data_7NBA
#
_model_server_result.job_id            PeuWJ2KvQaTNuRIyRzVSLg 
_model_server_result.datetime_utc      '2025-07-17 11:32:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nba 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":600}' 
#
_entry.id    7NBA 
#
_exptl.entry_id    7NBA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc2 A OE2 GLU 71 A GLU 71 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 D O1G GTP . A GTP 500 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc4 D O1B GTP . A GTP 500 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc5 B OE1 GLN 11 B GLN 11 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc6 B OE1 GLU 69 B GLU 69 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc7 B OE2 GLU 69 B GLU 69 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc8 F O2G G2P . B G2P 600 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc9 F O2B G2P . B G2P 600 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc10 C OG1 THR 113 K THR 113 1_555 I MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc11 C O LYS 264 K LYS 264 1_555 I MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc12 C OG SER 266 K SER 266 1_555 I MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc13 H O3G ANP . K ANP 700 1_555 I MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc14 H O2B ANP . K ANP 700 1_555 I MG MG . K MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                G2P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G G2P sing 133 n n 
PG O2G G2P doub 134 n n 
PG O3G G2P sing 135 n n 
PG O3B G2P sing 136 n n 
O3B PB G2P sing 137 n n 
PB O1B G2P sing 138 n n 
PB O2B G2P doub 139 n n 
PB C3A G2P sing 140 n n 
C3A PA G2P sing 141 n n 
C3A H3A1 G2P sing 142 n n 
C3A H3A2 G2P sing 143 n n 
PA O1A G2P sing 144 n n 
PA O2A G2P doub 145 n n 
PA O5' G2P sing 146 n n 
O5' C5' G2P sing 147 n n 
C5' C4' G2P sing 148 n n 
C5' "H5'1" G2P sing 149 n n 
C5' "H5'2" G2P sing 150 n n 
C4' O4' G2P sing 151 n n 
C4' C3' G2P sing 152 n n 
C4' H4' G2P sing 153 n n 
O4' C1' G2P sing 154 n n 
C3' O3' G2P sing 155 n n 
C3' C2' G2P sing 156 n n 
C3' H3' G2P sing 157 n n 
O3' HA G2P sing 158 n n 
C2' O2' G2P sing 159 n n 
C2' C1' G2P sing 160 n n 
C2' H2' G2P sing 161 n n 
O2' HB G2P sing 162 n n 
C1' N9 G2P sing 163 n n 
C1' H1' G2P sing 164 n n 
N9 C8 G2P sing 165 n y 
N9 C4 G2P sing 166 n y 
C8 N7 G2P doub 167 n y 
C8 H8 G2P sing 168 n n 
N7 C5 G2P sing 169 n y 
C5 C6 G2P sing 170 n y 
C5 C4 G2P doub 171 n y 
C6 O6 G2P doub 172 n n 
C6 N1 G2P sing 173 n y 
N1 C2 G2P sing 174 n y 
N1 H1 G2P sing 175 n n 
C2 N2 G2P sing 176 n n 
C2 N3 G2P doub 177 n y 
N2 H2N1 G2P sing 178 n n 
N2 H2N2 G2P sing 179 n n 
N3 C4 G2P sing 180 n y 
HO1 O1G G2P sing 181 n n 
HO2 O3G G2P sing 182 n n 
HO3 O1A G2P sing 183 n n 
HO4 O1B G2P sing 184 n n 
#
_atom_sites.entry_id                     7NBA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 500 500 GTP GTP . 
E 5 MG A 1 501 501 MG MG . 
F 6 G2P B 1 600 600 G2P G2P . 
G 5 MG B 1 601 601 MG MG . 
H 7 ANP K 1 700 700 ANP ANP . 
I 5 MG K 1 701 701 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG G2P . . . F 6 207.08 225.232 265.141 1 20 ? PG G2P 600 B 1 
HETATM 2 O O1G G2P . . . F 6 208.016 224.102 264.782 1 20 ? O1G G2P 600 B 1 
HETATM 3 O O2G G2P . . . F 6 207.595 226.59 264.721 1 20 ? O2G G2P 600 B 1 
HETATM 4 O O3G G2P . . . F 6 205.635 224.992 264.778 1 20 ? O3G G2P 600 B 1 
HETATM 5 O O3B G2P . . . F 6 207.042 225.197 266.752 1 20 ? O3B G2P 600 B 1 
HETATM 6 P PB G2P . . . F 6 207.318 226.503 267.648 1 20 ? PB G2P 600 B 1 
HETATM 7 O O1B G2P . . . F 6 207.253 226.135 269.076 1 20 ? O1B G2P 600 B 1 
HETATM 8 O O2B G2P . . . F 6 208.674 227.134 267.051 1 20 ? O2B G2P 600 B 1 
HETATM 9 C C3A G2P . . . F 6 205.996 227.675 267.287 1 20 ? C3A G2P 600 B 1 
HETATM 10 P PA G2P . . . F 6 206.364 229.353 267.858 1 20 ? PA G2P 600 B 1 
HETATM 11 O O1A G2P . . . F 6 206.924 229.131 269.21 1 20 ? O1A G2P 600 B 1 
HETATM 12 O O2A G2P . . . F 6 207.469 230.195 267.041 1 20 ? O2A G2P 600 B 1 
HETATM 13 O O5' G2P . . . F 6 204.969 230.055 268.247 1 20 ? O5' G2P 600 B 1 
HETATM 14 C C5' G2P . . . F 6 204.337 231.185 267.643 1 20 ? C5' G2P 600 B 1 
HETATM 15 C C4' G2P . . . F 6 203.339 231.603 268.718 1 20 ? C4' G2P 600 B 1 
HETATM 16 O O4' G2P . . . F 6 204.013 232.068 269.898 1 20 ? O4' G2P 600 B 1 
HETATM 17 C C3' G2P . . . F 6 202.569 232.881 268.463 1 20 ? C3' G2P 600 B 1 
HETATM 18 O O3' G2P . . . F 6 201.391 233.035 269.276 1 20 ? O3' G2P 600 B 1 
HETATM 19 C C2' G2P . . . F 6 203.651 233.944 268.556 1 20 ? C2' G2P 600 B 1 
HETATM 20 O O2' G2P . . . F 6 202.876 235.132 268.396 1 20 ? O2' G2P 600 B 1 
HETATM 21 C C1' G2P . . . F 6 204.124 233.52 269.943 1 20 ? C1' G2P 600 B 1 
HETATM 22 N N9 G2P . . . F 6 205.521 233.979 270.15 1 20 ? N9 G2P 600 B 1 
HETATM 23 C C8 G2P . . . F 6 206.593 233.799 269.353 1 20 ? C8 G2P 600 B 1 
HETATM 24 N N7 G2P . . . F 6 207.695 234.374 269.9 1 20 ? N7 G2P 600 B 1 
HETATM 25 C C5 G2P . . . F 6 207.341 234.938 271.066 1 20 ? C5 G2P 600 B 1 
HETATM 26 C C6 G2P . . . F 6 208.011 235.709 272.146 1 20 ? C6 G2P 600 B 1 
HETATM 27 O O6 G2P . . . F 6 209.225 235.986 272.094 1 20 ? O6 G2P 600 B 1 
HETATM 28 N N1 G2P . . . F 6 207.257 236.121 273.175 1 20 ? N1 G2P 600 B 1 
HETATM 29 C C2 G2P . . . F 6 205.934 235.845 273.267 1 20 ? C2 G2P 600 B 1 
HETATM 30 N N2 G2P . . . F 6 205.239 236.292 274.346 1 20 ? N2 G2P 600 B 1 
HETATM 31 N N3 G2P . . . F 6 205.265 235.144 272.314 1 20 ? N3 G2P 600 B 1 
HETATM 32 C C4 G2P . . . F 6 205.903 234.679 271.213 1 20 ? C4 G2P 600 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#