . O 7 HOH A 20 420 24 HOH HOH . O 7 HOH A 21 421 142 HOH HOH . O 7 HOH A 22 422 190 HOH HOH . O 7 HOH A 23 423 15 HOH HOH . O 7 HOH A 24 424 166 HOH HOH . O 7 HOH A 25 425 109 HOH HOH . O 7 HOH A 26 426 168 HOH HOH . O 7 HOH A 27 427 67 HOH HOH . O 7 HOH A 28 428 41 HOH HOH . O 7 HOH A 29 429 140 HOH HOH . O 7 HOH A 30 430 93 HOH HOH . O 7 HOH A 31 431 197 HOH HOH . O 7 HOH A 32 432 90 HOH HOH . O 7 HOH A 33 433 132 HOH HOH . O 7 HOH A 34 434 192 HOH HOH . O 7 HOH A 35 435 65 HOH HOH . O 7 HOH A 36 436 25 HOH HOH . O 7 HOH A 37 437 26 HOH HOH . O 7 HOH A 38 438 194 HOH HOH . O 7 HOH A 39 439 12 HOH HOH . O 7 HOH A 40 440 11 HOH HOH . O 7 HOH A 41 441 66 HOH HOH . O 7 HOH A 42 442 214 HOH HOH . O 7 HOH A 43 443 119 HOH HOH . O 7 HOH A 44 444 123 HOH HOH . O 7 HOH A 45 445 74 HOH HOH . O 7 HOH A 46 446 46 HOH HOH . O 7 HOH A 47 447 191 HOH HOH . O 7 HOH A 48 448 148 HOH HOH . O 7 HOH A 49 449 134 HOH HOH . O 7 HOH A 50 450 40 HOH HOH . O 7 HOH A 51 451 122 HOH HOH . O 7 HOH A 52 452 39 HOH HOH . O 7 HOH A 53 453 131 HOH HOH . O 7 HOH A 54 454 27 HOH HOH . O 7 HOH A 55 455 136 HOH HOH . O 7 HOH A 56 456 5 HOH HOH . O 7 HOH A 57 457 22 HOH HOH . O 7 HOH A 58 458 170 HOH HOH . O 7 HOH A 59 459 79 HOH HOH . O 7 HOH A 60 460 57 HOH HOH . O 7 HOH A 61 461 124 HOH HOH . O 7 HOH A 62 462 29 HOH HOH . O 7 HOH A 63 463 203 HOH HOH . O 7 HOH A 64 464 51 HOH HOH . O 7 HOH A 65 465 116 HOH HOH . O 7 HOH A 66 466 85 HOH HOH . O 7 HOH A 67 467 138 HOH HOH . O 7 HOH A 68 468 53 HOH HOH . O 7 HOH A 69 469 115 HOH HOH . O 7 HOH A 70 470 186 HOH HOH . O 7 HOH A 71 471 59 HOH HOH . O 7 HOH A 72 472 60 HOH HOH . O 7 HOH A 73 473 35 HOH HOH . O 7 HOH A 74 474 50 HOH HOH . O 7 HOH A 75 475 198 HOH HOH . O 7 HOH A 76 476 64 HOH HOH . O 7 HOH A 77 477 189 HOH HOH . O 7 HOH A 78 478 133 HOH HOH . O 7 HOH A 79 479 219 HOH HOH . O 7 HOH A 80 480 158 HOH HOH . O 7 HOH A 81 481 202 HOH HOH . O 7 HOH A 82 482 33 HOH HOH . O 7 HOH A 83 483 212 HOH HOH . O 7 HOH A 84 484 207 HOH HOH . O 7 HOH A 85 485 144 HOH HOH . O 7 HOH A 86 486 150 HOH HOH . O 7 HOH A 87 487 208 HOH HOH . O 7 HOH A 88 488 104 HOH HOH . O 7 HOH A 89 489 153 HOH HOH . P 7 HOH B 1 401 137 HOH HOH . P 7 HOH B 2 402 20 HOH HOH . P 7 HOH B 3 403 163 HOH HOH . P 7 HOH B 4 404 76 HOH HOH . P 7 HOH B 5 405 48 HOH HOH . P 7 HOH B 6 406 221 HOH HOH . P 7 HOH B 7 407 56 HOH HOH . P 7 HOH B 8 408 68 HOH HOH . P 7 HOH B 9 409 80 HOH HOH . P 7 HOH B 10 410 160 HOH HOH . P 7 HOH B 11 411 77 HOH HOH . P 7 HOH B 12 412 14 HOH HOH . P 7 HOH B 13 413 36 HOH HOH . P 7 HOH B 14 414 145 HOH HOH . P 7 HOH B 15 415 161 HOH HOH . P 7 HOH B 16 416 21 HOH HOH . P 7 HOH B 17 417 42 HOH HOH . P 7 HOH B 18 418 61 HOH HOH . P 7 HOH B 19 419 102 HOH HOH . P 7 HOH B 20 420 91 HOH HOH . P 7 HOH B 21 421 84 HOH HOH . P 7 HOH B 22 422 97 HOH HOH . P 7 HOH B 23 423 43 HOH HOH . P 7 HOH B 24 424 19 HOH HOH . P 7 HOH B 25 425 130 HOH HOH . P 7 HOH B 26 426 147 HOH HOH . P 7 HOH B 27 427 94 HOH HOH . P 7 HOH B 28 428 139 HOH HOH . P 7 HOH B 29 429 103 HOH HOH . P 7 HOH B 30 430 87 HOH HOH . P 7 HOH B 31 431 9 HOH HOH . P 7 HOH B 32 432 54 HOH HOH . P 7 HOH B 33 433 62 HOH HOH . P 7 HOH B 34 434 86 HOH HOH . P 7 HOH B 35 435 82 HOH HOH . P 7 HOH B 36 436 2 HOH HOH . P 7 HOH B 37 437 70 HOH HOH . P 7 HOH B 38 438 55 HOH HOH . P 7 HOH B 39 439 38 HOH HOH . P 7 HOH B 40 440 16 HOH HOH . P 7 HOH B 41 441 127 HOH HOH . P 7 HOH B 42 442 6 HOH HOH . P 7 HOH B 43 443 118 HOH HOH . P 7 HOH B 44 444 81 HOH HOH . P 7 HOH B 45 445 23 HOH HOH . P 7 HOH B 46 446 47 HOH HOH . P 7 HOH B 47 447 195 HOH HOH . P 7 HOH B 48 448 13 HOH HOH . P 7 HOH B 49 449 95 HOH HOH . P 7 HOH B 50 450 3 HOH HOH . P 7 HOH B 51 451 125 HOH HOH . P 7 HOH B 52 452 89 HOH HOH . P 7 HOH B 53 453 141 HOH HOH . P 7 HOH B 54 454 45 HOH HOH . P 7 HOH B 55 455 4 HOH HOH . P 7 HOH B 56 456 128 HOH HOH . P 7 HOH B 57 457 18 HOH HOH . P 7 HOH B 58 458 83 HOH HOH . P 7 HOH B 59 459 63 HOH HOH . P 7 HOH B 60 460 88 HOH HOH . P 7 HOH B 61 461 113 HOH HOH . P 7 HOH B 62 462 1 HOH HOH . P 7 HOH B 63 463 146 HOH HOH . P 7 HOH B 64 464 17 HOH HOH . P 7 HOH B 65 465 149 HOH HOH . P 7 HOH B 66 466 31 HOH HOH . P 7 HOH B 67 467 75 HOH HOH . P 7 HOH B 68 468 112 HOH HOH . P 7 HOH B 69 469 58 HOH HOH . P 7 HOH B 70 470 162 HOH HOH . P 7 HOH B 71 471 71 HOH HOH . P 7 HOH B 72 472 121 HOH HOH . P 7 HOH B 73 473 7 HOH HOH . P 7 HOH B 74 474 49 HOH HOH . P 7 HOH B 75 475 111 HOH HOH . P 7 HOH B 76 476 188 HOH HOH . P 7 HOH B 77 477 164 HOH HOH . P 7 HOH B 78 478 154 HOH HOH . P 7 HOH B 79 479 100 HOH HOH . P 7 HOH B 80 480 107 HOH HOH . P 7 HOH B 81 481 222 HOH HOH . P 7 HOH B 82 482 99 HOH HOH . P 7 HOH B 83 483 151 HOH HOH . P 7 HOH B 84 484 117 HOH HOH . P 7 HOH B 85 485 193 HOH HOH . P 7 HOH B 86 486 37 HOH HOH . P 7 HOH B 87 487 215 HOH HOH . P 7 HOH B 88 488 28 HOH HOH . P 7 HOH B 89 489 204 HOH HOH . P 7 HOH B 90 490 213 HOH HOH . P 7 HOH B 91 491 72 HOH HOH . P 7 HOH B 92 492 114 HOH HOH . P 7 HOH B 93 493 8 HOH HOH . P 7 HOH B 94 494 201 HOH HOH . P 7 HOH B 95 495 120 HOH HOH . P 7 HOH B 96 496 73 HOH HOH . P 7 HOH B 97 497 210 HOH HOH . P 7 HOH B 98 498 110 HOH HOH . P 7 HOH B 99 499 108 HOH HOH . P 7 HOH B 100 500 156 HOH HOH . P 7 HOH B 101 501 96 HOH HOH . P 7 HOH B 102 502 211 HOH HOH . P 7 HOH B 103 503 129 HOH HOH . P 7 HOH B 104 504 205 HOH HOH . P 7 HOH B 105 505 159 HOH HOH . P 7 HOH B 106 506 209 HOH HOH . P 7 HOH B 107 507 218 HOH HOH . P 7 HOH B 108 508 206 HOH HOH . P 7 HOH B 109 509 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . M 6 12.898 35.242 9.517 1 79.06 ? S DMS 305 B 1 HETATM 2 O O DMS . . . M 6 12.903 35.454 10.997 1 63.01 ? O DMS 305 B 1 HETATM 3 C C1 DMS . . . M 6 12.115 36.663 8.707 1 56.31 ? C1 DMS 305 B 1 HETATM 4 C C2 DMS . . . M 6 14.586 35.404 8.872 1 49.95 ? C2 DMS 305 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #