data_7NA2
#
_model_server_result.job_id            Q7DyQM55BUoqKgIyoZPpZw 
_model_server_result.datetime_utc      '2024-11-29 08:42:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7na2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7NA2 
#
_exptl.entry_id    7NA2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              550.052 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[4-(5-chloropyridin-3-yl)-2-[(4aR,7aR)-hexahydrocyclopenta[b][1,4]oxazin-4(4aH)-yl]-3-{[(1r,4R)-4-methylcyclohexyl]methyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.12 
_cell.angle_gamma         90 
_cell.entry_id            7NA2 
_cell.length_a            37.925 
_cell.length_b            68.341 
_cell.length_c            42.105 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NA2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H32 Cl N7 O3' 
_chem_comp.formula_weight    550.052 
_chem_comp.id                1I0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[4-(5-chloropyridin-3-yl)-2-[(4aR,7aR)-hexahydrocyclopenta[b][1,4]oxazin-4(4aH)-yl]-3-{[(1r,4R)-4-methylcyclohexyl]methyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O38 C37 1I0 doub 1 n n 
C37 O36 1I0 sing 2 n n 
C37 N39 1I0 sing 3 n n 
O36 N35 1I0 sing 4 n n 
N39 C34 1I0 sing 5 n n 
N35 C34 1I0 doub 6 n n 
C34 C1 1I0 sing 7 n n 
N29 C28 1I0 doub 8 n y 
N29 C30 1I0 sing 9 n y 
C28 C27 1I0 sing 10 n y 
C30 C31 1I0 doub 11 n y 
N26 C1 1I0 doub 12 n y 
N26 C25 1I0 sing 13 n y 
C1 C2 1I0 sing 14 n y 
C27 C25 1I0 sing 15 n n 
C27 C33 1I0 doub 16 n y 
C25 C24 1I0 doub 17 n y 
C31 C33 1I0 sing 18 n y 
C31 CL32 1I0 sing 19 n n 
C2 C3 1I0 doub 20 n y 
C24 C3 1I0 sing 21 n y 
C24 N15 1I0 sing 22 n y 
C3 N4 1I0 sing 23 n y 
N15 C16 1I0 sing 24 n n 
N15 C5 1I0 sing 25 n y 
N4 C5 1I0 doub 26 n y 
C16 C17 1I0 sing 27 n n 
C5 N6 1I0 sing 28 n n 
C7 N6 1I0 sing 29 n n 
C7 C8 1I0 sing 30 n n 
N6 C14 1I0 sing 31 n n 
C17 C18 1I0 sing 32 n n 
C17 C23 1I0 sing 33 n n 
C18 C19 1I0 sing 34 n n 
C8 O9 1I0 sing 35 n n 
C14 C13 1I0 sing 36 n n 
C14 C10 1I0 sing 37 n n 
C19 C20 1I0 sing 38 n n 
O9 C10 1I0 sing 39 n n 
C23 C22 1I0 sing 40 n n 
C13 C12 1I0 sing 41 n n 
C10 C11 1I0 sing 42 n n 
C22 C20 1I0 sing 43 n n 
C20 C21 1I0 sing 44 n n 
C12 C11 1I0 sing 45 n n 
C2 H1 1I0 sing 46 n n 
C7 H2 1I0 sing 47 n n 
C7 H3 1I0 sing 48 n n 
C8 H4 1I0 sing 49 n n 
C8 H5 1I0 sing 50 n n 
C11 H6 1I0 sing 51 n n 
C11 H7 1I0 sing 52 n n 
C12 H8 1I0 sing 53 n n 
C12 H9 1I0 sing 54 n n 
C16 H10 1I0 sing 55 n n 
C16 H11 1I0 sing 56 n n 
C17 H12 1I0 sing 57 n n 
C18 H13 1I0 sing 58 n n 
C18 H14 1I0 sing 59 n n 
C19 H15 1I0 sing 60 n n 
C19 H16 1I0 sing 61 n n 
C21 H17 1I0 sing 62 n n 
C21 H18 1I0 sing 63 n n 
C21 H19 1I0 sing 64 n n 
C23 H20 1I0 sing 65 n n 
C23 H21 1I0 sing 66 n n 
C30 H22 1I0 sing 67 n n 
C33 H23 1I0 sing 68 n n 
C10 H24 1I0 sing 69 n n 
C13 H25 1I0 sing 70 n n 
C13 H26 1I0 sing 71 n n 
C14 H27 1I0 sing 72 n n 
C20 H28 1I0 sing 73 n n 
C22 H29 1I0 sing 74 n n 
C22 H30 1I0 sing 75 n n 
C28 H31 1I0 sing 76 n n 
N39 H32 1I0 sing 77 n n 
#
_atom_sites.entry_id                     7NA2 
_atom_sites.fract_transf_matrix[1][1]    0.026368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011259 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1I0 A 1 201 1 1I0 INX . 
D 2 1I0 B 1 201 2 1I0 INX . 
E 3 HOH A 1 301 48 HOH HOH . 
E 3 HOH A 2 302 79 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
E 3 HOH A 4 304 6 HOH HOH . 
E 3 HOH A 5 305 65 HOH HOH . 
E 3 HOH A 6 306 54 HOH HOH . 
E 3 HOH A 7 307 3 HOH HOH . 
E 3 HOH A 8 308 2 HOH HOH . 
E 3 HOH A 9 309 62 HOH HOH . 
E 3 HOH A 10 310 77 HOH HOH . 
E 3 HOH A 11 311 7 HOH HOH . 
E 3 HOH A 12 312 42 HOH HOH . 
E 3 HOH A 13 313 18 HOH HOH . 
E 3 HOH A 14 314 56 HOH HOH . 
E 3 HOH A 15 315 12 HOH HOH . 
E 3 HOH A 16 316 5 HOH HOH . 
E 3 HOH A 17 317 30 HOH HOH . 
E 3 HOH A 18 318 59 HOH HOH . 
E 3 HOH A 19 319 34 HOH HOH . 
E 3 HOH A 20 320 32 HOH HOH . 
E 3 HOH A 21 321 41 HOH HOH . 
E 3 HOH A 22 322 22 HOH HOH . 
E 3 HOH A 23 323 17 HOH HOH . 
E 3 HOH A 24 324 60 HOH HOH . 
E 3 HOH A 25 325 23 HOH HOH . 
E 3 HOH A 26 326 39 HOH HOH . 
E 3 HOH A 27 327 53 HOH HOH . 
E 3 HOH A 28 328 61 HOH HOH . 
E 3 HOH A 29 329 63 HOH HOH . 
E 3 HOH A 30 330 29 HOH HOH . 
E 3 HOH A 31 331 38 HOH HOH . 
E 3 HOH A 32 332 51 HOH HOH . 
E 3 HOH A 33 333 64 HOH HOH . 
E 3 HOH A 34 334 10 HOH HOH . 
E 3 HOH A 35 335 35 HOH HOH . 
E 3 HOH A 36 336 33 HOH HOH . 
E 3 HOH A 37 337 15 HOH HOH . 
E 3 HOH A 38 338 43 HOH HOH . 
E 3 HOH A 39 339 45 HOH HOH . 
E 3 HOH A 40 340 80 HOH HOH . 
F 3 HOH B 1 301 82 HOH HOH . 
F 3 HOH B 2 302 8 HOH HOH . 
F 3 HOH B 3 303 40 HOH HOH . 
F 3 HOH B 4 304 28 HOH HOH . 
F 3 HOH B 5 305 24 HOH HOH . 
F 3 HOH B 6 306 14 HOH HOH . 
F 3 HOH B 7 307 21 HOH HOH . 
F 3 HOH B 8 308 76 HOH HOH . 
F 3 HOH B 9 309 31 HOH HOH . 
F 3 HOH B 10 310 20 HOH HOH . 
F 3 HOH B 11 311 16 HOH HOH . 
F 3 HOH B 12 312 58 HOH HOH . 
F 3 HOH B 13 313 13 HOH HOH . 
F 3 HOH B 14 314 68 HOH HOH . 
F 3 HOH B 15 315 66 HOH HOH . 
F 3 HOH B 16 316 44 HOH HOH . 
F 3 HOH B 17 317 57 HOH HOH . 
F 3 HOH B 18 318 49 HOH HOH . 
F 3 HOH B 19 319 19 HOH HOH . 
F 3 HOH B 20 320 1 HOH HOH . 
F 3 HOH B 21 321 67 HOH HOH . 
F 3 HOH B 22 322 26 HOH HOH . 
F 3 HOH B 23 323 52 HOH HOH . 
F 3 HOH B 24 324 47 HOH HOH . 
F 3 HOH B 25 325 46 HOH HOH . 
F 3 HOH B 26 326 71 HOH HOH . 
F 3 HOH B 27 327 75 HOH HOH . 
F 3 HOH B 28 328 11 HOH HOH . 
F 3 HOH B 29 329 27 HOH HOH . 
F 3 HOH B 30 330 78 HOH HOH . 
F 3 HOH B 31 331 50 HOH HOH . 
F 3 HOH B 32 332 55 HOH HOH . 
F 3 HOH B 33 333 9 HOH HOH . 
F 3 HOH B 34 334 73 HOH HOH . 
F 3 HOH B 35 335 70 HOH HOH . 
F 3 HOH B 36 336 25 HOH HOH . 
F 3 HOH B 37 337 36 HOH HOH . 
F 3 HOH B 38 338 37 HOH HOH . 
F 3 HOH B 39 339 69 HOH HOH . 
F 3 HOH B 40 340 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1I0 . . . C 2 0.219 -8.462 5.54 1 20.4 ? C1 1I0 201 A 1 
HETATM 2 C C2 1I0 . . . C 2 0.872 -9.495 6.151 1 18.72 ? C2 1I0 201 A 1 
HETATM 3 C C3 1I0 . . . C 2 2.043 -9.082 6.808 1 22.49 ? C3 1I0 201 A 1 
HETATM 4 C C5 1I0 . . . C 2 3.826 -9.071 7.968 1 17.44 ? C5 1I0 201 A 1 
HETATM 5 C C7 1I0 . . . C 2 6.197 -9.571 8.233 1 25.65 ? C7 1I0 201 A 1 
HETATM 6 C C8 1I0 . . . C 2 7.315 -9.861 9.273 1 26.22 ? C8 1I0 201 A 1 
HETATM 7 O O9 1I0 . . . C 2 6.943 -10.96 10.112 1 27.59 ? O9 1I0 201 A 1 
HETATM 8 C C11 1I0 . . . C 2 5.264 -11.694 11.765 1 20.27 ? C11 1I0 201 A 1 
HETATM 9 C C12 1I0 . . . C 2 3.704 -11.613 11.688 1 19.18 ? C12 1I0 201 A 1 
HETATM 10 C C16 1I0 . . . C 2 4.507 -6.645 7.864 1 20.58 ? C16 1I0 201 A 1 
HETATM 11 C C17 1I0 . . . C 2 3.76 -5.742 8.883 1 21.34 ? C17 1I0 201 A 1 
HETATM 12 C C18 1I0 . . . C 2 4.53 -4.464 9.107 1 21.48 ? C18 1I0 201 A 1 
HETATM 13 C C19 1I0 . . . C 2 3.805 -3.457 10.062 1 23.19 ? C19 1I0 201 A 1 
HETATM 14 C C21 1I0 . . . C 2 2.881 -3.289 12.324 1 18.86 ? C21 1I0 201 A 1 
HETATM 15 C C23 1I0 . . . C 2 3.317 -6.471 10.165 1 24.32 ? C23 1I0 201 A 1 
HETATM 16 C C24 1I0 . . . C 2 2.515 -7.8 6.723 1 23.18 ? C24 1I0 201 A 1 
HETATM 17 C C27 1I0 . . . C 2 2.332 -5.402 5.802 1 23.52 ? C27 1I0 201 A 1 
HETATM 18 C C30 1I0 . . . C 2 3.217 -2.75 5.405 1 22.07 ? C30 1I0 201 A 1 
HETATM 19 C C31 1I0 . . . C 2 1.959 -2.985 6.033 1 23.43 ? C31 1I0 201 A 1 
HETATM 20 C C33 1I0 . . . C 2 1.594 -4.286 6.288 1 26.11 ? C33 1I0 201 A 1 
HETATM 21 C C34 1I0 . . . C 2 -1.041 -8.803 4.89 1 22.72 ? C34 1I0 201 A 1 
HETATM 22 C C37 1I0 . . . C 2 -2.81 -8.387 3.799 1 34.5 ? C37 1I0 201 A 1 
HETATM 23 N N4 1I0 . . . C 2 2.908 -9.809 7.488 1 22.99 ? N4 1I0 201 A 1 
HETATM 24 N N6 1I0 . . . C 2 4.811 -9.632 8.74 1 25.93 ? N6 1I0 201 A 1 
HETATM 25 C C10 1I0 . . . C 2 5.743 -10.661 10.784 1 29.68 ? C10 1I0 201 A 1 
HETATM 26 C C13 1I0 . . . C 2 3.406 -10.439 10.761 1 19.32 ? C13 1I0 201 A 1 
HETATM 27 C C14 1I0 . . . C 2 4.545 -10.646 9.779 1 21.79 ? C14 1I0 201 A 1 
HETATM 28 N N15 1I0 . . . C 2 3.697 -7.831 7.478 1 16.32 ? N15 1I0 201 A 1 
HETATM 29 C C20 1I0 . . . C 2 3.454 -4.275 11.323 1 20.66 ? C20 1I0 201 A 1 
HETATM 30 C C22 1I0 . . . C 2 2.57 -5.457 11.047 1 22.16 ? C22 1I0 201 A 1 
HETATM 31 C C25 1I0 . . . C 2 1.837 -6.809 5.991 1 29.79 ? C25 1I0 201 A 1 
HETATM 32 N N26 1I0 . . . C 2 0.615 -7.165 5.474 1 23.45 ? N26 1I0 201 A 1 
HETATM 33 C C28 1I0 . . . C 2 3.506 -5.063 5.08 1 22.04 ? C28 1I0 201 A 1 
HETATM 34 N N29 1I0 . . . C 2 3.933 -3.808 4.941 1 22.56 ? N29 1I0 201 A 1 
HETATM 35 CL CL32 1I0 . . . C 2 1.037 -1.639 6.705 1 25.51 ? CL32 1I0 201 A 1 
HETATM 36 N N35 1I0 . . . C 2 -1.636 -9.891 4.709 1 23.4 ? N35 1I0 201 A 1 
HETATM 37 O O36 1I0 . . . C 2 -2.802 -9.713 4.092 1 34.22 ? O36 1I0 201 A 1 
HETATM 38 O O38 1I0 . . . C 2 -3.59 -7.689 3.26 1 30.42 ? O38 1I0 201 A 1 
HETATM 39 N N39 1I0 . . . C 2 -1.718 -7.77 4.261 1 24.94 ? N39 1I0 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#