data_7NB4 # _model_server_result.job_id OVn1P3oS7upVhijffcjmtA _model_server_result.datetime_utc '2024-11-26 14:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7NB4 # _exptl.entry_id 7NB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.968 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[[5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NB4 _cell.length_a 39.739 _cell.length_b 39.739 _cell.length_c 328.268 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 402 1_555 D O3 PG6 . A PG6 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc2 C MG MG . A MG 402 1_555 D O3 PG6 . A PG6 403 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? # _chem_comp.formula 'C24 H22 Cl N3 O2 S' _chem_comp.formula_weight 451.968 _chem_comp.id U6Q _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[[5-(3-chloranyl-2-methyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]amino]-3-phenyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 U6Q doub 401 n y N1 C7 U6Q sing 402 n y S1 C6 U6Q sing 403 n y S1 C3 U6Q sing 404 n y C1 C2 U6Q sing 405 n n C6 C5 U6Q sing 406 n y C7 N2 U6Q doub 407 n y C3 C2 U6Q sing 408 n n C3 C4 U6Q doub 409 n y N2 C8 U6Q sing 410 n y C5 C4 U6Q sing 411 n y C5 C8 U6Q doub 412 n y C4 C18 U6Q sing 413 n n C8 N3 U6Q sing 414 n n O1 C17 U6Q doub 415 n n C18 C24 U6Q doub 416 n y C18 C19 U6Q sing 417 n y C17 O2 U6Q sing 418 n n C17 C9 U6Q sing 419 n n N3 C9 U6Q sing 420 n n C24 C23 U6Q sing 421 n y C20 C19 U6Q sing 422 n n C9 C10 U6Q sing 423 n n C19 C21 U6Q doub 424 n y C23 C22 U6Q doub 425 n y C21 C22 U6Q sing 426 n y C21 CL1 U6Q sing 427 n n C10 C11 U6Q sing 428 n n C11 C12 U6Q doub 429 n y C11 C16 U6Q sing 430 n y C12 C13 U6Q sing 431 n y C16 C15 U6Q doub 432 n y C13 C14 U6Q doub 433 n y C15 C14 U6Q sing 434 n y C1 H1 U6Q sing 435 n n C1 H2 U6Q sing 436 n n C1 H3 U6Q sing 437 n n C2 H4 U6Q sing 438 n n C2 H5 U6Q sing 439 n n C7 H6 U6Q sing 440 n n N3 H7 U6Q sing 441 n n C9 H8 U6Q sing 442 n n C10 H9 U6Q sing 443 n n C10 H10 U6Q sing 444 n n C12 H11 U6Q sing 445 n n C13 H12 U6Q sing 446 n n C14 H13 U6Q sing 447 n n C15 H14 U6Q sing 448 n n C16 H15 U6Q sing 449 n n O2 H16 U6Q sing 450 n n C20 H17 U6Q sing 451 n n C20 H18 U6Q sing 452 n n C20 H19 U6Q sing 453 n n C22 H20 U6Q sing 454 n n C23 H21 U6Q sing 455 n n C24 H22 U6Q sing 456 n n # _atom_sites.entry_id 7NB4 _atom_sites.fract_transf_matrix[1][1] 0.025164 _atom_sites.fract_transf_matrix[1][2] 0.014529 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U6Q A 1 401 401 U6Q UNL . C 3 MG A 1 402 1 MG MG . D 4 PG6 A 1 403 2 PG6 12P . E 5 HOH A 1 501 52 HOH HOH . E 5 HOH A 2 502 23 HOH HOH . E 5 HOH A 3 503 4 HOH HOH . E 5 HOH A 4 504 51 HOH HOH . E 5 HOH A 5 505 60 HOH HOH . E 5 HOH A 6 506 64 HOH HOH . E 5 HOH A 7 507 26 HOH HOH . E 5 HOH A 8 508 56 HOH HOH . E 5 HOH A 9 509 24 HOH HOH . E 5 HOH A 10 510 19 HOH HOH . E 5 HOH A 11 511 46 HOH HOH . E 5 HOH A 12 512 30 HOH HOH . E 5 HOH A 13 513 6 HOH HOH . E 5 HOH A 14 514 55 HOH HOH . E 5 HOH A 15 515 11 HOH HOH . E 5 HOH A 16 516 31 HOH HOH . E 5 HOH A 17 517 41 HOH HOH . E 5 HOH A 18 518 22 HOH HOH . E 5 HOH A 19 519 15 HOH HOH . E 5 HOH A 20 520 39 HOH HOH . E 5 HOH A 21 521 54 HOH HOH . E 5 HOH A 22 522 13 HOH HOH . E 5 HOH A 23 523 25 HOH HOH . E 5 HOH A 24 524 8 HOH HOH . E 5 HOH A 25 525 49 HOH HOH . E 5 HOH A 26 526 29 HOH HOH . E 5 HOH A 27 527 36 HOH HOH . E 5 HOH A 28 528 59 HOH HOH . E 5 HOH A 29 529 27 HOH HOH . E 5 HOH A 30 530 9 HOH HOH . E 5 HOH A 31 531 5 HOH HOH . E 5 HOH A 32 532 1 HOH HOH . E 5 HOH A 33 533 58 HOH HOH . E 5 HOH A 34 534 38 HOH HOH . E 5 HOH A 35 535 50 HOH HOH . E 5 HOH A 36 536 16 HOH HOH . E 5 HOH A 37 537 35 HOH HOH . E 5 HOH A 38 538 28 HOH HOH . E 5 HOH A 39 539 45 HOH HOH . E 5 HOH A 40 540 20 HOH HOH . E 5 HOH A 41 541 17 HOH HOH . E 5 HOH A 42 542 43 HOH HOH . E 5 HOH A 43 543 34 HOH HOH . E 5 HOH A 44 544 10 HOH HOH . E 5 HOH A 45 545 21 HOH HOH . E 5 HOH A 46 546 37 HOH HOH . E 5 HOH A 47 547 18 HOH HOH . E 5 HOH A 48 548 14 HOH HOH . E 5 HOH A 49 549 2 HOH HOH . E 5 HOH A 50 550 57 HOH HOH . E 5 HOH A 51 551 3 HOH HOH . E 5 HOH A 52 552 7 HOH HOH . E 5 HOH A 53 553 12 HOH HOH . E 5 HOH A 54 554 48 HOH HOH . E 5 HOH A 55 555 33 HOH HOH . E 5 HOH A 56 556 53 HOH HOH . E 5 HOH A 57 557 65 HOH HOH . E 5 HOH A 58 558 44 HOH HOH . E 5 HOH A 59 559 47 HOH HOH . E 5 HOH A 60 560 62 HOH HOH . E 5 HOH A 61 561 63 HOH HOH . E 5 HOH A 62 562 40 HOH HOH . E 5 HOH A 63 563 32 HOH HOH . E 5 HOH A 64 564 42 HOH HOH . E 5 HOH A 65 565 66 HOH HOH . E 5 HOH A 66 566 61 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U6Q . . . B 2 8.375 3.933 -7.966 1 45.45 ? C1 U6Q 401 A 1 HETATM 2 C C2 U6Q . . . B 2 7.282 4.142 -7.028 1 42.38 ? C2 U6Q 401 A 1 HETATM 3 C C3 U6Q . . . B 2 6.2 3.116 -7.127 1 36.94 ? C3 U6Q 401 A 1 HETATM 4 C C4 U6Q . . . B 2 5.709 2.308 -6.157 1 33.58 ? C4 U6Q 401 A 1 HETATM 5 C C5 U6Q . . . B 2 4.568 1.485 -6.621 1 34.55 ? C5 U6Q 401 A 1 HETATM 6 C C6 U6Q . . . B 2 4.293 1.76 -7.943 1 33.47 ? C6 U6Q 401 A 1 HETATM 7 S S1 U6Q . . . B 2 5.354 2.943 -8.614 1 37.77 ? S1 U6Q 401 A 1 HETATM 8 N N1 U6Q . . . B 2 3.305 1.156 -8.616 1 35.32 ? N1 U6Q 401 A 1 HETATM 9 C C7 U6Q . . . B 2 2.595 0.25 -7.942 1 37.39 ? C7 U6Q 401 A 1 HETATM 10 N N2 U6Q . . . B 2 2.774 -0.091 -6.653 1 33.91 ? N2 U6Q 401 A 1 HETATM 11 C C8 U6Q . . . B 2 3.762 0.51 -5.952 1 31.12 ? C8 U6Q 401 A 1 HETATM 12 N N3 U6Q . . . B 2 3.953 0.174 -4.684 1 34.64 ? N3 U6Q 401 A 1 HETATM 13 C C9 U6Q . . . B 2 3.146 -0.871 -4.077 1 32.64 ? C9 U6Q 401 A 1 HETATM 14 C C10 U6Q . . . B 2 3.465 -0.941 -2.574 1 33.9 ? C10 U6Q 401 A 1 HETATM 15 C C11 U6Q . . . B 2 2.964 0.291 -1.849 1 34.64 ? C11 U6Q 401 A 1 HETATM 16 C C12 U6Q . . . B 2 1.604 0.53 -1.748 1 33.85 ? C12 U6Q 401 A 1 HETATM 17 C C13 U6Q . . . B 2 1.126 1.692 -1.15 1 35.99 ? C13 U6Q 401 A 1 HETATM 18 C C14 U6Q . . . B 2 2.016 2.623 -0.668 1 36.58 ? C14 U6Q 401 A 1 HETATM 19 C C15 U6Q . . . B 2 3.376 2.409 -0.769 1 35.9 ? C15 U6Q 401 A 1 HETATM 20 C C16 U6Q . . . B 2 3.851 1.24 -1.363 1 37.73 ? C16 U6Q 401 A 1 HETATM 21 C C17 U6Q . . . B 2 3.446 -2.246 -4.735 1 36.48 ? C17 U6Q 401 A 1 HETATM 22 O O1 U6Q . . . B 2 4.57 -2.389 -5.29 1 37.21 -1 O1 U6Q 401 A 1 HETATM 23 O O2 U6Q . . . B 2 2.567 -3.144 -4.618 1 35.63 ? O2 U6Q 401 A 1 HETATM 24 C C18 U6Q . . . B 2 6.309 2.28 -4.808 1 36.92 ? C18 U6Q 401 A 1 HETATM 25 C C19 U6Q . . . B 2 6.074 3.325 -3.908 1 37.33 ? C19 U6Q 401 A 1 HETATM 26 C C20 U6Q . . . B 2 5.186 4.492 -4.26 1 37.84 ? C20 U6Q 401 A 1 HETATM 27 C C21 U6Q . . . B 2 6.691 3.276 -2.669 1 37.84 ? C21 U6Q 401 A 1 HETATM 28 CL CL1 U6Q . . . B 2 6.417 4.585 -1.54 1 44.01 ? CL1 U6Q 401 A 1 HETATM 29 C C22 U6Q . . . B 2 7.475 2.204 -2.276 1 41.84 ? C22 U6Q 401 A 1 HETATM 30 C C23 U6Q . . . B 2 7.703 1.18 -3.164 1 42.91 ? C23 U6Q 401 A 1 HETATM 31 C C24 U6Q . . . B 2 7.122 1.212 -4.421 1 36.34 ? C24 U6Q 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 503 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #