data_7NAK
#
_model_server_result.job_id            Wc-kSQRHX5QRpYqKAE1jBA 
_model_server_result.datetime_utc      '2024-11-17 23:38:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":801}' 
#
_entry.id    7NAK 
#
_exptl.entry_id    7NAK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              797.364 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NAK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C24 H28 I N6 O13 P2 1' 
_chem_comp.formula_weight    797.364 
_chem_comp.id                1QD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O34 C03 1QD sing 1 n n 
C03 C04 1QD sing 2 n n 
C03 C02 1QD sing 3 n n 
C04 C05 1QD sing 4 n n 
C04 O33 1QD sing 5 n n 
O32 P07 1QD doub 6 n n 
C05 O06 1QD sing 7 n n 
O35 C02 1QD sing 8 n n 
O33 C01 1QD sing 9 n n 
O06 P07 1QD sing 10 n n 
O31 P07 1QD sing 11 n n 
C02 C01 1QD sing 12 n n 
P07 O08 1QD sing 13 n n 
C01 N36 1QD sing 14 n n 
O08 P09 1QD sing 15 n n 
N36 C37 1QD doub 16 n y 
N36 C41 1QD sing 17 n y 
C37 C38 1QD sing 18 n y 
O30 P09 1QD doub 19 n n 
P09 O10 1QD sing 20 n n 
P09 O11 1QD sing 21 n n 
C41 C40 1QD doub 22 n y 
C38 C45 1QD sing 23 n y 
C38 C39 1QD doub 24 n y 
O11 C12 1QD sing 25 n n 
C40 C39 1QD sing 26 n y 
C45 C44 1QD doub 27 n y 
C39 C42 1QD sing 28 n y 
C12 C13 1QD sing 29 n n 
C44 C43 1QD sing 30 n y 
C13 O17 1QD sing 31 n n 
C13 C14 1QD sing 32 n n 
C42 C43 1QD doub 33 n y 
C42 I46 1QD sing 34 n n 
O29 C14 1QD sing 35 n n 
O17 C16 1QD sing 36 n n 
C14 C15 1QD sing 37 n n 
C16 C15 1QD sing 38 n n 
C16 N18 1QD sing 39 n n 
C15 O28 1QD sing 40 n n 
N18 C19 1QD sing 41 n y 
N18 C22 1QD sing 42 n y 
C19 N20 1QD doub 43 n y 
C22 N23 1QD doub 44 n y 
C22 C21 1QD sing 45 n y 
N23 C24 1QD sing 46 n y 
N20 C21 1QD sing 47 n y 
C21 C26 1QD doub 48 n y 
C24 N25 1QD doub 49 n y 
C26 N25 1QD sing 50 n y 
C26 N27 1QD sing 51 n n 
O10 H1 1QD sing 52 n n 
C13 H131 1QD sing 53 n n 
C15 H151 1QD sing 54 n n 
C16 H161 1QD sing 55 n n 
C19 H2 1QD sing 56 n n 
C01 H011 1QD sing 57 n n 
C02 H021 1QD sing 58 n n 
C03 H031 1QD sing 59 n n 
C04 H041 1QD sing 60 n n 
C05 H3 1QD sing 61 n n 
C05 H4 1QD sing 62 n n 
C12 H5 1QD sing 63 n n 
C12 H6 1QD sing 64 n n 
C14 H141 1QD sing 65 n n 
C24 H7 1QD sing 66 n n 
C37 H8 1QD sing 67 n n 
C40 H9 1QD sing 68 n n 
C41 H10 1QD sing 69 n n 
C43 H11 1QD sing 70 n n 
C44 H12 1QD sing 71 n n 
C45 H13 1QD sing 72 n n 
N27 H14 1QD sing 73 n n 
N27 H15 1QD sing 74 n n 
O28 H16 1QD sing 75 n n 
O29 H17 1QD sing 76 n n 
O31 H18 1QD sing 77 n n 
O34 H19 1QD sing 78 n n 
O35 H20 1QD sing 79 n n 
#
_atom_sites.entry_id                     7NAK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 1QD D 1 801 801 1QD 1AD . 
J 2 1QD C 1 801 801 1QD 1AD . 
K 2 1QD G 1 801 801 1QD 1AD . 
L 2 1QD B 1 801 801 1QD 1AD . 
M 2 1QD A 1 801 801 1QD 1AD . 
N 2 1QD E 1 801 801 1QD 1AD . 
O 2 1QD F 1 801 801 1QD 1AD . 
P 2 1QD H 1 801 801 1QD 1AD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 1QD . . . P 2 146.714 177.707 231.157 1 67.36 ? O10 1QD 801 H 1 
HETATM 2 C C13 1QD . . . P 2 146.499 179.249 235.155 1 67.36 ? C13 1QD 801 H 1 
HETATM 3 C C15 1QD . . . P 2 144.98 179.195 236.944 1 67.36 ? C15 1QD 801 H 1 
HETATM 4 C C16 1QD . . . P 2 146.42 179.193 237.475 1 67.36 ? C16 1QD 801 H 1 
HETATM 5 C C19 1QD . . . P 2 146.236 181.586 238.194 1 67.36 ? C19 1QD 801 H 1 
HETATM 6 C C01 1QD . . . P 2 153.587 179.54 232.557 1 67.36 ? C01 1QD 801 H 1 
HETATM 7 C C02 1QD . . . P 2 154.129 178.104 232.582 1 67.36 ? C02 1QD 801 H 1 
HETATM 8 C C03 1QD . . . P 2 153.495 177.425 231.366 1 67.36 ? C03 1QD 801 H 1 
HETATM 9 C C04 1QD . . . P 2 152.751 178.54 230.64 1 67.36 ? C04 1QD 801 H 1 
HETATM 10 C C05 1QD . . . P 2 151.392 178.056 230.201 1 67.36 ? C05 1QD 801 H 1 
HETATM 11 C C12 1QD . . . P 2 147.123 180.079 234.059 1 67.36 ? C12 1QD 801 H 1 
HETATM 12 C C14 1QD . . . P 2 145.148 179.819 235.559 1 67.36 ? C14 1QD 801 H 1 
HETATM 13 C C21 1QD . . . P 2 147.268 181.487 240.128 1 67.36 ? C21 1QD 801 H 1 
HETATM 14 C C22 1QD . . . P 2 147.278 180.24 239.591 1 67.36 ? C22 1QD 801 H 1 
HETATM 15 C C24 1QD . . . P 2 148.45 179.41 241.462 1 67.36 ? C24 1QD 801 H 1 
HETATM 16 C C26 1QD . . . P 2 147.898 181.672 241.416 1 67.36 ? C26 1QD 801 H 1 
HETATM 17 C C37 1QD . . . P 2 151.75 180.493 233.958 1 67.36 ? C37 1QD 801 H 1 
HETATM 18 C C38 1QD . . . P 2 151.108 180.827 235.197 1 67.36 ? C38 1QD 801 H 1 
HETATM 19 C C39 1QD . . . P 2 151.738 180.507 236.381 1 67.36 ? C39 1QD 801 H 1 
HETATM 20 C C40 1QD . . . P 2 153.007 179.853 236.331 1 67.36 ? C40 1QD 801 H 1 
HETATM 21 C C41 1QD . . . P 2 153.573 179.559 235.082 1 67.36 ? C41 1QD 801 H 1 
HETATM 22 C C42 1QD . . . P 2 151.115 180.831 237.632 1 67.36 ? C42 1QD 801 H 1 
HETATM 23 C C43 1QD . . . P 2 149.872 181.471 237.647 1 67.36 ? C43 1QD 801 H 1 
HETATM 24 C C44 1QD . . . P 2 149.233 181.796 236.443 1 67.36 ? C44 1QD 801 H 1 
HETATM 25 C C45 1QD . . . P 2 149.837 181.481 235.217 1 67.36 ? C45 1QD 801 H 1 
HETATM 26 I I46 1QD . . . P 2 152.061 180.347 239.45 1 67.36 ? I46 1QD 801 H 1 
HETATM 27 N N18 1QD . . . P 2 146.634 180.31 238.391 1 67.36 ? N18 1QD 801 H 1 
HETATM 28 N N20 1QD . . . P 2 146.61 182.311 239.235 1 67.36 ? N20 1QD 801 H 1 
HETATM 29 N N23 1QD . . . P 2 147.884 179.19 240.28 1 67.36 ? N23 1QD 801 H 1 
HETATM 30 N N25 1QD . . . P 2 148.466 180.617 242.033 1 67.36 ? N25 1QD 801 H 1 
HETATM 31 N N27 1QD . . . P 2 147.917 182.99 242.041 1 67.36 ? N27 1QD 801 H 1 
HETATM 32 N N36 1QD . . . P 2 152.93 179.888 233.952 1 67.36 ? N36 1QD 801 H 1 
HETATM 33 O O06 1QD . . . P 2 150.443 179.118 230.434 1 67.36 ? O06 1QD 801 H 1 
HETATM 34 O O08 1QD . . . P 2 147.938 179.853 230.505 1 67.36 ? O08 1QD 801 H 1 
HETATM 35 O O11 1QD . . . P 2 147.674 179.19 233.062 1 67.36 ? O11 1QD 801 H 1 
HETATM 36 O O17 1QD . . . P 2 147.297 179.306 236.36 1 67.36 ? O17 1QD 801 H 1 
HETATM 37 O O28 1QD . . . P 2 144.488 177.863 236.835 1 67.36 ? O28 1QD 801 H 1 
HETATM 38 O O29 1QD . . . P 2 144.119 179.383 234.677 1 67.36 ? O29 1QD 801 H 1 
HETATM 39 O O30 1QD . . . P 2 145.694 179.88 231.613 1 67.36 ? O30 1QD 801 H 1 
HETATM 40 O O31 1QD . . . P 2 149.223 179.832 228.351 1 67.36 ? O31 1QD 801 H 1 
HETATM 41 O O32 1QD . . . P 2 148.66 177.716 229.346 1 67.36 ? O32 1QD 801 H 1 
HETATM 42 O O33 1QD . . . P 2 152.586 179.624 231.575 1 67.36 ? O33 1QD 801 H 1 
HETATM 43 O O34 1QD . . . P 2 154.516 176.891 230.531 1 67.36 ? O34 1QD 801 H 1 
HETATM 44 O O35 1QD . . . P 2 155.547 178.103 232.453 1 67.36 ? O35 1QD 801 H 1 
HETATM 45 P P07 1QD . . . P 2 149.061 179.112 229.633 1 67.36 ? P07 1QD 801 H 1 
HETATM 46 P P09 1QD . . . P 2 146.978 179.153 231.567 1 67.36 ? P09 1QD 801 H 1 
HETATM 47 H H131 1QD . . . P 2 146.384 178.203 234.828 1 67.36 ? H131 1QD 801 H 1 
HETATM 48 H H151 1QD . . . P 2 144.31 179.823 237.592 1 67.36 ? H151 1QD 801 H 1 
HETATM 49 H H161 1QD . . . P 2 146.638 178.136 238.055 1 67.36 ? H161 1QD 801 H 1 
HETATM 50 H H011 1QD . . . P 2 154.383 180.228 232.333 1 67.36 ? H011 1QD 801 H 1 
HETATM 51 H H021 1QD . . . P 2 153.797 177.549 233.579 1 67.36 ? H021 1QD 801 H 1 
HETATM 52 H H031 1QD . . . P 2 152.711 176.545 231.722 1 67.36 ? H031 1QD 801 H 1 
HETATM 53 H H041 1QD . . . P 2 153.332 178.877 229.777 1 67.36 ? H041 1QD 801 H 1 
HETATM 54 H H141 1QD . . . P 2 145.187 181.043 235.632 1 67.36 ? H141 1QD 801 H 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           54 
#