data_7NA4
#
_model_server_result.job_id            An8xuAYAPW3sDTLrNE29xQ 
_model_server_result.datetime_utc      '2024-11-27 04:09:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7na4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7NA4 
#
_exptl.entry_id    7NA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              537.053 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7NA4 
_cell.length_a            55.736 
_cell.length_b            55.736 
_cell.length_c            101.296 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H33 Cl N6 O3' 
_chem_comp.formula_weight    537.053 
_chem_comp.id                1I9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O31 C30 1I9 doub 1 n n 
O32 C30 1I9 sing 2 n n 
O32 N33 1I9 sing 3 n n 
C30 N29 1I9 sing 4 n n 
N33 C28 1I9 doub 5 n n 
N29 C28 1I9 sing 6 n n 
C28 C15 1I9 sing 7 n n 
C15 N14 1I9 doub 8 n y 
C15 C16 1I9 sing 9 n y 
CL37 C36 1I9 sing 10 n n 
N14 C13 1I9 sing 11 n y 
C35 C36 1I9 doub 12 n y 
C35 C34 1I9 sing 13 n y 
C16 C17 1I9 doub 14 n y 
C36 C38 1I9 sing 15 n y 
C13 C34 1I9 sing 16 n n 
C13 C12 1I9 doub 17 n y 
C34 C40 1I9 doub 18 n y 
C38 N39 1I9 doub 19 n y 
C17 C12 1I9 sing 20 n y 
C17 N18 1I9 sing 21 n y 
C40 N39 1I9 sing 22 n y 
C12 N11 1I9 sing 23 n y 
N18 C19 1I9 doub 24 n y 
C6 C7 1I9 sing 25 n n 
C6 C5 1I9 sing 26 n n 
C7 C2 1I9 sing 27 n n 
N11 C19 1I9 sing 28 n y 
N11 C8 1I9 sing 29 n n 
C2 C1 1I9 sing 30 n n 
C2 C3 1I9 sing 31 n n 
C19 C20 1I9 sing 32 n n 
C8 C5 1I9 sing 33 n n 
C8 C10 1I9 sing 34 n n 
C5 C4 1I9 sing 35 n n 
C27 C25 1I9 sing 36 n n 
C27 C26 1I9 sing 37 n n 
C4 C3 1I9 sing 38 n n 
C25 C20 1I9 sing 39 n n 
C25 C26 1I9 sing 40 n n 
C20 O22 1I9 sing 41 n n 
O22 C23 1I9 sing 42 n n 
C23 C24 1I9 sing 43 n n 
C1 H1 1I9 sing 44 n n 
C1 H2 1I9 sing 45 n n 
C1 H3 1I9 sing 46 n n 
C2 H4 1I9 sing 47 n n 
C3 H5 1I9 sing 48 n n 
C3 H6 1I9 sing 49 n n 
C4 H7 1I9 sing 50 n n 
C4 H8 1I9 sing 51 n n 
C5 H9 1I9 sing 52 n n 
C6 H10 1I9 sing 53 n n 
C6 H11 1I9 sing 54 n n 
C7 H12 1I9 sing 55 n n 
C7 H13 1I9 sing 56 n n 
C8 H14 1I9 sing 57 n n 
C16 H15 1I9 sing 58 n n 
C23 H16 1I9 sing 59 n n 
C23 H17 1I9 sing 60 n n 
C24 H18 1I9 sing 61 n n 
C24 H19 1I9 sing 62 n n 
C24 H20 1I9 sing 63 n n 
C27 H21 1I9 sing 64 n n 
C27 H22 1I9 sing 65 n n 
C35 H23 1I9 sing 66 n n 
C38 H24 1I9 sing 67 n n 
C40 H25 1I9 sing 68 n n 
C10 H26 1I9 sing 69 n n 
C10 H27 1I9 sing 70 n n 
C10 H28 1I9 sing 71 n n 
C20 H29 1I9 sing 72 n n 
C25 H30 1I9 sing 73 n n 
C26 H31 1I9 sing 74 n n 
C26 H32 1I9 sing 75 n n 
N29 H33 1I9 sing 76 n n 
#
_atom_sites.entry_id                     7NA4 
_atom_sites.fract_transf_matrix[1][1]    0.017942 
_atom_sites.fract_transf_matrix[1][2]    0.010359 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 1I9 A 1 201 1 1I9 INX . 
C 3 GOL A 1 202 1 GOL GOL . 
D 3 GOL A 1 203 2 GOL GOL . 
E 4 CL A 1 204 3 CL CL . 
F 5 HOH A 1 301 28 HOH HOH . 
F 5 HOH A 2 302 16 HOH HOH . 
F 5 HOH A 3 303 14 HOH HOH . 
F 5 HOH A 4 304 1 HOH HOH . 
F 5 HOH A 5 305 8 HOH HOH . 
F 5 HOH A 6 306 2 HOH HOH . 
F 5 HOH A 7 307 24 HOH HOH . 
F 5 HOH A 8 308 7 HOH HOH . 
F 5 HOH A 9 309 23 HOH HOH . 
F 5 HOH A 10 310 10 HOH HOH . 
F 5 HOH A 11 311 19 HOH HOH . 
F 5 HOH A 12 312 9 HOH HOH . 
F 5 HOH A 13 313 17 HOH HOH . 
F 5 HOH A 14 314 11 HOH HOH . 
F 5 HOH A 15 315 13 HOH HOH . 
F 5 HOH A 16 316 4 HOH HOH . 
F 5 HOH A 17 317 21 HOH HOH . 
F 5 HOH A 18 318 6 HOH HOH . 
F 5 HOH A 19 319 12 HOH HOH . 
F 5 HOH A 20 320 20 HOH HOH . 
F 5 HOH A 21 321 15 HOH HOH . 
F 5 HOH A 22 322 3 HOH HOH . 
F 5 HOH A 23 323 18 HOH HOH . 
F 5 HOH A 24 324 27 HOH HOH . 
F 5 HOH A 25 325 26 HOH HOH . 
F 5 HOH A 26 326 29 HOH HOH . 
F 5 HOH A 27 327 22 HOH HOH . 
F 5 HOH A 28 328 25 HOH HOH . 
F 5 HOH A 29 329 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1I9 . . . B 2 -3.701 16.82 -0.454 1 24.24 ? C1 1I9 201 A 1 
HETATM 2 C C2 1I9 . . . B 2 -4.348 15.44 -0.647 1 25.28 ? C2 1I9 201 A 1 
HETATM 3 C C3 1I9 . . . B 2 -4.408 14.748 0.715 1 27.47 ? C3 1I9 201 A 1 
HETATM 4 C C4 1I9 . . . B 2 -4.895 13.331 0.531 1 25.45 ? C4 1I9 201 A 1 
HETATM 5 C C5 1I9 . . . B 2 -6.372 13.289 0.108 1 25.5 ? C5 1I9 201 A 1 
HETATM 6 C C6 1I9 . . . B 2 -6.477 14.101 -1.205 1 25.35 ? C6 1I9 201 A 1 
HETATM 7 C C7 1I9 . . . B 2 -5.785 15.481 -1.128 1 23.02 ? C7 1I9 201 A 1 
HETATM 8 C C8 1I9 . . . B 2 -6.82 11.827 -0.048 1 27 ? C8 1I9 201 A 1 
HETATM 9 C C12 1I9 . . . B 2 -8.256 11.249 -2.082 1 26.65 ? C12 1I9 201 A 1 
HETATM 10 C C15 1I9 . . . B 2 -9.193 10.456 -4.544 1 28.54 ? C15 1I9 201 A 1 
HETATM 11 C C16 1I9 . . . B 2 -10.115 10.948 -3.637 1 30.51 ? C16 1I9 201 A 1 
HETATM 12 C C17 1I9 . . . B 2 -9.64 11.37 -2.376 1 31.65 ? C17 1I9 201 A 1 
HETATM 13 C C19 1I9 . . . B 2 -9.35 12.099 -0.363 1 27.98 ? C19 1I9 201 A 1 
HETATM 14 C C23 1I9 . . . B 2 -10.493 12.024 3.162 1 38.63 ? C23 1I9 201 A 1 
HETATM 15 C C24 1I9 . . . B 2 -10.687 10.819 4.087 1 35.99 ? C24 1I9 201 A 1 
HETATM 16 C C27 1I9 . . . B 2 -9.797 15.22 0.378 1 33.39 ? C27 1I9 201 A 1 
HETATM 17 C C30 1I9 . . . B 2 -10.701 9.703 -7.716 1 54.52 ? C30 1I9 201 A 1 
HETATM 18 C C34 1I9 . . . B 2 -5.955 10.554 -2.969 1 31.24 ? C34 1I9 201 A 1 
HETATM 19 C C35 1I9 . . . B 2 -5.104 11.362 -3.718 1 21.97 ? C35 1I9 201 A 1 
HETATM 20 C C36 1I9 . . . B 2 -3.742 11.131 -3.594 1 27.17 ? C36 1I9 201 A 1 
HETATM 21 C C38 1I9 . . . B 2 -3.256 10.169 -2.71 1 27.13 ? C38 1I9 201 A 1 
HETATM 22 C C40 1I9 . . . B 2 -5.406 9.555 -2.132 1 33.99 ? C40 1I9 201 A 1 
HETATM 23 C C10 1I9 . . . B 2 -6.908 11.005 1.283 1 27.61 ? C10 1I9 201 A 1 
HETATM 24 N N11 1I9 . . . B 2 -8.103 11.72 -0.785 1 26.92 ? N11 1I9 201 A 1 
HETATM 25 C C13 1I9 . . . B 2 -7.405 10.734 -3.085 1 27.91 ? C13 1I9 201 A 1 
HETATM 26 N N14 1I9 . . . B 2 -7.904 10.4 -4.255 1 28.44 ? N14 1I9 201 A 1 
HETATM 27 N N18 1I9 . . . B 2 -10.253 11.886 -1.288 1 27.5 ? N18 1I9 201 A 1 
HETATM 28 C C20 1I9 . . . B 2 -9.658 12.687 0.992 1 30.52 ? C20 1I9 201 A 1 
HETATM 29 O O22 1I9 . . . B 2 -10.275 11.648 1.773 1 27.32 ? O22 1I9 201 A 1 
HETATM 30 C C25 1I9 . . . B 2 -10.524 13.921 0.754 1 33.17 ? C25 1I9 201 A 1 
HETATM 31 C C26 1I9 . . . B 2 -10.447 15.088 1.757 1 25.18 ? C26 1I9 201 A 1 
HETATM 32 C C28 1I9 . . . B 2 -9.59 10.063 -5.903 1 36.29 ? C28 1I9 201 A 1 
HETATM 33 N N29 1I9 . . . B 2 -10.868 10.056 -6.412 1 42.3 ? N29 1I9 201 A 1 
HETATM 34 O O31 1I9 . . . B 2 -11.587 9.593 -8.547 1 67.03 ? O31 1I9 201 A 1 
HETATM 35 O O32 1I9 . . . B 2 -9.378 9.518 -7.912 1 56.25 ? O32 1I9 201 A 1 
HETATM 36 N N33 1I9 . . . B 2 -8.78 9.759 -6.875 1 49.17 ? N33 1I9 201 A 1 
HETATM 37 CL CL37 1I9 . . . B 2 -2.643 12.09 -4.47 1 31.68 ? CL37 1I9 201 A 1 
HETATM 38 N N39 1I9 . . . B 2 -4.089 9.403 -2.037 1 28.77 ? N39 1I9 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           38 
#