data_7NA3 # _model_server_result.job_id aQ1i6YV4APxuWV5qBDGo3Q _model_server_result.datetime_utc '2024-12-01 15:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7na3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7NA3 # _exptl.entry_id 7NA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 511.016 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(5-chloropyridin-3-yl)-2-[(2S)-1-methoxypropan-2-yl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NA3 _cell.length_a 56.467 _cell.length_b 56.467 _cell.length_c 105.166 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H31 Cl N6 O3' _chem_comp.formula_weight 511.016 _chem_comp.id 1I3 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(5-chloropyridin-3-yl)-2-[(2S)-1-methoxypropan-2-yl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 C34 1I3 doub 1 n n O33 C34 1I3 sing 2 n n O33 N32 1I3 sing 3 n n C34 N36 1I3 sing 4 n n N32 C31 1I3 doub 5 n n N36 C31 1I3 sing 6 n n C31 C1 1I3 sing 7 n n CL29 C28 1I3 sing 8 n n C1 N23 1I3 doub 9 n y C1 C2 1I3 sing 10 n y N23 C22 1I3 sing 11 n y C30 C28 1I3 doub 12 n y C30 C24 1I3 sing 13 n y C28 C27 1I3 sing 14 n y C2 C3 1I3 doub 15 n y C24 C22 1I3 sing 16 n n C24 C25 1I3 doub 17 n y C22 C21 1I3 doub 18 n y C27 N26 1I3 doub 19 n y C25 N26 1I3 sing 20 n y C3 C21 1I3 sing 21 n y C3 N4 1I3 sing 22 n y C21 N11 1I3 sing 23 n y C15 C16 1I3 sing 24 n n C15 C14 1I3 sing 25 n n C16 C17 1I3 sing 26 n n N4 C5 1I3 doub 27 n y N11 C12 1I3 sing 28 n n N11 C5 1I3 sing 29 n y C17 C18 1I3 sing 30 n n C17 C19 1I3 sing 31 n n C12 C14 1I3 sing 32 n n C12 C13 1I3 sing 33 n n C5 C6 1I3 sing 34 n n C14 C20 1I3 sing 35 n n C10 O9 1I3 sing 36 n n C20 C19 1I3 sing 37 n n O9 C8 1I3 sing 38 n n C6 C8 1I3 sing 39 n n C6 C7 1I3 sing 40 n n C2 H1 1I3 sing 41 n n C6 H2 1I3 sing 42 n n C7 H3 1I3 sing 43 n n C7 H4 1I3 sing 44 n n C7 H5 1I3 sing 45 n n C8 H6 1I3 sing 46 n n C8 H7 1I3 sing 47 n n C12 H8 1I3 sing 48 n n C15 H9 1I3 sing 49 n n C15 H10 1I3 sing 50 n n C16 H11 1I3 sing 51 n n C16 H12 1I3 sing 52 n n C17 H13 1I3 sing 53 n n C18 H14 1I3 sing 54 n n C18 H15 1I3 sing 55 n n C18 H16 1I3 sing 56 n n C19 H17 1I3 sing 57 n n C19 H18 1I3 sing 58 n n C27 H19 1I3 sing 59 n n C30 H20 1I3 sing 60 n n C10 H21 1I3 sing 61 n n C10 H22 1I3 sing 62 n n C10 H23 1I3 sing 63 n n C13 H24 1I3 sing 64 n n C13 H25 1I3 sing 65 n n C13 H26 1I3 sing 66 n n C14 H27 1I3 sing 67 n n C20 H28 1I3 sing 68 n n C20 H29 1I3 sing 69 n n C25 H30 1I3 sing 70 n n N36 H31 1I3 sing 71 n n # _atom_sites.entry_id 7NA3 _atom_sites.fract_transf_matrix[1][1] 0.017709 _atom_sites.fract_transf_matrix[1][2] 0.010225 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1I3 A 1 201 1 1I3 INX . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 3 SO4 A 1 205 4 SO4 SO4 . G 4 HOH A 1 301 11 HOH HOH . G 4 HOH A 2 302 10 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 2 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 3 HOH HOH . G 4 HOH A 7 307 1 HOH HOH . G 4 HOH A 8 308 8 HOH HOH . G 4 HOH A 9 309 9 HOH HOH . G 4 HOH A 10 310 7 HOH HOH . G 4 HOH A 11 311 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1I3 . . . B 2 -9.4 9.924 -3.64 1 52.86 ? C1 1I3 201 A 1 HETATM 2 C C2 1I3 . . . B 2 -10.246 10.219 -2.564 1 46.99 ? C2 1I3 201 A 1 HETATM 3 C C3 1I3 . . . B 2 -9.634 10.515 -1.338 1 48.98 ? C3 1I3 201 A 1 HETATM 4 C C5 1I3 . . . B 2 -9.126 11.061 0.699 1 51.11 ? C5 1I3 201 A 1 HETATM 5 C C6 1I3 . . . B 2 -9.345 11.479 2.161 1 52.58 ? C6 1I3 201 A 1 HETATM 6 C C7 1I3 . . . B 2 -10.02 10.364 2.991 1 44.64 ? C7 1I3 201 A 1 HETATM 7 C C8 1I3 . . . B 2 -10.196 12.742 2.237 1 45.64 ? C8 1I3 201 A 1 HETATM 8 O O9 1I3 . . . B 2 -9.587 13.8 1.475 1 44.32 ? O9 1I3 201 A 1 HETATM 9 C C12 1I3 . . . B 2 -6.558 11.039 0.618 1 47.77 ? C12 1I3 201 A 1 HETATM 10 C C15 1I3 . . . B 2 -6.676 13.431 -0.436 1 39.42 ? C15 1I3 201 A 1 HETATM 11 C C16 1I3 . . . B 2 -6.333 14.926 -0.258 1 41.19 ? C16 1I3 201 A 1 HETATM 12 C C17 1I3 . . . B 2 -4.867 15.14 0.14 1 40.47 ? C17 1I3 201 A 1 HETATM 13 C C18 1I3 . . . B 2 -4.536 16.629 0.349 1 36.51 ? C18 1I3 201 A 1 HETATM 14 C C19 1I3 . . . B 2 -4.562 14.335 1.408 1 34.68 ? C19 1I3 201 A 1 HETATM 15 C C21 1I3 . . . B 2 -8.212 10.496 -1.254 1 48.22 ? C21 1I3 201 A 1 HETATM 16 C C24 1I3 . . . B 2 -5.971 10.055 -2.432 1 48.24 ? C24 1I3 201 A 1 HETATM 17 C C27 1I3 . . . B 2 -3.232 9.758 -2.368 1 42.87 ? C27 1I3 201 A 1 HETATM 18 C C30 1I3 . . . B 2 -5.181 10.991 -3.078 1 44.11 ? C30 1I3 201 A 1 HETATM 19 C C31 1I3 . . . B 2 -9.875 9.613 -4.984 1 54.37 ? C31 1I3 201 A 1 HETATM 20 C C34 1I3 . . . B 2 -11.051 9.279 -6.758 1 71.96 ? C34 1I3 201 A 1 HETATM 21 N N4 1I3 . . . B 2 -10.105 10.865 -0.127 1 43.12 ? N4 1I3 201 A 1 HETATM 22 C C10 1I3 . . . B 2 -10.455 14.85 1.042 1 39.63 ? C10 1I3 201 A 1 HETATM 23 N N11 1I3 . . . B 2 -7.917 10.837 0.052 1 48.28 ? N11 1I3 201 A 1 HETATM 24 C C13 1I3 . . . B 2 -6.312 10.162 1.868 1 47.85 ? C13 1I3 201 A 1 HETATM 25 C C14 1I3 . . . B 2 -6.335 12.572 0.814 1 38.72 ? C14 1I3 201 A 1 HETATM 26 C C20 1I3 . . . B 2 -4.851 12.841 1.124 1 42.72 ? C20 1I3 201 A 1 HETATM 27 C C22 1I3 . . . B 2 -7.46 10.163 -2.411 1 51.14 ? C22 1I3 201 A 1 HETATM 28 N N23 1I3 . . . B 2 -8.088 9.886 -3.523 1 55.89 ? N23 1I3 201 A 1 HETATM 29 C C25 1I3 . . . B 2 -5.327 8.989 -1.775 1 51.23 ? C25 1I3 201 A 1 HETATM 30 N N26 1I3 . . . B 2 -3.996 8.875 -1.762 1 49.2 ? N26 1I3 201 A 1 HETATM 31 C C28 1I3 . . . B 2 -3.803 10.838 -3.018 1 45.73 ? C28 1I3 201 A 1 HETATM 32 CL CL29 1I3 . . . B 2 -2.817 12.006 -3.791 1 50.39 ? CL29 1I3 201 A 1 HETATM 33 N N32 1I3 . . . B 2 -9.096 9.408 -5.994 1 62.83 ? N32 1I3 201 A 1 HETATM 34 O O33 1I3 . . . B 2 -9.73 9.185 -7.008 1 76.72 ? O33 1I3 201 A 1 HETATM 35 O O35 1I3 . . . B 2 -11.943 9.156 -7.566 1 76.16 ? O35 1I3 201 A 1 HETATM 36 N N36 1I3 . . . B 2 -11.185 9.561 -5.434 1 66.46 ? N36 1I3 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #