data_7NBR # _model_server_result.job_id --4nhv77nCj4td6-_vhVew _model_server_result.datetime_utc '2025-06-27 15:11:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7NBR # _exptl.entry_id 7NBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'boceprevir (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.833 _cell.angle_gamma 90 _cell.entry_id 7NBR _cell.length_a 113.767 _cell.length_b 53.37 _cell.length_c 45.949 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -9.422293 0 44.972558 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id U5G _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id U5G _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.849 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H47 N5 O5' _chem_comp.formula_weight 521.693 _chem_comp.id U5G _chem_comp.mon_nstd_flag . _chem_comp.name 'boceprevir (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 U5G doub 358 n n C06 C07 U5G sing 359 n n C06 C05 U5G sing 360 n n C08 C07 U5G sing 361 n n C08 C09 U5G sing 362 n n C02 C03 U5G sing 363 n n C02 N37 U5G sing 364 n n C03 C05 U5G sing 365 n n C03 O04 U5G sing 366 n n C07 C10 U5G sing 367 n n C05 N11 U5G sing 368 n n N11 C12 U5G sing 369 n n O35 C21 U5G doub 370 n n C09 C10 U5G sing 371 n n C32 C30 U5G sing 372 n n C12 C13 U5G sing 373 n n C12 O36 U5G doub 374 n n C13 N20 U5G sing 375 n n C13 C14 U5G sing 376 n n C25 C23 U5G sing 377 n n C21 N20 U5G sing 378 n n C21 C22 U5G sing 379 n n N29 C30 U5G sing 380 n n N29 C28 U5G sing 381 n n N27 C28 U5G sing 382 n n N27 C22 U5G sing 383 n n C31 C30 U5G sing 384 n n C17 C16 U5G sing 385 n n C30 C33 U5G sing 386 n n N20 C19 U5G sing 387 n n C14 C16 U5G sing 388 n n C14 C15 U5G sing 389 n n C28 O34 U5G doub 390 n n C22 C23 U5G sing 391 n n C16 C18 U5G sing 392 n n C16 C15 U5G sing 393 n n C23 C24 U5G sing 394 n n C23 C26 U5G sing 395 n n C19 C15 U5G sing 396 n n N29 H1 U5G sing 397 n n C31 H2 U5G sing 398 n n C31 H3 U5G sing 399 n n C31 H4 U5G sing 400 n n C32 H5 U5G sing 401 n n C32 H6 U5G sing 402 n n C32 H7 U5G sing 403 n n C33 H8 U5G sing 404 n n C33 H9 U5G sing 405 n n C33 H10 U5G sing 406 n n N27 H11 U5G sing 407 n n C22 H12 U5G sing 408 n n C24 H13 U5G sing 409 n n C24 H14 U5G sing 410 n n C24 H15 U5G sing 411 n n C25 H16 U5G sing 412 n n C25 H17 U5G sing 413 n n C25 H18 U5G sing 414 n n C26 H19 U5G sing 415 n n C26 H20 U5G sing 416 n n C26 H21 U5G sing 417 n n C19 H22 U5G sing 418 n n C19 H23 U5G sing 419 n n C13 H24 U5G sing 420 n n C14 H25 U5G sing 421 n n C15 H26 U5G sing 422 n n C17 H27 U5G sing 423 n n C17 H28 U5G sing 424 n n C17 H29 U5G sing 425 n n C18 H30 U5G sing 426 n n C18 H31 U5G sing 427 n n C18 H32 U5G sing 428 n n N11 H33 U5G sing 429 n n C05 H34 U5G sing 430 n n C06 H35 U5G sing 431 n n C06 H36 U5G sing 432 n n C07 H37 U5G sing 433 n n C10 H38 U5G sing 434 n n C10 H39 U5G sing 435 n n C08 H40 U5G sing 436 n n C08 H41 U5G sing 437 n n C09 H42 U5G sing 438 n n C09 H43 U5G sing 439 n n O04 H44 U5G sing 440 n n C03 H45 U5G sing 441 n n N37 H46 U5G sing 442 n n N37 H47 U5G sing 443 n n # _atom_sites.entry_id 7NBR _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U5G AAA 1 401 401 U5G Boc . C 3 CL AAA 1 402 501 CL CL . D 4 HOH AAA 1 501 16 HOH HOH . D 4 HOH AAA 2 502 25 HOH HOH . D 4 HOH AAA 3 503 18 HOH HOH . D 4 HOH AAA 4 504 24 HOH HOH . D 4 HOH AAA 5 505 19 HOH HOH . D 4 HOH AAA 6 506 4 HOH HOH . D 4 HOH AAA 7 507 7 HOH HOH . D 4 HOH AAA 8 508 2 HOH HOH . D 4 HOH AAA 9 509 22 HOH HOH . D 4 HOH AAA 10 510 15 HOH HOH . D 4 HOH AAA 11 511 3 HOH HOH . D 4 HOH AAA 12 512 12 HOH HOH . D 4 HOH AAA 13 513 63 HOH HOH . D 4 HOH AAA 14 514 11 HOH HOH . D 4 HOH AAA 15 515 45 HOH HOH . D 4 HOH AAA 16 516 66 HOH HOH . D 4 HOH AAA 17 517 61 HOH HOH . D 4 HOH AAA 18 518 1 HOH HOH . D 4 HOH AAA 19 519 49 HOH HOH . D 4 HOH AAA 20 520 55 HOH HOH . D 4 HOH AAA 21 521 9 HOH HOH . D 4 HOH AAA 22 522 58 HOH HOH . D 4 HOH AAA 23 523 52 HOH HOH . D 4 HOH AAA 24 524 13 HOH HOH . D 4 HOH AAA 25 525 6 HOH HOH . D 4 HOH AAA 26 526 40 HOH HOH . D 4 HOH AAA 27 527 43 HOH HOH . D 4 HOH AAA 28 528 62 HOH HOH . D 4 HOH AAA 29 529 41 HOH HOH . D 4 HOH AAA 30 530 38 HOH HOH . D 4 HOH AAA 31 531 57 HOH HOH . D 4 HOH AAA 32 532 60 HOH HOH . D 4 HOH AAA 33 533 21 HOH HOH . D 4 HOH AAA 34 534 35 HOH HOH . D 4 HOH AAA 35 535 48 HOH HOH . D 4 HOH AAA 36 536 34 HOH HOH . D 4 HOH AAA 37 537 65 HOH HOH . D 4 HOH AAA 38 538 42 HOH HOH . D 4 HOH AAA 39 539 44 HOH HOH . D 4 HOH AAA 40 540 67 HOH HOH . D 4 HOH AAA 41 541 10 HOH HOH . D 4 HOH AAA 42 542 17 HOH HOH . D 4 HOH AAA 43 543 39 HOH HOH . D 4 HOH AAA 44 544 37 HOH HOH . D 4 HOH AAA 45 545 64 HOH HOH . D 4 HOH AAA 46 546 59 HOH HOH . D 4 HOH AAA 47 547 56 HOH HOH . D 4 HOH AAA 48 548 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 U5G . . . B 2 -16.665 -21.448 -0.487 1 51.84 ? C28 U5G 401 AAA 1 HETATM 2 N N29 U5G . . . B 2 -17.201 -20.488 0.265 1 60.74 ? N29 U5G 401 AAA 1 HETATM 3 O O34 U5G . . . B 2 -17.026 -21.677 -1.62 1 48.04 ? O34 U5G 401 AAA 1 HETATM 4 C C30 U5G . . . B 2 -18.257 -19.545 -0.104 1 62.75 ? C30 U5G 401 AAA 1 HETATM 5 C C31 U5G . . . B 2 -19.285 -20.728 -0.029 1 59.61 ? C31 U5G 401 AAA 1 HETATM 6 C C32 U5G . . . B 2 -19.022 -18.826 1.007 1 58.73 ? C32 U5G 401 AAA 1 HETATM 7 C C33 U5G . . . B 2 -18.589 -19.228 -1.564 1 70.57 ? C33 U5G 401 AAA 1 HETATM 8 N N27 U5G . . . B 2 -15.716 -22.169 0.09 1 50.49 ? N27 U5G 401 AAA 1 HETATM 9 C C22 U5G . . . B 2 -15.033 -23.251 -0.579 1 46.54 ? C22 U5G 401 AAA 1 HETATM 10 C C23 U5G . . . B 2 -13.598 -22.786 -0.868 1 46.33 ? C23 U5G 401 AAA 1 HETATM 11 C C24 U5G . . . B 2 -13.62 -21.539 -1.746 1 48.34 ? C24 U5G 401 AAA 1 HETATM 12 C C25 U5G . . . B 2 -12.872 -22.363 0.391 1 42.74 ? C25 U5G 401 AAA 1 HETATM 13 C C26 U5G . . . B 2 -12.852 -23.881 -1.649 1 49 ? C26 U5G 401 AAA 1 HETATM 14 C C21 U5G . . . B 2 -15.145 -24.51 0.241 1 42.79 ? C21 U5G 401 AAA 1 HETATM 15 O O35 U5G . . . B 2 -14.852 -24.517 1.408 1 47.21 ? O35 U5G 401 AAA 1 HETATM 16 N N20 U5G . . . B 2 -15.561 -25.612 -0.331 1 42.44 ? N20 U5G 401 AAA 1 HETATM 17 C C19 U5G . . . B 2 -16.034 -25.816 -1.706 1 45.76 ? C19 U5G 401 AAA 1 HETATM 18 C C13 U5G . . . B 2 -15.584 -26.832 0.433 1 43.71 ? C13 U5G 401 AAA 1 HETATM 19 C C14 U5G . . . B 2 -16.565 -27.754 -0.292 1 44.32 ? C14 U5G 401 AAA 1 HETATM 20 C C15 U5G . . . B 2 -16.769 -27.129 -1.662 1 42.92 ? C15 U5G 401 AAA 1 HETATM 21 C C16 U5G . . . B 2 -17.966 -27.309 -0.724 1 46.24 ? C16 U5G 401 AAA 1 HETATM 22 C C17 U5G . . . B 2 -18.958 -28.382 -1.203 1 49.95 ? C17 U5G 401 AAA 1 HETATM 23 C C18 U5G . . . B 2 -18.55 -26.017 -0.167 1 44.73 ? C18 U5G 401 AAA 1 HETATM 24 C C12 U5G . . . B 2 -14.252 -27.497 0.442 1 44.36 ? C12 U5G 401 AAA 1 HETATM 25 O O36 U5G . . . B 2 -13.795 -27.84 -0.626 1 39.16 ? O36 U5G 401 AAA 1 HETATM 26 N N11 U5G . . . B 2 -13.686 -27.719 1.634 1 44.53 ? N11 U5G 401 AAA 1 HETATM 27 C C05 U5G . . . B 2 -12.39 -28.326 1.766 1 48.67 ? C05 U5G 401 AAA 1 HETATM 28 C C06 U5G . . . B 2 -11.475 -27.532 2.724 1 50.36 ? C06 U5G 401 AAA 1 HETATM 29 C C07 U5G . . . B 2 -11.24 -26.182 2.025 1 54.65 ? C07 U5G 401 AAA 1 HETATM 30 C C10 U5G . . . B 2 -10.07 -25.319 2.502 1 58.89 ? C10 U5G 401 AAA 1 HETATM 31 C C08 U5G . . . B 2 -10.609 -26.229 0.618 1 53.88 ? C08 U5G 401 AAA 1 HETATM 32 C C09 U5G . . . B 2 -9.51 -25.266 1.074 1 58 ? C09 U5G 401 AAA 1 HETATM 33 O O04 U5G . . . B 2 -13.713 -30.429 1.344 1 49.36 ? O04 U5G 401 AAA 1 HETATM 34 C C03 U5G . . . B 2 -12.565 -29.827 1.968 1 49.35 ? C03 U5G 401 AAA 1 HETATM 35 O O01 U5G . . . B 2 -10.501 -30.564 2.95 1 44.93 ? O01 U5G 401 AAA 1 HETATM 36 C C02 U5G . . . B 2 -11.338 -30.689 2.075 1 48.52 ? C02 U5G 401 AAA 1 HETATM 37 N N37 U5G . . . B 2 -11.199 -31.674 1.069 1 53.75 ? N37 U5G 401 AAA 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 69 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1019 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #