data_7NAJ
#
_model_server_result.job_id            ki33-9E64CZPPM1RRaWnOw 
_model_server_result.datetime_utc      '2024-11-17 23:26:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7naj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    7NAJ 
#
_exptl.entry_id    7NAJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              296.081 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NAJ 
_cell.length_a            85.511 
_cell.length_b            117.063 
_cell.length_c            33.043 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE2 GLU 86 A GLU 642 1_555 C C 1LK . A 1LK 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale2 B OE2 GLU 86 B GLU 642 1_555 D C 1LK . B 1LK 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
#
_chem_comp.formula           'C5 H11 F O9 P2' 
_chem_comp.formula_weight    296.081 
_chem_comp.id                1LK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 P1 1LK sing 1 n n 
O7 P1 1LK sing 2 n n 
P1 O5 1LK doub 3 n n 
P1 O4 1LK sing 4 n n 
O4 P 1LK sing 5 n n 
F C1 1LK sing 6 n n 
P O3 1LK sing 7 n n 
P O2 1LK doub 8 n n 
P O1 1LK sing 9 n n 
C4 O1 1LK sing 10 n n 
C4 C3 1LK sing 11 n n 
C O 1LK sing 12 n n 
C C1 1LK sing 13 n n 
O C3 1LK sing 14 n n 
C2 C1 1LK sing 15 n n 
C2 C3 1LK sing 16 n n 
C2 O8 1LK sing 17 n n 
C1 H1 1LK sing 18 n n 
C2 H2 1LK sing 19 n n 
C3 H3 1LK sing 20 n n 
C4 H5 1LK sing 21 n n 
C4 H6 1LK sing 22 n n 
O3 H7 1LK sing 23 n n 
C H4 1LK sing 24 n n 
C H11 1LK sing 25 n n 
O6 H8 1LK sing 26 n n 
O7 H9 1LK sing 27 n n 
O8 H10 1LK sing 28 n n 
#
_atom_sites.entry_id                     7NAJ 
_atom_sites.fract_transf_matrix[1][1]    0.011694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1LK A 1 801 801 1LK ARA . 
D 2 1LK B 1 801 801 1LK ARA . 
E 3 HOH A 1 901 114 HOH HOH . 
E 3 HOH A 2 902 76 HOH HOH . 
E 3 HOH A 3 903 14 HOH HOH . 
E 3 HOH A 4 904 126 HOH HOH . 
E 3 HOH A 5 905 148 HOH HOH . 
E 3 HOH A 6 906 94 HOH HOH . 
E 3 HOH A 7 907 127 HOH HOH . 
E 3 HOH A 8 908 66 HOH HOH . 
E 3 HOH A 9 909 65 HOH HOH . 
E 3 HOH A 10 910 8 HOH HOH . 
E 3 HOH A 11 911 31 HOH HOH . 
E 3 HOH A 12 912 46 HOH HOH . 
E 3 HOH A 13 913 24 HOH HOH . 
E 3 HOH A 14 914 132 HOH HOH . 
E 3 HOH A 15 915 109 HOH HOH . 
E 3 HOH A 16 916 33 HOH HOH . 
E 3 HOH A 17 917 25 HOH HOH . 
E 3 HOH A 18 918 19 HOH HOH . 
E 3 HOH A 19 919 170 HOH HOH . 
E 3 HOH A 20 920 4 HOH HOH . 
E 3 HOH A 21 921 7 HOH HOH . 
E 3 HOH A 22 922 144 HOH HOH . 
E 3 HOH A 23 923 80 HOH HOH . 
E 3 HOH A 24 924 120 HOH HOH . 
E 3 HOH A 25 925 48 HOH HOH . 
E 3 HOH A 26 926 13 HOH HOH . 
E 3 HOH A 27 927 71 HOH HOH . 
E 3 HOH A 28 928 64 HOH HOH . 
E 3 HOH A 29 929 84 HOH HOH . 
E 3 HOH A 30 930 145 HOH HOH . 
E 3 HOH A 31 931 38 HOH HOH . 
E 3 HOH A 32 932 134 HOH HOH . 
E 3 HOH A 33 933 59 HOH HOH . 
E 3 HOH A 34 934 176 HOH HOH . 
E 3 HOH A 35 935 49 HOH HOH . 
E 3 HOH A 36 936 61 HOH HOH . 
E 3 HOH A 37 937 60 HOH HOH . 
E 3 HOH A 38 938 63 HOH HOH . 
E 3 HOH A 39 939 1 HOH HOH . 
E 3 HOH A 40 940 158 HOH HOH . 
E 3 HOH A 41 941 124 HOH HOH . 
E 3 HOH A 42 942 85 HOH HOH . 
E 3 HOH A 43 943 75 HOH HOH . 
E 3 HOH A 44 944 81 HOH HOH . 
E 3 HOH A 45 945 55 HOH HOH . 
E 3 HOH A 46 946 149 HOH HOH . 
E 3 HOH A 47 947 34 HOH HOH . 
E 3 HOH A 48 948 69 HOH HOH . 
E 3 HOH A 49 949 115 HOH HOH . 
E 3 HOH A 50 950 22 HOH HOH . 
E 3 HOH A 51 951 53 HOH HOH . 
E 3 HOH A 52 952 6 HOH HOH . 
E 3 HOH A 53 953 140 HOH HOH . 
E 3 HOH A 54 954 110 HOH HOH . 
E 3 HOH A 55 955 54 HOH HOH . 
E 3 HOH A 56 956 99 HOH HOH . 
E 3 HOH A 57 957 146 HOH HOH . 
E 3 HOH A 58 958 74 HOH HOH . 
E 3 HOH A 59 959 159 HOH HOH . 
E 3 HOH A 60 960 133 HOH HOH . 
E 3 HOH A 61 961 92 HOH HOH . 
F 3 HOH B 1 901 10 HOH HOH . 
F 3 HOH B 2 902 118 HOH HOH . 
F 3 HOH B 3 903 27 HOH HOH . 
F 3 HOH B 4 904 73 HOH HOH . 
F 3 HOH B 5 905 20 HOH HOH . 
F 3 HOH B 6 906 95 HOH HOH . 
F 3 HOH B 7 907 50 HOH HOH . 
F 3 HOH B 8 908 43 HOH HOH . 
F 3 HOH B 9 909 12 HOH HOH . 
F 3 HOH B 10 910 86 HOH HOH . 
F 3 HOH B 11 911 16 HOH HOH . 
F 3 HOH B 12 912 3 HOH HOH . 
F 3 HOH B 13 913 125 HOH HOH . 
F 3 HOH B 14 914 130 HOH HOH . 
F 3 HOH B 15 915 35 HOH HOH . 
F 3 HOH B 16 916 56 HOH HOH . 
F 3 HOH B 17 917 106 HOH HOH . 
F 3 HOH B 18 918 2 HOH HOH . 
F 3 HOH B 19 919 41 HOH HOH . 
F 3 HOH B 20 920 90 HOH HOH . 
F 3 HOH B 21 921 44 HOH HOH . 
F 3 HOH B 22 922 47 HOH HOH . 
F 3 HOH B 23 923 62 HOH HOH . 
F 3 HOH B 24 924 11 HOH HOH . 
F 3 HOH B 25 925 113 HOH HOH . 
F 3 HOH B 26 926 91 HOH HOH . 
F 3 HOH B 27 927 151 HOH HOH . 
F 3 HOH B 28 928 88 HOH HOH . 
F 3 HOH B 29 929 68 HOH HOH . 
F 3 HOH B 30 930 36 HOH HOH . 
F 3 HOH B 31 931 39 HOH HOH . 
F 3 HOH B 32 932 18 HOH HOH . 
F 3 HOH B 33 933 121 HOH HOH . 
F 3 HOH B 34 934 141 HOH HOH . 
F 3 HOH B 35 935 112 HOH HOH . 
F 3 HOH B 36 936 156 HOH HOH . 
F 3 HOH B 37 937 108 HOH HOH . 
F 3 HOH B 38 938 142 HOH HOH . 
F 3 HOH B 39 939 173 HOH HOH . 
F 3 HOH B 40 940 83 HOH HOH . 
F 3 HOH B 41 941 51 HOH HOH . 
F 3 HOH B 42 942 70 HOH HOH . 
F 3 HOH B 43 943 15 HOH HOH . 
F 3 HOH B 44 944 96 HOH HOH . 
F 3 HOH B 45 945 23 HOH HOH . 
F 3 HOH B 46 946 105 HOH HOH . 
F 3 HOH B 47 947 89 HOH HOH . 
F 3 HOH B 48 948 102 HOH HOH . 
F 3 HOH B 49 949 5 HOH HOH . 
F 3 HOH B 50 950 128 HOH HOH . 
F 3 HOH B 51 951 137 HOH HOH . 
F 3 HOH B 52 952 171 HOH HOH . 
F 3 HOH B 53 953 45 HOH HOH . 
F 3 HOH B 54 954 155 HOH HOH . 
F 3 HOH B 55 955 57 HOH HOH . 
F 3 HOH B 56 956 168 HOH HOH . 
F 3 HOH B 57 957 152 HOH HOH . 
F 3 HOH B 58 958 139 HOH HOH . 
F 3 HOH B 59 959 167 HOH HOH . 
F 3 HOH B 60 960 97 HOH HOH . 
F 3 HOH B 61 961 107 HOH HOH . 
F 3 HOH B 62 962 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1LK . . . D 2 18.426 53.708 6.944 1 36.6 ? C1 1LK 801 B 1 
HETATM 2 C C2 1LK . . . D 2 17.371 52.622 6.944 1 33.61 ? C2 1LK 801 B 1 
HETATM 3 C C3 1LK . . . D 2 16.062 53.349 6.731 1 38.59 ? C3 1LK 801 B 1 
HETATM 4 C C4 1LK . . . D 2 14.965 52.966 7.695 1 48.97 ? C4 1LK 801 B 1 
HETATM 5 O O1 1LK . . . D 2 13.753 52.684 6.975 1 50.32 ? O1 1LK 801 B 1 
HETATM 6 O O2 1LK . . . D 2 12.18 50.736 7.171 1 54.46 ? O2 1LK 801 B 1 
HETATM 7 O O3 1LK . . . D 2 11.3 53.07 7.387 1 72.37 ? O3 1LK 801 B 1 
HETATM 8 O O4 1LK . . . D 2 12.718 52.098 9.228 1 76.5 ? O4 1LK 801 B 1 
HETATM 9 O O5 1LK . . . D 2 10.737 52.971 10.589 1 68.6 ? O5 1LK 801 B 1 
HETATM 10 C C 1LK . . . D 2 17.644 54.881 7.501 1 36.45 ? C 1LK 801 B 1 
HETATM 11 O O 1LK . . . D 2 16.276 54.708 7.156 1 35.56 ? O 1LK 801 B 1 
HETATM 12 F F 1LK . . . D 2 19.471 53.317 7.797 1 34.44 ? F 1LK 801 B 1 
HETATM 13 O O6 1LK . . . D 2 12.945 52.344 11.68 1 80.25 ? O6 1LK 801 B 1 
HETATM 14 O O7 1LK . . . D 2 12.823 54.355 10.235 1 78.75 ? O7 1LK 801 B 1 
HETATM 15 O O8 1LK . . . D 2 17.729 51.884 5.776 1 33.66 ? O8 1LK 801 B 1 
HETATM 16 P P 1LK . . . D 2 12.439 52.094 7.66 1 61.78 ? P 1LK 801 B 1 
HETATM 17 P P1 1LK . . . D 2 12.231 52.969 10.477 1 75.08 ? P1 1LK 801 B 1 
HETATM 18 H H1 1LK . . . D 2 18.873 53.925 5.976 1 43.9 ? H1 1LK 801 B 1 
HETATM 19 H H2 1LK . . . D 2 17.253 52.055 7.866 1 40.31 ? H2 1LK 801 B 1 
HETATM 20 H H3 1LK . . . D 2 15.783 53.288 5.68 1 46.29 ? H3 1LK 801 B 1 
HETATM 21 H H5 1LK . . . D 2 15.225 52.079 8.271 1 58.74 ? H5 1LK 801 B 1 
HETATM 22 H H6 1LK . . . D 2 14.753 53.766 8.403 1 58.74 ? H6 1LK 801 B 1 
HETATM 23 H H7 1LK . . . D 2 10.35 52.784 7.436 1 86.83 ? H7 1LK 801 B 1 
HETATM 24 H H4 1LK . . . D 2 17.694 54.969 8.585 1 43.73 ? H4 1LK 801 B 1 
HETATM 25 H H8 1LK . . . D 2 13.933 52.252 11.728 1 96.29 ? H8 1LK 801 B 1 
HETATM 26 H H9 1LK . . . D 2 13.769 54.651 10.295 1 94.48 ? H9 1LK 801 B 1 
HETATM 27 H H10 1LK . . . D 2 17.091 51.124 5.737 1 40.37 ? H10 1LK 801 B 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#