data_7NAK
#
_model_server_result.job_id            i-zuqBkRsT16-2W4dWCB-w 
_model_server_result.datetime_utc      '2024-11-17 23:37:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":801}' 
#
_entry.id    7NAK 
#
_exptl.entry_id    7NAK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              797.364 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NAK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C24 H28 I N6 O13 P2 1' 
_chem_comp.formula_weight    797.364 
_chem_comp.id                1QD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O34 C03 1QD sing 1 n n 
C03 C04 1QD sing 2 n n 
C03 C02 1QD sing 3 n n 
C04 C05 1QD sing 4 n n 
C04 O33 1QD sing 5 n n 
O32 P07 1QD doub 6 n n 
C05 O06 1QD sing 7 n n 
O35 C02 1QD sing 8 n n 
O33 C01 1QD sing 9 n n 
O06 P07 1QD sing 10 n n 
O31 P07 1QD sing 11 n n 
C02 C01 1QD sing 12 n n 
P07 O08 1QD sing 13 n n 
C01 N36 1QD sing 14 n n 
O08 P09 1QD sing 15 n n 
N36 C37 1QD doub 16 n y 
N36 C41 1QD sing 17 n y 
C37 C38 1QD sing 18 n y 
O30 P09 1QD doub 19 n n 
P09 O10 1QD sing 20 n n 
P09 O11 1QD sing 21 n n 
C41 C40 1QD doub 22 n y 
C38 C45 1QD sing 23 n y 
C38 C39 1QD doub 24 n y 
O11 C12 1QD sing 25 n n 
C40 C39 1QD sing 26 n y 
C45 C44 1QD doub 27 n y 
C39 C42 1QD sing 28 n y 
C12 C13 1QD sing 29 n n 
C44 C43 1QD sing 30 n y 
C13 O17 1QD sing 31 n n 
C13 C14 1QD sing 32 n n 
C42 C43 1QD doub 33 n y 
C42 I46 1QD sing 34 n n 
O29 C14 1QD sing 35 n n 
O17 C16 1QD sing 36 n n 
C14 C15 1QD sing 37 n n 
C16 C15 1QD sing 38 n n 
C16 N18 1QD sing 39 n n 
C15 O28 1QD sing 40 n n 
N18 C19 1QD sing 41 n y 
N18 C22 1QD sing 42 n y 
C19 N20 1QD doub 43 n y 
C22 N23 1QD doub 44 n y 
C22 C21 1QD sing 45 n y 
N23 C24 1QD sing 46 n y 
N20 C21 1QD sing 47 n y 
C21 C26 1QD doub 48 n y 
C24 N25 1QD doub 49 n y 
C26 N25 1QD sing 50 n y 
C26 N27 1QD sing 51 n n 
O10 H1 1QD sing 52 n n 
C13 H131 1QD sing 53 n n 
C15 H151 1QD sing 54 n n 
C16 H161 1QD sing 55 n n 
C19 H2 1QD sing 56 n n 
C01 H011 1QD sing 57 n n 
C02 H021 1QD sing 58 n n 
C03 H031 1QD sing 59 n n 
C04 H041 1QD sing 60 n n 
C05 H3 1QD sing 61 n n 
C05 H4 1QD sing 62 n n 
C12 H5 1QD sing 63 n n 
C12 H6 1QD sing 64 n n 
C14 H141 1QD sing 65 n n 
C24 H7 1QD sing 66 n n 
C37 H8 1QD sing 67 n n 
C40 H9 1QD sing 68 n n 
C41 H10 1QD sing 69 n n 
C43 H11 1QD sing 70 n n 
C44 H12 1QD sing 71 n n 
C45 H13 1QD sing 72 n n 
N27 H14 1QD sing 73 n n 
N27 H15 1QD sing 74 n n 
O28 H16 1QD sing 75 n n 
O29 H17 1QD sing 76 n n 
O31 H18 1QD sing 77 n n 
O34 H19 1QD sing 78 n n 
O35 H20 1QD sing 79 n n 
#
_atom_sites.entry_id                     7NAK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 1QD D 1 801 801 1QD 1AD . 
J 2 1QD C 1 801 801 1QD 1AD . 
K 2 1QD G 1 801 801 1QD 1AD . 
L 2 1QD B 1 801 801 1QD 1AD . 
M 2 1QD A 1 801 801 1QD 1AD . 
N 2 1QD E 1 801 801 1QD 1AD . 
O 2 1QD F 1 801 801 1QD 1AD . 
P 2 1QD H 1 801 801 1QD 1AD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 1QD . . . N 2 152.969 153.476 120.741 1 40.59 ? O10 1QD 801 E 1 
HETATM 2 C C13 1QD . . . N 2 152.582 152.753 116.325 1 40.59 ? C13 1QD 801 E 1 
HETATM 3 C C15 1QD . . . N 2 151.934 153.457 114.173 1 40.59 ? C15 1QD 801 E 1 
HETATM 4 C C16 1QD . . . N 2 153.183 152.573 114.087 1 40.59 ? C16 1QD 801 E 1 
HETATM 5 C C19 1QD . . . N 2 151.902 150.539 113.399 1 40.59 ? C19 1QD 801 E 1 
HETATM 6 C C01 1QD . . . N 2 157.926 147.844 120.485 1 40.59 ? C01 1QD 801 E 1 
HETATM 7 C C02 1QD . . . N 2 159.147 148.762 120.638 1 40.59 ? C02 1QD 801 E 1 
HETATM 8 C C03 1QD . . . N 2 158.87 149.501 121.943 1 40.59 ? C03 1QD 801 E 1 
HETATM 9 C C04 1QD . . . N 2 157.352 149.498 121.999 1 40.59 ? C04 1QD 801 E 1 
HETATM 10 C C05 1QD . . . N 2 156.79 150.662 121.226 1 40.59 ? C05 1QD 801 E 1 
HETATM 11 C C12 1QD . . . N 2 152.266 151.798 117.446 1 40.59 ? C12 1QD 801 E 1 
HETATM 12 C C14 1QD . . . N 2 151.329 153.038 115.511 1 40.59 ? C14 1QD 801 E 1 
HETATM 13 C C21 1QD . . . N 2 153.092 149.901 111.671 1 40.59 ? C21 1QD 801 E 1 
HETATM 14 C C22 1QD . . . N 2 153.666 151.022 112.175 1 40.59 ? C22 1QD 801 E 1 
HETATM 15 C C24 1QD . . . N 2 155.341 150.954 110.518 1 40.59 ? C24 1QD 801 E 1 
HETATM 16 C C26 1QD . . . N 2 153.708 149.293 110.515 1 40.59 ? C26 1QD 801 E 1 
HETATM 17 C C37 1QD . . . N 2 156.046 148.238 118.878 1 40.59 ? C37 1QD 801 E 1 
HETATM 18 C C38 1QD . . . N 2 155.474 148.379 117.571 1 40.59 ? C38 1QD 801 E 1 
HETATM 19 C C39 1QD . . . N 2 156.292 148.245 116.47 1 40.59 ? C39 1QD 801 E 1 
HETATM 20 C C40 1QD . . . N 2 157.679 147.973 116.672 1 40.59 ? C40 1QD 801 E 1 
HETATM 21 C C41 1QD . . . N 2 158.168 147.849 117.979 1 40.59 ? C41 1QD 801 E 1 
HETATM 22 C C42 1QD . . . N 2 155.749 148.379 115.151 1 40.59 ? C42 1QD 801 E 1 
HETATM 23 C C43 1QD . . . N 2 154.388 148.647 114.985 1 40.59 ? C43 1QD 801 E 1 
HETATM 24 C C44 1QD . . . N 2 153.555 148.782 116.105 1 40.59 ? C44 1QD 801 E 1 
HETATM 25 C C45 1QD . . . N 2 154.082 148.652 117.397 1 40.59 ? C45 1QD 801 E 1 
HETATM 26 I I46 1QD . . . N 2 156.997 148.177 113.466 1 40.59 ? I46 1QD 801 E 1 
HETATM 27 N N18 1QD . . . N 2 152.92 151.411 113.246 1 40.59 ? N18 1QD 801 E 1 
HETATM 28 N N20 1QD . . . N 2 151.992 149.619 112.454 1 40.59 ? N20 1QD 801 E 1 
HETATM 29 N N23 1QD . . . N 2 154.811 151.549 111.58 1 40.59 ? N23 1QD 801 E 1 
HETATM 30 N N25 1QD . . . N 2 154.815 149.849 109.984 1 40.59 ? N25 1QD 801 E 1 
HETATM 31 N N27 1QD . . . N 2 153.137 148.085 109.928 1 40.59 ? N27 1QD 801 E 1 
HETATM 32 N N36 1QD . . . N 2 157.34 147.985 119.025 1 40.59 ? N36 1QD 801 E 1 
HETATM 33 O O06 1QD . . . N 2 155.436 150.326 120.86 1 40.59 ? O06 1QD 801 E 1 
HETATM 34 O O08 1QD . . . N 2 152.901 150.93 120.916 1 40.59 ? O08 1QD 801 E 1 
HETATM 35 O O11 1QD . . . N 2 153.141 152.089 118.554 1 40.59 ? O11 1QD 801 E 1 
HETATM 36 O O17 1QD . . . N 2 153.519 152.153 115.402 1 40.59 ? O17 1QD 801 E 1 
HETATM 37 O O28 1QD . . . N 2 152.297 154.834 114.198 1 40.59 ? O28 1QD 801 E 1 
HETATM 38 O O29 1QD . . . N 2 150.583 154.105 116.086 1 40.59 ? O29 1QD 801 E 1 
HETATM 39 O O30 1QD . . . N 2 151.009 152.248 119.941 1 40.59 ? O30 1QD 801 E 1 
HETATM 40 O O31 1QD . . . N 2 154.028 149.868 122.887 1 40.59 ? O31 1QD 801 E 1 
HETATM 41 O O32 1QD . . . N 2 154.569 152.159 122.352 1 40.59 ? O32 1QD 801 E 1 
HETATM 42 O O33 1QD . . . N 2 156.946 148.245 121.412 1 40.59 ? O33 1QD 801 E 1 
HETATM 43 O O34 1QD . . . N 2 159.41 148.782 123.045 1 40.59 ? O34 1QD 801 E 1 
HETATM 44 O O35 1QD . . . N 2 160.342 147.996 120.754 1 40.59 ? O35 1QD 801 E 1 
HETATM 45 P P07 1QD . . . N 2 154.239 150.83 121.786 1 40.59 ? P07 1QD 801 E 1 
HETATM 46 P P09 1QD . . . N 2 152.479 152.202 120.058 1 40.59 ? P09 1QD 801 E 1 
HETATM 47 H H131 1QD . . . N 2 152.995 153.694 116.724 1 40.59 ? H131 1QD 801 E 1 
HETATM 48 H H151 1QD . . . N 2 151.229 153.236 113.326 1 40.59 ? H151 1QD 801 E 1 
HETATM 49 H H161 1QD . . . N 2 154.111 153.222 113.619 1 40.59 ? H161 1QD 801 E 1 
HETATM 50 H H011 1QD . . . N 2 158.212 146.826 120.675 1 40.59 ? H011 1QD 801 E 1 
HETATM 51 H H021 1QD . . . N 2 159.217 149.527 119.731 1 40.59 ? H021 1QD 801 E 1 
HETATM 52 H H031 1QD . . . N 2 159.306 150.652 121.899 1 40.59 ? H031 1QD 801 E 1 
HETATM 53 H H041 1QD . . . N 2 157.016 149.538 123.038 1 40.59 ? H041 1QD 801 E 1 
HETATM 54 H H141 1QD . . . N 2 150.643 152.029 115.385 1 40.59 ? H141 1QD 801 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#