data_7N9K # _model_server_result.job_id 52kIEZh87FF2MDSm8pZiNw _model_server_result.datetime_utc '2025-02-28 21:03:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7N9K # _exptl.entry_id 7N9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N9K _cell.length_a 106.577 _cell.length_b 106.577 _cell.length_c 89.597 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -106.577 0 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -53.2885 -53.2885 0 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 53.2885 -53.2885 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 96 A THR 96 1_555 H K K . A K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A O THR 96 A THR 96 1_555 H K K . A K 507 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A O THR 96 A THR 96 1_555 I K K . A K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc4 A OG1 THR 96 A THR 96 1_555 I K K . A K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc5 A O THR 96 A THR 96 1_555 I K K . A K 508 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc6 A OG1 THR 96 A THR 96 1_555 I K K . A K 508 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc7 A O ILE 97 A ILE 97 1_555 H K K . A K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc8 A O ILE 97 A ILE 97 1_555 H K K . A K 507 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc9 A O GLY 98 A GLY 98 1_555 G K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc10 A O GLY 98 A GLY 98 1_555 G K K . A K 506 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc11 A O TYR 99 A TYR 99 1_555 G K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc12 A O TYR 99 A TYR 99 1_555 G K K . A K 506 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 262 n n C1 O3P PCW sing 263 n n C1 H11 PCW sing 264 n n C1 H12 PCW sing 265 n n C2 C3 PCW sing 266 n n C2 O2 PCW sing 267 n n C2 H2 PCW sing 268 n n C3 O3 PCW sing 269 n n C3 H31 PCW sing 270 n n C3 H32 PCW sing 271 n n C4 C5 PCW sing 272 n n C4 O4P PCW sing 273 n n C4 H41 PCW sing 274 n n C4 H42 PCW sing 275 n n C5 N PCW sing 276 n n C5 H51 PCW sing 277 n n C5 H52 PCW sing 278 n n C6 N PCW sing 279 n n C6 H61 PCW sing 280 n n C6 H62 PCW sing 281 n n C6 H63 PCW sing 282 n n C7 N PCW sing 283 n n C7 H71 PCW sing 284 n n C7 H72 PCW sing 285 n n C7 H73 PCW sing 286 n n C8 N PCW sing 287 n n C8 H81 PCW sing 288 n n C8 H82 PCW sing 289 n n C8 H83 PCW sing 290 n n C11 C12 PCW sing 291 n n C11 O3 PCW sing 292 n n C11 O11 PCW doub 293 n n C12 C13 PCW sing 294 n n C12 H121 PCW sing 295 n n C12 H122 PCW sing 296 n n C13 C14 PCW sing 297 n n C13 H131 PCW sing 298 n n C13 H132 PCW sing 299 n n C14 C15 PCW sing 300 n n C14 H141 PCW sing 301 n n C14 H142 PCW sing 302 n n C15 C16 PCW sing 303 n n C15 H151 PCW sing 304 n n C15 H152 PCW sing 305 n n C16 C17 PCW sing 306 n n C16 H161 PCW sing 307 n n C16 H162 PCW sing 308 n n C17 C18 PCW sing 309 n n C17 H171 PCW sing 310 n n C17 H172 PCW sing 311 n n C18 C19 PCW sing 312 n n C18 H181 PCW sing 313 n n C18 H182 PCW sing 314 n n C19 C20 PCW doub 315 z n C19 H19 PCW sing 316 n n C20 C21 PCW sing 317 n n C20 H20 PCW sing 318 n n C21 C22 PCW sing 319 n n C21 H211 PCW sing 320 n n C21 H212 PCW sing 321 n n C22 C23 PCW sing 322 n n C22 H221 PCW sing 323 n n C22 H222 PCW sing 324 n n C23 C24 PCW sing 325 n n C23 H231 PCW sing 326 n n C23 H232 PCW sing 327 n n C24 C25 PCW sing 328 n n C24 H241 PCW sing 329 n n C24 H242 PCW sing 330 n n C25 C26 PCW sing 331 n n C25 H251 PCW sing 332 n n C25 H252 PCW sing 333 n n C26 C27 PCW sing 334 n n C26 H261 PCW sing 335 n n C26 H262 PCW sing 336 n n C27 C28 PCW sing 337 n n C27 H271 PCW sing 338 n n C27 H272 PCW sing 339 n n C28 H281 PCW sing 340 n n C28 H282 PCW sing 341 n n C28 H283 PCW sing 342 n n C31 C32 PCW sing 343 n n C31 O2 PCW sing 344 n n C31 O31 PCW doub 345 n n C32 C33 PCW sing 346 n n C32 H321 PCW sing 347 n n C32 H322 PCW sing 348 n n C33 C34 PCW sing 349 n n C33 H331 PCW sing 350 n n C33 H332 PCW sing 351 n n C34 C35 PCW sing 352 n n C34 H341 PCW sing 353 n n C34 H342 PCW sing 354 n n C35 C36 PCW sing 355 n n C35 H351 PCW sing 356 n n C35 H352 PCW sing 357 n n C36 C37 PCW sing 358 n n C36 H361 PCW sing 359 n n C36 H362 PCW sing 360 n n C37 C38 PCW sing 361 n n C37 H371 PCW sing 362 n n C37 H372 PCW sing 363 n n C38 C39 PCW sing 364 n n C38 H381 PCW sing 365 n n C38 H382 PCW sing 366 n n C39 C40 PCW doub 367 z n C39 H39 PCW sing 368 n n C40 C41 PCW sing 369 n n C40 H40 PCW sing 370 n n C41 C42 PCW sing 371 n n C41 H411 PCW sing 372 n n C41 H412 PCW sing 373 n n C42 C43 PCW sing 374 n n C42 H421 PCW sing 375 n n C42 H422 PCW sing 376 n n C43 C44 PCW sing 377 n n C43 H431 PCW sing 378 n n C43 H432 PCW sing 379 n n C44 C45 PCW sing 380 n n C44 H441 PCW sing 381 n n C44 H442 PCW sing 382 n n C45 C46 PCW sing 383 n n C45 H451 PCW sing 384 n n C45 H452 PCW sing 385 n n C46 C47 PCW sing 386 n n C46 H461 PCW sing 387 n n C46 H462 PCW sing 388 n n C47 C48 PCW sing 389 n n C47 H471 PCW sing 390 n n C47 H472 PCW sing 391 n n C48 H481 PCW sing 392 n n C48 H482 PCW sing 393 n n C48 H483 PCW sing 394 n n O1P P PCW sing 395 n n O1P H1P PCW sing 396 n n O2P P PCW doub 397 n n O3P P PCW sing 398 n n O4P P PCW sing 399 n n # _atom_sites.entry_id 7N9K _atom_sites.fract_transf_matrix[1][1] 0.009383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCW A 1 501 501 PCW FCH . C 2 PCW A 1 502 601 PCW FCH . D 3 TMO A 1 503 701 TMO TMO . E 2 PCW A 1 504 801 PCW FCH . F 4 OCT A 1 505 901 OCT ALK . G 5 K A 1 506 1 K K . H 5 K A 1 507 3 K K . I 5 K A 1 508 4 K K . J 5 K A 1 509 6 K K . K 5 K A 1 510 9 K K . L 5 K A 1 511 10 K K . M 5 K A 1 512 12 K K . N 6 HOH A 1 601 23 HOH HOH . N 6 HOH A 2 602 37 HOH HOH . N 6 HOH A 3 603 51 HOH HOH . N 6 HOH A 4 604 12 HOH HOH . N 6 HOH A 5 605 40 HOH HOH . N 6 HOH A 6 606 47 HOH HOH . N 6 HOH A 7 607 49 HOH HOH . N 6 HOH A 8 608 30 HOH HOH . N 6 HOH A 9 609 1 HOH HOH . N 6 HOH A 10 610 50 HOH HOH . N 6 HOH A 11 611 24 HOH HOH . N 6 HOH A 12 612 8 HOH HOH . N 6 HOH A 13 613 33 HOH HOH . N 6 HOH A 14 614 43 HOH HOH . N 6 HOH A 15 615 7 HOH HOH . N 6 HOH A 16 616 11 HOH HOH . N 6 HOH A 17 617 10 HOH HOH . N 6 HOH A 18 618 32 HOH HOH . N 6 HOH A 19 619 34 HOH HOH . N 6 HOH A 20 620 13 HOH HOH . N 6 HOH A 21 621 4 HOH HOH . N 6 HOH A 22 622 3 HOH HOH . N 6 HOH A 23 623 14 HOH HOH . N 6 HOH A 24 624 2 HOH HOH . N 6 HOH A 25 625 18 HOH HOH . N 6 HOH A 26 626 27 HOH HOH . N 6 HOH A 27 627 35 HOH HOH . N 6 HOH A 28 628 5 HOH HOH . N 6 HOH A 29 629 44 HOH HOH . N 6 HOH A 30 630 46 HOH HOH . N 6 HOH A 31 631 38 HOH HOH . N 6 HOH A 32 632 19 HOH HOH . N 6 HOH A 33 633 31 HOH HOH . N 6 HOH A 34 634 6 HOH HOH . N 6 HOH A 35 635 36 HOH HOH . N 6 HOH A 36 636 9 HOH HOH . N 6 HOH A 37 637 42 HOH HOH . N 6 HOH A 38 638 39 HOH HOH . N 6 HOH A 39 639 25 HOH HOH . N 6 HOH A 40 640 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 PCW . . . B 2 -20.538 -43.046 33.238 0.86 89.26 ? C11 PCW 501 A 1 HETATM 2 C C12 PCW . . . B 2 -19.447 -44.067 33.556 0.86 84.51 ? C12 PCW 501 A 1 HETATM 3 C C13 PCW . . . B 2 -18.142 -43.411 34.008 0.86 95.31 ? C13 PCW 501 A 1 HETATM 4 C C14 PCW . . . B 2 -17.182 -44.403 34.664 0.86 87.04 ? C14 PCW 501 A 1 HETATM 5 C C15 PCW . . . B 2 -15.742 -43.892 34.694 0.86 70.26 ? C15 PCW 501 A 1 HETATM 6 C C16 PCW . . . B 2 -14.964 -44.418 35.897 0.86 64.56 ? C16 PCW 501 A 1 HETATM 7 C C17 PCW . . . B 2 -13.507 -43.967 35.875 0.86 58.91 ? C17 PCW 501 A 1 HETATM 8 C C18 PCW . . . B 2 -12.906 -43.869 37.276 0.86 59.22 ? C18 PCW 501 A 1 HETATM 9 C C19 PCW . . . B 2 -11.424 -43.499 37.24 0.86 64.86 ? C19 PCW 501 A 1 HETATM 10 C C20 PCW . . . B 2 -10.813 -43.387 38.636 0.86 69.52 ? C20 PCW 501 A 1 HETATM 11 C C21 PCW . . . B 2 -9.314 -43.689 38.655 0.86 53.93 ? C21 PCW 501 A 1 HETATM 12 H H121 PCW . . . B 2 -19.763 -44.654 34.261 0.86 101.65 ? H121 PCW 501 A 1 HETATM 13 H H122 PCW . . . B 2 -19.272 -44.596 32.761 0.86 101.65 ? H122 PCW 501 A 1 HETATM 14 H H131 PCW . . . B 2 -18.35 -42.709 34.644 0.86 114.61 ? H131 PCW 501 A 1 HETATM 15 H H132 PCW . . . B 2 -17.706 -43.017 33.236 0.86 114.61 ? H132 PCW 501 A 1 HETATM 16 H H141 PCW . . . B 2 -17.208 -45.238 34.17 0.86 104.68 ? H141 PCW 501 A 1 HETATM 17 H H142 PCW . . . B 2 -17.475 -44.568 35.574 0.86 104.68 ? H142 PCW 501 A 1 HETATM 18 H H151 PCW . . . B 2 -15.754 -42.923 34.727 0.86 84.55 ? H151 PCW 501 A 1 HETATM 19 H H152 PCW . . . B 2 -15.293 -44.174 33.882 0.86 84.55 ? H152 PCW 501 A 1 HETATM 20 H H161 PCW . . . B 2 -15.383 -44.095 36.709 0.86 77.71 ? H161 PCW 501 A 1 HETATM 21 H H162 PCW . . . B 2 -14.994 -45.388 35.892 0.86 77.71 ? H162 PCW 501 A 1 HETATM 22 H H171 PCW . . . B 2 -12.989 -44.602 35.355 0.86 70.93 ? H171 PCW 501 A 1 HETATM 23 H H172 PCW . . . B 2 -13.455 -43.096 35.45 0.86 70.93 ? H172 PCW 501 A 1 HETATM 24 H H181 PCW . . . B 2 -13.007 -44.724 37.722 0.86 71.31 ? H181 PCW 501 A 1 HETATM 25 H H182 PCW . . . B 2 -13.388 -43.193 37.779 0.86 71.31 ? H182 PCW 501 A 1 HETATM 26 H H19 PCW . . . B 2 -10.944 -44.178 36.741 0.86 78.07 ? H19 PCW 501 A 1 HETATM 27 H H20 PCW . . . B 2 -11.264 -44.012 39.224 0.86 83.66 ? H20 PCW 501 A 1 HETATM 28 H H211 PCW . . . B 2 -9.187 -44.65 38.712 0.86 64.95 ? H211 PCW 501 A 1 HETATM 29 H H212 PCW . . . B 2 -8.913 -43.365 37.834 0.86 64.95 ? H212 PCW 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #