data_7N9L # _model_server_result.job_id GXCSmAWmbo4e4RhEf9nDmA _model_server_result.datetime_utc '2024-10-15 11:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7N9L # _exptl.entry_id 7N9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N9L _cell.length_a 106.884 _cell.length_b 106.884 _cell.length_c 89.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -106.884 0 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -53.442 -53.442 0 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 53.442 -53.442 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 96 A THR 96 1_555 H K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc2 A O THR 96 A THR 96 1_555 H K K . A K 408 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A O THR 96 A THR 96 1_555 I K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc4 A OG1 THR 96 A THR 96 1_555 I K K . A K 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc5 A O THR 96 A THR 96 1_555 I K K . A K 409 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc6 A OG1 THR 96 A THR 96 1_555 I K K . A K 409 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 A O ILE 97 A ILE 97 1_555 H K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc8 A O ILE 97 A ILE 97 1_555 H K K . A K 408 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc9 A O GLY 98 A GLY 98 1_555 G K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc10 A O GLY 98 A GLY 98 1_555 G K K . A K 406 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc11 A O TYR 99 A TYR 99 1_555 G K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc12 A O TYR 99 A TYR 99 1_555 G K K . A K 406 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 237 n n C1 O3P PCW sing 238 n n C1 H11 PCW sing 239 n n C1 H12 PCW sing 240 n n C2 C3 PCW sing 241 n n C2 O2 PCW sing 242 n n C2 H2 PCW sing 243 n n C3 O3 PCW sing 244 n n C3 H31 PCW sing 245 n n C3 H32 PCW sing 246 n n C4 C5 PCW sing 247 n n C4 O4P PCW sing 248 n n C4 H41 PCW sing 249 n n C4 H42 PCW sing 250 n n C5 N PCW sing 251 n n C5 H51 PCW sing 252 n n C5 H52 PCW sing 253 n n C6 N PCW sing 254 n n C6 H61 PCW sing 255 n n C6 H62 PCW sing 256 n n C6 H63 PCW sing 257 n n C7 N PCW sing 258 n n C7 H71 PCW sing 259 n n C7 H72 PCW sing 260 n n C7 H73 PCW sing 261 n n C8 N PCW sing 262 n n C8 H81 PCW sing 263 n n C8 H82 PCW sing 264 n n C8 H83 PCW sing 265 n n C11 C12 PCW sing 266 n n C11 O3 PCW sing 267 n n C11 O11 PCW doub 268 n n C12 C13 PCW sing 269 n n C12 H121 PCW sing 270 n n C12 H122 PCW sing 271 n n C13 C14 PCW sing 272 n n C13 H131 PCW sing 273 n n C13 H132 PCW sing 274 n n C14 C15 PCW sing 275 n n C14 H141 PCW sing 276 n n C14 H142 PCW sing 277 n n C15 C16 PCW sing 278 n n C15 H151 PCW sing 279 n n C15 H152 PCW sing 280 n n C16 C17 PCW sing 281 n n C16 H161 PCW sing 282 n n C16 H162 PCW sing 283 n n C17 C18 PCW sing 284 n n C17 H171 PCW sing 285 n n C17 H172 PCW sing 286 n n C18 C19 PCW sing 287 n n C18 H181 PCW sing 288 n n C18 H182 PCW sing 289 n n C19 C20 PCW doub 290 z n C19 H19 PCW sing 291 n n C20 C21 PCW sing 292 n n C20 H20 PCW sing 293 n n C21 C22 PCW sing 294 n n C21 H211 PCW sing 295 n n C21 H212 PCW sing 296 n n C22 C23 PCW sing 297 n n C22 H221 PCW sing 298 n n C22 H222 PCW sing 299 n n C23 C24 PCW sing 300 n n C23 H231 PCW sing 301 n n C23 H232 PCW sing 302 n n C24 C25 PCW sing 303 n n C24 H241 PCW sing 304 n n C24 H242 PCW sing 305 n n C25 C26 PCW sing 306 n n C25 H251 PCW sing 307 n n C25 H252 PCW sing 308 n n C26 C27 PCW sing 309 n n C26 H261 PCW sing 310 n n C26 H262 PCW sing 311 n n C27 C28 PCW sing 312 n n C27 H271 PCW sing 313 n n C27 H272 PCW sing 314 n n C28 H281 PCW sing 315 n n C28 H282 PCW sing 316 n n C28 H283 PCW sing 317 n n C31 C32 PCW sing 318 n n C31 O2 PCW sing 319 n n C31 O31 PCW doub 320 n n C32 C33 PCW sing 321 n n C32 H321 PCW sing 322 n n C32 H322 PCW sing 323 n n C33 C34 PCW sing 324 n n C33 H331 PCW sing 325 n n C33 H332 PCW sing 326 n n C34 C35 PCW sing 327 n n C34 H341 PCW sing 328 n n C34 H342 PCW sing 329 n n C35 C36 PCW sing 330 n n C35 H351 PCW sing 331 n n C35 H352 PCW sing 332 n n C36 C37 PCW sing 333 n n C36 H361 PCW sing 334 n n C36 H362 PCW sing 335 n n C37 C38 PCW sing 336 n n C37 H371 PCW sing 337 n n C37 H372 PCW sing 338 n n C38 C39 PCW sing 339 n n C38 H381 PCW sing 340 n n C38 H382 PCW sing 341 n n C39 C40 PCW doub 342 z n C39 H39 PCW sing 343 n n C40 C41 PCW sing 344 n n C40 H40 PCW sing 345 n n C41 C42 PCW sing 346 n n C41 H411 PCW sing 347 n n C41 H412 PCW sing 348 n n C42 C43 PCW sing 349 n n C42 H421 PCW sing 350 n n C42 H422 PCW sing 351 n n C43 C44 PCW sing 352 n n C43 H431 PCW sing 353 n n C43 H432 PCW sing 354 n n C44 C45 PCW sing 355 n n C44 H441 PCW sing 356 n n C44 H442 PCW sing 357 n n C45 C46 PCW sing 358 n n C45 H451 PCW sing 359 n n C45 H452 PCW sing 360 n n C46 C47 PCW sing 361 n n C46 H461 PCW sing 362 n n C46 H462 PCW sing 363 n n C47 C48 PCW sing 364 n n C47 H471 PCW sing 365 n n C47 H472 PCW sing 366 n n C48 H481 PCW sing 367 n n C48 H482 PCW sing 368 n n C48 H483 PCW sing 369 n n O1P P PCW sing 370 n n O1P H1P PCW sing 371 n n O2P P PCW doub 372 n n O3P P PCW sing 373 n n O4P P PCW sing 374 n n # _atom_sites.entry_id 7N9L _atom_sites.fract_transf_matrix[1][1] 0.009356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCW A 1 401 301 PCW FCH . C 2 PCW A 1 402 601 PCW FCH . D 2 PCW A 1 403 701 PCW FCH . E 2 PCW A 1 404 702 PCW FCH . F 3 TMO A 1 405 301 TMO TMO . G 4 K A 1 406 1 K K . H 4 K A 1 408 3 K K . I 4 K A 1 409 4 K K . J 4 K A 1 410 6 K K . K 4 K A 1 411 7 K K . L 4 K A 1 412 9 K K . M 4 K A 1 413 10 K K . N 4 K A 1 414 11 K K . O 4 K A 1 415 12 K K . P 5 HOH A 1 501 87 HOH HOH . P 5 HOH A 2 502 18 HOH HOH . P 5 HOH A 3 503 46 HOH HOH . P 5 HOH A 4 504 36 HOH HOH . P 5 HOH A 5 505 48 HOH HOH . P 5 HOH A 6 506 30 HOH HOH . P 5 HOH A 7 507 49 HOH HOH . P 5 HOH A 8 508 101 HOH HOH . P 5 HOH A 9 509 52 HOH HOH . P 5 HOH A 10 510 5 HOH HOH . P 5 HOH A 11 511 51 HOH HOH . P 5 HOH A 12 512 33 HOH HOH . P 5 HOH A 13 513 35 HOH HOH . P 5 HOH A 14 514 11 HOH HOH . P 5 HOH A 15 515 40 HOH HOH . P 5 HOH A 16 516 14 HOH HOH . P 5 HOH A 17 517 31 HOH HOH . P 5 HOH A 18 518 8 HOH HOH . P 5 HOH A 19 519 85 HOH HOH . P 5 HOH A 20 520 98 HOH HOH . P 5 HOH A 21 521 82 HOH HOH . P 5 HOH A 22 522 54 HOH HOH . P 5 HOH A 23 523 38 HOH HOH . P 5 HOH A 24 524 27 HOH HOH . P 5 HOH A 25 525 61 HOH HOH . P 5 HOH A 26 526 84 HOH HOH . P 5 HOH A 27 527 83 HOH HOH . P 5 HOH A 28 528 26 HOH HOH . P 5 HOH A 29 529 34 HOH HOH . P 5 HOH A 30 530 2 HOH HOH . P 5 HOH A 31 531 78 HOH HOH . P 5 HOH A 32 532 79 HOH HOH . P 5 HOH A 33 533 3 HOH HOH . P 5 HOH A 34 534 15 HOH HOH . P 5 HOH A 35 535 88 HOH HOH . P 5 HOH A 36 536 81 HOH HOH . P 5 HOH A 37 537 70 HOH HOH . P 5 HOH A 38 538 23 HOH HOH . P 5 HOH A 39 539 67 HOH HOH . P 5 HOH A 40 540 22 HOH HOH . P 5 HOH A 41 541 7 HOH HOH . P 5 HOH A 42 542 6 HOH HOH . P 5 HOH A 43 543 10 HOH HOH . P 5 HOH A 44 544 69 HOH HOH . P 5 HOH A 45 545 50 HOH HOH . P 5 HOH A 46 546 80 HOH HOH . P 5 HOH A 47 547 94 HOH HOH . P 5 HOH A 48 548 99 HOH HOH . P 5 HOH A 49 549 47 HOH HOH . P 5 HOH A 50 550 60 HOH HOH . P 5 HOH A 51 551 72 HOH HOH . P 5 HOH A 52 552 56 HOH HOH . P 5 HOH A 53 553 32 HOH HOH . P 5 HOH A 54 554 89 HOH HOH . P 5 HOH A 55 555 66 HOH HOH . P 5 HOH A 56 556 42 HOH HOH . P 5 HOH A 57 557 43 HOH HOH . P 5 HOH A 58 558 41 HOH HOH . P 5 HOH A 59 559 39 HOH HOH . P 5 HOH A 60 560 93 HOH HOH . P 5 HOH A 61 561 55 HOH HOH . P 5 HOH A 62 562 91 HOH HOH . P 5 HOH A 63 563 13 HOH HOH . P 5 HOH A 64 564 9 HOH HOH . P 5 HOH A 65 565 53 HOH HOH . P 5 HOH A 66 566 64 HOH HOH . P 5 HOH A 67 567 92 HOH HOH . P 5 HOH A 68 568 57 HOH HOH . P 5 HOH A 69 569 29 HOH HOH . P 5 HOH A 70 570 97 HOH HOH . P 5 HOH A 71 571 59 HOH HOH . P 5 HOH A 72 572 96 HOH HOH . P 5 HOH A 73 573 100 HOH HOH . P 5 HOH A 74 574 73 HOH HOH . P 5 HOH A 75 575 63 HOH HOH . P 5 HOH A 76 576 68 HOH HOH . P 5 HOH A 77 577 16 HOH HOH . P 5 HOH A 78 578 65 HOH HOH . P 5 HOH A 79 579 37 HOH HOH . P 5 HOH A 80 580 24 HOH HOH . P 5 HOH A 81 581 25 HOH HOH . P 5 HOH A 82 582 28 HOH HOH . P 5 HOH A 83 583 90 HOH HOH . P 5 HOH A 84 584 86 HOH HOH . P 5 HOH A 85 585 12 HOH HOH . P 5 HOH A 86 586 58 HOH HOH . P 5 HOH A 87 587 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 PCW . . . D 2 13.747 -57.747 40.232 0.8 65.25 ? C11 PCW 403 A 1 HETATM 2 C C12 PCW . . . D 2 13.334 -57.84 41.7 0.78 52.85 ? C12 PCW 403 A 1 HETATM 3 C C13 PCW . . . D 2 12.966 -59.266 42.107 0.67 54.44 ? C13 PCW 403 A 1 HETATM 4 C C14 PCW . . . D 2 12.567 -59.363 43.579 0.62 58.09 ? C14 PCW 403 A 1 HETATM 5 C C15 PCW . . . D 2 12.137 -60.778 43.964 0.81 58.09 ? C15 PCW 403 A 1 HETATM 6 C C16 PCW . . . D 2 10.719 -60.847 44.53 0.83 55.13 ? C16 PCW 403 A 1 HETATM 7 C C17 PCW . . . D 2 9.889 -61.905 43.805 0.91 58.88 ? C17 PCW 403 A 1 HETATM 8 C C18 PCW . . . D 2 8.388 -61.756 44.041 0.93 58.08 ? C18 PCW 403 A 1 HETATM 9 C C19 PCW . . . D 2 7.594 -62.577 43.026 0.96 58.88 ? C19 PCW 403 A 1 HETATM 10 H H121 PCW . . . D 2 14.07 -57.535 42.253 0.8 63.42 ? H121 PCW 403 A 1 HETATM 11 H H122 PCW . . . D 2 12.569 -57.264 41.848 0.8 63.42 ? H122 PCW 403 A 1 HETATM 12 H H131 PCW . . . D 2 12.225 -59.568 41.56 0.67 65.33 ? H131 PCW 403 A 1 HETATM 13 H H132 PCW . . . D 2 13.729 -59.845 41.949 0.68 65.33 ? H132 PCW 403 A 1 HETATM 14 H H141 PCW . . . D 2 13.323 -59.103 44.128 0.64 69.71 ? H141 PCW 403 A 1 HETATM 15 H H142 PCW . . . D 2 11.832 -58.753 43.747 0.64 69.71 ? H142 PCW 403 A 1 HETATM 16 H H151 PCW . . . D 2 12.184 -61.341 43.176 0.81 69.71 ? H151 PCW 403 A 1 HETATM 17 H H152 PCW . . . D 2 12.754 -61.118 44.632 0.81 69.71 ? H152 PCW 403 A 1 HETATM 18 H H161 PCW . . . D 2 10.763 -61.067 45.474 0.83 66.16 ? H161 PCW 403 A 1 HETATM 19 H H162 PCW . . . D 2 10.293 -59.981 44.428 0.83 66.16 ? H162 PCW 403 A 1 HETATM 20 H H171 PCW . . . D 2 10.062 -61.836 42.853 0.9 70.66 ? H171 PCW 403 A 1 HETATM 21 H H172 PCW . . . D 2 10.166 -62.782 44.112 0.89 70.66 ? H172 PCW 403 A 1 HETATM 22 H H181 PCW . . . D 2 8.142 -60.822 43.959 0.91 69.69 ? H181 PCW 403 A 1 HETATM 23 H H182 PCW . . . D 2 8.173 -62.061 44.936 0.91 69.69 ? H182 PCW 403 A 1 HETATM 24 H H19 PCW . . . D 2 8.018 -63.443 42.922 0.94 70.66 ? H19 PCW 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #