data_7NA4 # _model_server_result.job_id iBJq4lZ3-wpeYWTF2cTkaQ _model_server_result.datetime_utc '2024-11-23 11:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7na4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7NA4 # _exptl.entry_id 7NA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NA4 _cell.length_a 55.736 _cell.length_b 55.736 _cell.length_c 101.296 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 205 n n C1 C2 GOL sing 206 n n C1 H11 GOL sing 207 n n C1 H12 GOL sing 208 n n O1 HO1 GOL sing 209 n n C2 O2 GOL sing 210 n n C2 C3 GOL sing 211 n n C2 H2 GOL sing 212 n n O2 HO2 GOL sing 213 n n C3 O3 GOL sing 214 n n C3 H31 GOL sing 215 n n C3 H32 GOL sing 216 n n O3 HO3 GOL sing 217 n n # _atom_sites.entry_id 7NA4 _atom_sites.fract_transf_matrix[1][1] 0.017942 _atom_sites.fract_transf_matrix[1][2] 0.010359 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1I9 A 1 201 1 1I9 INX . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 4 CL A 1 204 3 CL CL . F 5 HOH A 1 301 28 HOH HOH . F 5 HOH A 2 302 16 HOH HOH . F 5 HOH A 3 303 14 HOH HOH . F 5 HOH A 4 304 1 HOH HOH . F 5 HOH A 5 305 8 HOH HOH . F 5 HOH A 6 306 2 HOH HOH . F 5 HOH A 7 307 24 HOH HOH . F 5 HOH A 8 308 7 HOH HOH . F 5 HOH A 9 309 23 HOH HOH . F 5 HOH A 10 310 10 HOH HOH . F 5 HOH A 11 311 19 HOH HOH . F 5 HOH A 12 312 9 HOH HOH . F 5 HOH A 13 313 17 HOH HOH . F 5 HOH A 14 314 11 HOH HOH . F 5 HOH A 15 315 13 HOH HOH . F 5 HOH A 16 316 4 HOH HOH . F 5 HOH A 17 317 21 HOH HOH . F 5 HOH A 18 318 6 HOH HOH . F 5 HOH A 19 319 12 HOH HOH . F 5 HOH A 20 320 20 HOH HOH . F 5 HOH A 21 321 15 HOH HOH . F 5 HOH A 22 322 3 HOH HOH . F 5 HOH A 23 323 18 HOH HOH . F 5 HOH A 24 324 27 HOH HOH . F 5 HOH A 25 325 26 HOH HOH . F 5 HOH A 26 326 29 HOH HOH . F 5 HOH A 27 327 22 HOH HOH . F 5 HOH A 28 328 25 HOH HOH . F 5 HOH A 29 329 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 2.399 -2.01 -9.549 0.5 35.66 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 1.816 -3.307 -9.504 0.5 48.89 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 2.254 -1.378 -8.172 0.5 40.43 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 2.696 -2.263 -7.138 0.5 45.3 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 3.113 -0.148 -8.032 0.5 38.69 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 3.829 -0.301 -6.805 0.5 56.12 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #