data_7NAK
#
_model_server_result.job_id            ozOY5b64aITmogjB0vcwqg 
_model_server_result.datetime_utc      '2024-11-17 23:31:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":801}' 
#
_entry.id    7NAK 
#
_exptl.entry_id    7NAK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              797.364 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NAK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C24 H28 I N6 O13 P2 1' 
_chem_comp.formula_weight    797.364 
_chem_comp.id                1QD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O34 C03 1QD sing 1 n n 
C03 C04 1QD sing 2 n n 
C03 C02 1QD sing 3 n n 
C04 C05 1QD sing 4 n n 
C04 O33 1QD sing 5 n n 
O32 P07 1QD doub 6 n n 
C05 O06 1QD sing 7 n n 
O35 C02 1QD sing 8 n n 
O33 C01 1QD sing 9 n n 
O06 P07 1QD sing 10 n n 
O31 P07 1QD sing 11 n n 
C02 C01 1QD sing 12 n n 
P07 O08 1QD sing 13 n n 
C01 N36 1QD sing 14 n n 
O08 P09 1QD sing 15 n n 
N36 C37 1QD doub 16 n y 
N36 C41 1QD sing 17 n y 
C37 C38 1QD sing 18 n y 
O30 P09 1QD doub 19 n n 
P09 O10 1QD sing 20 n n 
P09 O11 1QD sing 21 n n 
C41 C40 1QD doub 22 n y 
C38 C45 1QD sing 23 n y 
C38 C39 1QD doub 24 n y 
O11 C12 1QD sing 25 n n 
C40 C39 1QD sing 26 n y 
C45 C44 1QD doub 27 n y 
C39 C42 1QD sing 28 n y 
C12 C13 1QD sing 29 n n 
C44 C43 1QD sing 30 n y 
C13 O17 1QD sing 31 n n 
C13 C14 1QD sing 32 n n 
C42 C43 1QD doub 33 n y 
C42 I46 1QD sing 34 n n 
O29 C14 1QD sing 35 n n 
O17 C16 1QD sing 36 n n 
C14 C15 1QD sing 37 n n 
C16 C15 1QD sing 38 n n 
C16 N18 1QD sing 39 n n 
C15 O28 1QD sing 40 n n 
N18 C19 1QD sing 41 n y 
N18 C22 1QD sing 42 n y 
C19 N20 1QD doub 43 n y 
C22 N23 1QD doub 44 n y 
C22 C21 1QD sing 45 n y 
N23 C24 1QD sing 46 n y 
N20 C21 1QD sing 47 n y 
C21 C26 1QD doub 48 n y 
C24 N25 1QD doub 49 n y 
C26 N25 1QD sing 50 n y 
C26 N27 1QD sing 51 n n 
O10 H1 1QD sing 52 n n 
C13 H131 1QD sing 53 n n 
C15 H151 1QD sing 54 n n 
C16 H161 1QD sing 55 n n 
C19 H2 1QD sing 56 n n 
C01 H011 1QD sing 57 n n 
C02 H021 1QD sing 58 n n 
C03 H031 1QD sing 59 n n 
C04 H041 1QD sing 60 n n 
C05 H3 1QD sing 61 n n 
C05 H4 1QD sing 62 n n 
C12 H5 1QD sing 63 n n 
C12 H6 1QD sing 64 n n 
C14 H141 1QD sing 65 n n 
C24 H7 1QD sing 66 n n 
C37 H8 1QD sing 67 n n 
C40 H9 1QD sing 68 n n 
C41 H10 1QD sing 69 n n 
C43 H11 1QD sing 70 n n 
C44 H12 1QD sing 71 n n 
C45 H13 1QD sing 72 n n 
N27 H14 1QD sing 73 n n 
N27 H15 1QD sing 74 n n 
O28 H16 1QD sing 75 n n 
O29 H17 1QD sing 76 n n 
O31 H18 1QD sing 77 n n 
O34 H19 1QD sing 78 n n 
O35 H20 1QD sing 79 n n 
#
_atom_sites.entry_id                     7NAK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 1QD D 1 801 801 1QD 1AD . 
J 2 1QD C 1 801 801 1QD 1AD . 
K 2 1QD G 1 801 801 1QD 1AD . 
L 2 1QD B 1 801 801 1QD 1AD . 
M 2 1QD A 1 801 801 1QD 1AD . 
N 2 1QD E 1 801 801 1QD 1AD . 
O 2 1QD F 1 801 801 1QD 1AD . 
P 2 1QD H 1 801 801 1QD 1AD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 1QD . . . J 2 157.077 175.606 201.019 1 30.53 ? O10 1QD 801 C 1 
HETATM 2 C C13 1QD . . . J 2 158.047 174.54 205.309 1 30.53 ? C13 1QD 801 C 1 
HETATM 3 C C15 1QD . . . J 2 156.5 175.356 206.841 1 30.53 ? C15 1QD 801 C 1 
HETATM 4 C C16 1QD . . . J 2 157.741 174.846 207.584 1 30.53 ? C16 1QD 801 C 1 
HETATM 5 C C19 1QD . . . J 2 158.191 177.223 208.295 1 30.53 ? C19 1QD 801 C 1 
HETATM 6 C C01 1QD . . . J 2 165.055 176.506 201.48 1 30.53 ? C01 1QD 801 C 1 
HETATM 7 C C02 1QD . . . J 2 165.789 175.18 201.242 1 30.53 ? C02 1QD 801 C 1 
HETATM 8 C C03 1QD . . . J 2 164.735 174.315 200.555 1 30.53 ? C03 1QD 801 C 1 
HETATM 9 C C04 1QD . . . J 2 163.863 175.335 199.844 1 30.53 ? C04 1QD 801 C 1 
HETATM 10 C C05 1QD . . . J 2 162.439 174.846 199.824 1 30.53 ? C05 1QD 801 C 1 
HETATM 11 C C12 1QD . . . J 2 159.093 174.846 204.268 1 30.53 ? C12 1QD 801 C 1 
HETATM 12 C C14 1QD . . . J 2 157.091 175.711 205.483 1 30.53 ? C14 1QD 801 C 1 
HETATM 13 C C21 1QD . . . J 2 159.709 176.85 209.826 1 30.53 ? C21 1QD 801 C 1 
HETATM 14 C C22 1QD . . . J 2 159.336 175.653 209.315 1 30.53 ? C22 1QD 801 C 1 
HETATM 15 C C24 1QD . . . J 2 160.828 174.53 210.739 1 30.53 ? C24 1QD 801 C 1 
HETATM 16 C C26 1QD . . . J 2 160.713 176.851 210.861 1 30.53 ? C26 1QD 801 C 1 
HETATM 17 C C37 1QD . . . J 2 163.323 177.194 203.144 1 30.53 ? C37 1QD 801 C 1 
HETATM 18 C C38 1QD . . . J 2 162.761 177.323 204.455 1 30.53 ? C38 1QD 801 C 1 
HETATM 19 C C39 1QD . . . J 2 163.469 176.837 205.533 1 30.53 ? C39 1QD 801 C 1 
HETATM 20 C C40 1QD . . . J 2 164.737 176.217 205.302 1 30.53 ? C40 1QD 801 C 1 
HETATM 21 C C41 1QD . . . J 2 165.219 176.127 203.988 1 30.53 ? C41 1QD 801 C 1 
HETATM 22 C C42 1QD . . . J 2 162.926 176.955 206.855 1 30.53 ? C42 1QD 801 C 1 
HETATM 23 C C43 1QD . . . J 2 161.682 177.567 207.045 1 30.53 ? C43 1QD 801 C 1 
HETATM 24 C C44 1QD . . . J 2 160.964 178.064 205.948 1 30.53 ? C44 1QD 801 C 1 
HETATM 25 C C45 1QD . . . J 2 161.491 177.947 204.654 1 30.53 ? C45 1QD 801 C 1 
HETATM 26 I I46 1QD . . . J 2 163.993 176.213 208.508 1 30.53 ? I46 1QD 801 C 1 
HETATM 27 N N18 1QD . . . J 2 158.393 175.89 208.368 1 30.53 ? N18 1QD 801 C 1 
HETATM 28 N N20 1QD . . . J 2 158.978 177.82 209.173 1 30.53 ? N20 1QD 801 C 1 
HETATM 29 N N23 1QD . . . J 2 159.91 174.476 209.784 1 30.53 ? N23 1QD 801 C 1 
HETATM 30 N N25 1QD . . . J 2 161.232 175.682 211.275 1 30.53 ? N25 1QD 801 C 1 
HETATM 31 N N27 1QD . . . J 2 161.159 178.104 211.453 1 30.53 ? N27 1QD 801 C 1 
HETATM 32 N N36 1QD . . . J 2 164.502 176.613 202.962 1 30.53 ? N36 1QD 801 C 1 
HETATM 33 O O06 1QD . . . J 2 161.569 175.993 199.824 1 30.53 ? O06 1QD 801 C 1 
HETATM 34 O O08 1QD . . . J 2 159.467 176.417 201.289 1 30.53 ? O08 1QD 801 C 1 
HETATM 35 O O11 1QD . . . J 2 158.499 174.635 202.971 1 30.53 ? O11 1QD 801 C 1 
HETATM 36 O O17 1QD . . . J 2 158.653 174.361 206.608 1 30.53 ? O17 1QD 801 C 1 
HETATM 37 O O28 1QD . . . J 2 155.544 174.312 206.7 1 30.53 ? O28 1QD 801 C 1 
HETATM 38 O O29 1QD . . . J 2 156.082 175.716 204.479 1 30.53 ? O29 1QD 801 C 1 
HETATM 39 O O30 1QD . . . J 2 157.663 177.048 202.904 1 30.53 ? O30 1QD 801 C 1 
HETATM 40 O O31 1QD . . . J 2 159.315 176.43 198.795 1 30.53 ? O31 1QD 801 C 1 
HETATM 41 O O32 1QD . . . J 2 159.684 174.324 199.896 1 30.53 ? O32 1QD 801 C 1 
HETATM 42 O O33 1QD . . . J 2 163.96 176.563 200.594 1 30.53 ? O33 1QD 801 C 1 
HETATM 43 O O34 1QD . . . J 2 165.35 173.453 199.605 1 30.53 ? O34 1QD 801 C 1 
HETATM 44 O O35 1QD . . . J 2 166.91 175.361 200.382 1 30.53 ? O35 1QD 801 C 1 
HETATM 45 P P07 1QD . . . J 2 159.993 175.769 199.928 1 30.53 ? P07 1QD 801 C 1 
HETATM 46 P P09 1QD . . . J 2 158.151 175.953 202.045 1 30.53 ? P09 1QD 801 C 1 
HETATM 47 H H131 1QD . . . J 2 157.484 173.635 205.03 1 30.53 ? H131 1QD 801 C 1 
HETATM 48 H H151 1QD . . . J 2 156.042 176.253 207.34 1 30.53 ? H151 1QD 801 C 1 
HETATM 49 H H161 1QD . . . J 2 157.417 173.924 208.322 1 30.53 ? H161 1QD 801 C 1 
HETATM 50 H H011 1QD . . . J 2 165.723 177.323 201.278 1 30.53 ? H011 1QD 801 C 1 
HETATM 51 H H021 1QD . . . J 2 166.127 174.679 202.265 1 30.53 ? H021 1QD 801 C 1 
HETATM 52 H H031 1QD . . . J 2 164.081 173.678 201.381 1 30.53 ? H031 1QD 801 C 1 
HETATM 53 H H041 1QD . . . J 2 164.225 175.491 198.824 1 30.53 ? H041 1QD 801 C 1 
HETATM 54 H H141 1QD . . . J 2 157.694 176.778 205.528 1 30.53 ? H141 1QD 801 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#