data_7NBI # _model_server_result.job_id PWog4UM3hpEbSXQevrFPig _model_server_result.datetime_utc '2024-10-15 13:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7NBI # _exptl.entry_id 7NBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.82 _cell.angle_beta 85.41 _cell.angle_gamma 85.1 _cell.entry_id 7NBI _cell.length_a 28.3 _cell.length_b 43.49 _cell.length_c 46.36 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 4 1_555 A SG CYS 89 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 48 A CYS 44 1_555 A SG CYS 131 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 97 A CYS 93 1_555 A SG CYS 136 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf4 B SG CYS 8 B CYS 4 1_555 B SG CYS 89 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 48 B CYS 44 1_555 B SG CYS 131 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 97 B CYS 93 1_555 B SG CYS 136 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 7NBI _atom_sites.fract_transf_matrix[1][1] 0.035336 _atom_sites.fract_transf_matrix[1][2] -0.003029 _atom_sites.fract_transf_matrix[1][3] -0.002494 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023078 _atom_sites.fract_transf_matrix[2][3] -0.002765 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 201 2 SO4 SO4 . D 2 SO4 A 1 202 4 SO4 SO4 . E 2 SO4 A 1 203 7 SO4 SO4 . F 2 SO4 A 1 204 8 SO4 SO4 . G 2 SO4 A 1 205 9 SO4 SO4 . H 3 HOH A 1 301 208 HOH HOH . H 3 HOH A 2 302 171 HOH HOH . H 3 HOH A 3 303 214 HOH HOH . H 3 HOH A 4 304 206 HOH HOH . H 3 HOH A 5 305 203 HOH HOH . H 3 HOH A 6 306 74 HOH HOH . H 3 HOH A 7 307 148 HOH HOH . H 3 HOH A 8 308 91 HOH HOH . H 3 HOH A 9 309 110 HOH HOH . H 3 HOH A 10 310 169 HOH HOH . H 3 HOH A 11 311 194 HOH HOH . H 3 HOH A 12 312 103 HOH HOH . H 3 HOH A 13 313 109 HOH HOH . H 3 HOH A 14 314 77 HOH HOH . H 3 HOH A 15 315 44 HOH HOH . H 3 HOH A 16 316 65 HOH HOH . H 3 HOH A 17 317 25 HOH HOH . H 3 HOH A 18 318 71 HOH HOH . H 3 HOH A 19 319 57 HOH HOH . H 3 HOH A 20 320 28 HOH HOH . H 3 HOH A 21 321 122 HOH HOH . H 3 HOH A 22 322 159 HOH HOH . H 3 HOH A 23 323 19 HOH HOH . H 3 HOH A 24 324 161 HOH HOH . H 3 HOH A 25 325 24 HOH HOH . H 3 HOH A 26 326 6 HOH HOH . H 3 HOH A 27 327 106 HOH HOH . H 3 HOH A 28 328 45 HOH HOH . H 3 HOH A 29 329 126 HOH HOH . H 3 HOH A 30 330 61 HOH HOH . H 3 HOH A 31 331 5 HOH HOH . H 3 HOH A 32 332 216 HOH HOH . H 3 HOH A 33 333 193 HOH HOH . H 3 HOH A 34 334 127 HOH HOH . H 3 HOH A 35 335 99 HOH HOH . H 3 HOH A 36 336 207 HOH HOH . H 3 HOH A 37 337 31 HOH HOH . H 3 HOH A 38 338 121 HOH HOH . H 3 HOH A 39 339 82 HOH HOH . H 3 HOH A 40 340 2 HOH HOH . H 3 HOH A 41 341 146 HOH HOH . H 3 HOH A 42 342 39 HOH HOH . H 3 HOH A 43 343 119 HOH HOH . H 3 HOH A 44 344 58 HOH HOH . H 3 HOH A 45 345 125 HOH HOH . H 3 HOH A 46 346 94 HOH HOH . H 3 HOH A 47 347 43 HOH HOH . H 3 HOH A 48 348 130 HOH HOH . H 3 HOH A 49 349 170 HOH HOH . H 3 HOH A 50 350 9 HOH HOH . H 3 HOH A 51 351 199 HOH HOH . H 3 HOH A 52 352 26 HOH HOH . H 3 HOH A 53 353 3 HOH HOH . H 3 HOH A 54 354 49 HOH HOH . H 3 HOH A 55 355 116 HOH HOH . H 3 HOH A 56 356 37 HOH HOH . H 3 HOH A 57 357 131 HOH HOH . H 3 HOH A 58 358 21 HOH HOH . H 3 HOH A 59 359 79 HOH HOH . H 3 HOH A 60 360 27 HOH HOH . H 3 HOH A 61 361 97 HOH HOH . H 3 HOH A 62 362 87 HOH HOH . H 3 HOH A 63 363 8 HOH HOH . H 3 HOH A 64 364 102 HOH HOH . H 3 HOH A 65 365 10 HOH HOH . H 3 HOH A 66 366 96 HOH HOH . H 3 HOH A 67 367 72 HOH HOH . H 3 HOH A 68 368 22 HOH HOH . H 3 HOH A 69 369 151 HOH HOH . H 3 HOH A 70 370 83 HOH HOH . H 3 HOH A 71 371 42 HOH HOH . H 3 HOH A 72 372 62 HOH HOH . H 3 HOH A 73 373 101 HOH HOH . H 3 HOH A 74 374 52 HOH HOH . H 3 HOH A 75 375 98 HOH HOH . H 3 HOH A 76 376 56 HOH HOH . H 3 HOH A 77 377 13 HOH HOH . H 3 HOH A 78 378 12 HOH HOH . H 3 HOH A 79 379 165 HOH HOH . H 3 HOH A 80 380 132 HOH HOH . H 3 HOH A 81 381 128 HOH HOH . H 3 HOH A 82 382 160 HOH HOH . H 3 HOH A 83 383 120 HOH HOH . H 3 HOH A 84 384 100 HOH HOH . H 3 HOH A 85 385 178 HOH HOH . H 3 HOH A 86 386 213 HOH HOH . H 3 HOH A 87 387 81 HOH HOH . H 3 HOH A 88 388 147 HOH HOH . H 3 HOH A 89 389 197 HOH HOH . H 3 HOH A 90 390 182 HOH HOH . H 3 HOH A 91 391 123 HOH HOH . H 3 HOH A 92 392 92 HOH HOH . H 3 HOH A 93 393 88 HOH HOH . H 3 HOH A 94 394 195 HOH HOH . H 3 HOH A 95 395 210 HOH HOH . H 3 HOH A 96 396 112 HOH HOH . H 3 HOH A 97 397 175 HOH HOH . H 3 HOH A 98 398 158 HOH HOH . H 3 HOH A 99 399 212 HOH HOH . H 3 HOH A 100 400 192 HOH HOH . H 3 HOH A 101 401 70 HOH HOH . H 3 HOH A 102 402 185 HOH HOH . H 3 HOH A 103 403 218 HOH HOH . H 3 HOH A 104 404 198 HOH HOH . H 3 HOH A 105 405 55 HOH HOH . H 3 HOH A 106 406 144 HOH HOH . H 3 HOH A 107 407 66 HOH HOH . H 3 HOH A 108 408 129 HOH HOH . I 3 HOH B 1 201 177 HOH HOH . I 3 HOH B 2 202 167 HOH HOH . I 3 HOH B 3 203 166 HOH HOH . I 3 HOH B 4 204 115 HOH HOH . I 3 HOH B 5 205 163 HOH HOH . I 3 HOH B 6 206 113 HOH HOH . I 3 HOH B 7 207 181 HOH HOH . I 3 HOH B 8 208 186 HOH HOH . I 3 HOH B 9 209 172 HOH HOH . I 3 HOH B 10 210 164 HOH HOH . I 3 HOH B 11 211 60 HOH HOH . I 3 HOH B 12 212 180 HOH HOH . I 3 HOH B 13 213 93 HOH HOH . I 3 HOH B 14 214 11 HOH HOH . I 3 HOH B 15 215 202 HOH HOH . I 3 HOH B 16 216 111 HOH HOH . I 3 HOH B 17 217 153 HOH HOH . I 3 HOH B 18 218 64 HOH HOH . I 3 HOH B 19 219 23 HOH HOH . I 3 HOH B 20 220 51 HOH HOH . I 3 HOH B 21 221 107 HOH HOH . I 3 HOH B 22 222 173 HOH HOH . I 3 HOH B 23 223 145 HOH HOH . I 3 HOH B 24 224 7 HOH HOH . I 3 HOH B 25 225 54 HOH HOH . I 3 HOH B 26 226 50 HOH HOH . I 3 HOH B 27 227 139 HOH HOH . I 3 HOH B 28 228 80 HOH HOH . I 3 HOH B 29 229 68 HOH HOH . I 3 HOH B 30 230 89 HOH HOH . I 3 HOH B 31 231 156 HOH HOH . I 3 HOH B 32 232 76 HOH HOH . I 3 HOH B 33 233 154 HOH HOH . I 3 HOH B 34 234 4 HOH HOH . I 3 HOH B 35 235 114 HOH HOH . I 3 HOH B 36 236 16 HOH HOH . I 3 HOH B 37 237 1 HOH HOH . I 3 HOH B 38 238 157 HOH HOH . I 3 HOH B 39 239 69 HOH HOH . I 3 HOH B 40 240 15 HOH HOH . I 3 HOH B 41 241 48 HOH HOH . I 3 HOH B 42 242 141 HOH HOH . I 3 HOH B 43 243 67 HOH HOH . I 3 HOH B 44 244 35 HOH HOH . I 3 HOH B 45 245 84 HOH HOH . I 3 HOH B 46 246 59 HOH HOH . I 3 HOH B 47 247 34 HOH HOH . I 3 HOH B 48 248 20 HOH HOH . I 3 HOH B 49 249 133 HOH HOH . I 3 HOH B 50 250 33 HOH HOH . I 3 HOH B 51 251 32 HOH HOH . I 3 HOH B 52 252 142 HOH HOH . I 3 HOH B 53 253 191 HOH HOH . I 3 HOH B 54 254 136 HOH HOH . I 3 HOH B 55 255 53 HOH HOH . I 3 HOH B 56 256 86 HOH HOH . I 3 HOH B 57 257 188 HOH HOH . I 3 HOH B 58 258 90 HOH HOH . I 3 HOH B 59 259 152 HOH HOH . I 3 HOH B 60 260 95 HOH HOH . I 3 HOH B 61 261 46 HOH HOH . I 3 HOH B 62 262 47 HOH HOH . I 3 HOH B 63 263 150 HOH HOH . I 3 HOH B 64 264 36 HOH HOH . I 3 HOH B 65 265 29 HOH HOH . I 3 HOH B 66 266 176 HOH HOH . I 3 HOH B 67 267 14 HOH HOH . I 3 HOH B 68 268 217 HOH HOH . I 3 HOH B 69 269 40 HOH HOH . I 3 HOH B 70 270 38 HOH HOH . I 3 HOH B 71 271 17 HOH HOH . I 3 HOH B 72 272 118 HOH HOH . I 3 HOH B 73 273 140 HOH HOH . I 3 HOH B 74 274 105 HOH HOH . I 3 HOH B 75 275 179 HOH HOH . I 3 HOH B 76 276 18 HOH HOH . I 3 HOH B 77 277 124 HOH HOH . I 3 HOH B 78 278 78 HOH HOH . I 3 HOH B 79 279 187 HOH HOH . I 3 HOH B 80 280 189 HOH HOH . I 3 HOH B 81 281 117 HOH HOH . I 3 HOH B 82 282 41 HOH HOH . I 3 HOH B 83 283 183 HOH HOH . I 3 HOH B 84 284 211 HOH HOH . I 3 HOH B 85 285 143 HOH HOH . I 3 HOH B 86 286 196 HOH HOH . I 3 HOH B 87 287 155 HOH HOH . I 3 HOH B 88 288 108 HOH HOH . I 3 HOH B 89 289 138 HOH HOH . I 3 HOH B 90 290 149 HOH HOH . I 3 HOH B 91 291 200 HOH HOH . I 3 HOH B 92 292 204 HOH HOH . I 3 HOH B 93 293 135 HOH HOH . I 3 HOH B 94 294 205 HOH HOH . I 3 HOH B 95 295 137 HOH HOH . I 3 HOH B 96 296 162 HOH HOH . I 3 HOH B 97 297 209 HOH HOH . I 3 HOH B 98 298 184 HOH HOH . I 3 HOH B 99 299 63 HOH HOH . I 3 HOH B 100 300 201 HOH HOH . I 3 HOH B 101 301 174 HOH HOH . I 3 HOH B 102 302 85 HOH HOH . I 3 HOH B 103 303 168 HOH HOH . I 3 HOH B 104 304 73 HOH HOH . I 3 HOH B 105 305 30 HOH HOH . I 3 HOH B 106 306 134 HOH HOH . I 3 HOH B 107 307 104 HOH HOH . I 3 HOH B 108 308 75 HOH HOH . I 3 HOH B 109 309 190 HOH HOH . I 3 HOH B 110 310 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 -1.334 63.071 75.922 1 58.35 ? S SO4 202 A 1 HETATM 2 O O1 SO4 . . . D 2 -1.931 62.86 74.639 1 49.09 ? O1 SO4 202 A 1 HETATM 3 O O2 SO4 . . . D 2 0.103 62.753 75.847 1 54.11 ? O2 SO4 202 A 1 HETATM 4 O O3 SO4 . . . D 2 -1.924 62.166 76.898 1 58.86 ? O3 SO4 202 A 1 HETATM 5 O O4 SO4 . . . D 2 -1.509 64.455 76.388 1 67.73 ? O4 SO4 202 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #