data_7NCD # _model_server_result.job_id 3a0XPWZCgxInakS-E8Mzkw _model_server_result.datetime_utc '2025-03-04 22:06:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ncd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 7NCD # _exptl.entry_id 7NCD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NCD _cell.length_a 54.03 _cell.length_b 85.03 _cell.length_c 345.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,N,O 1 1 C,D,K,L,P,Q 2 1 E,F,M,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 220 A GLU 207 1_555 H NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc2 H NA NA . A NA 302 1_555 N O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7NCD _atom_sites.fract_transf_matrix[1][1] 0.018508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 EDO A 1 301 1 EDO EDO . H 3 NA A 1 302 7 NA NA . I 2 EDO B 1 301 3 EDO EDO . J 4 CL B 1 302 6 CL CL . K 2 EDO C 1 301 4 EDO EDO . L 2 EDO D 1 301 5 EDO EDO . M 2 EDO F 1 301 2 EDO EDO . N 5 HOH A 1 401 234 HOH HOH . N 5 HOH A 2 402 80 HOH HOH . N 5 HOH A 3 403 298 HOH HOH . N 5 HOH A 4 404 114 HOH HOH . N 5 HOH A 5 405 256 HOH HOH . N 5 HOH A 6 406 46 HOH HOH . N 5 HOH A 7 407 82 HOH HOH . N 5 HOH A 8 408 43 HOH HOH . N 5 HOH A 9 409 172 HOH HOH . N 5 HOH A 10 410 99 HOH HOH . N 5 HOH A 11 411 45 HOH HOH . N 5 HOH A 12 412 61 HOH HOH . N 5 HOH A 13 413 25 HOH HOH . N 5 HOH A 14 414 9 HOH HOH . N 5 HOH A 15 415 58 HOH HOH . N 5 HOH A 16 416 56 HOH HOH . N 5 HOH A 17 417 154 HOH HOH . N 5 HOH A 18 418 136 HOH HOH . N 5 HOH A 19 419 141 HOH HOH . N 5 HOH A 20 420 120 HOH HOH . N 5 HOH A 21 421 262 HOH HOH . N 5 HOH A 22 422 52 HOH HOH . N 5 HOH A 23 423 153 HOH HOH . N 5 HOH A 24 424 296 HOH HOH . N 5 HOH A 25 425 36 HOH HOH . N 5 HOH A 26 426 157 HOH HOH . N 5 HOH A 27 427 270 HOH HOH . N 5 HOH A 28 428 28 HOH HOH . N 5 HOH A 29 429 102 HOH HOH . N 5 HOH A 30 430 182 HOH HOH . N 5 HOH A 31 431 297 HOH HOH . N 5 HOH A 32 432 12 HOH HOH . N 5 HOH A 33 433 222 HOH HOH . N 5 HOH A 34 434 32 HOH HOH . N 5 HOH A 35 435 254 HOH HOH . N 5 HOH A 36 436 168 HOH HOH . N 5 HOH A 37 437 37 HOH HOH . N 5 HOH A 38 438 199 HOH HOH . N 5 HOH A 39 439 104 HOH HOH . N 5 HOH A 40 440 185 HOH HOH . N 5 HOH A 41 441 78 HOH HOH . N 5 HOH A 42 442 53 HOH HOH . N 5 HOH A 43 443 195 HOH HOH . N 5 HOH A 44 444 135 HOH HOH . N 5 HOH A 45 445 66 HOH HOH . N 5 HOH A 46 446 40 HOH HOH . N 5 HOH A 47 447 128 HOH HOH . N 5 HOH A 48 448 209 HOH HOH . N 5 HOH A 49 449 245 HOH HOH . N 5 HOH A 50 450 244 HOH HOH . N 5 HOH A 51 451 30 HOH HOH . N 5 HOH A 52 452 150 HOH HOH . N 5 HOH A 53 453 10 HOH HOH . N 5 HOH A 54 454 235 HOH HOH . N 5 HOH A 55 455 59 HOH HOH . N 5 HOH A 56 456 148 HOH HOH . N 5 HOH A 57 457 267 HOH HOH . N 5 HOH A 58 458 198 HOH HOH . N 5 HOH A 59 459 239 HOH HOH . O 5 HOH B 1 401 34 HOH HOH . O 5 HOH B 2 402 162 HOH HOH . O 5 HOH B 3 403 127 HOH HOH . O 5 HOH B 4 404 11 HOH HOH . O 5 HOH B 5 405 282 HOH HOH . O 5 HOH B 6 406 193 HOH HOH . O 5 HOH B 7 407 54 HOH HOH . O 5 HOH B 8 408 17 HOH HOH . O 5 HOH B 9 409 81 HOH HOH . O 5 HOH B 10 410 196 HOH HOH . O 5 HOH B 11 411 65 HOH HOH . O 5 HOH B 12 412 265 HOH HOH . O 5 HOH B 13 413 14 HOH HOH . O 5 HOH B 14 414 116 HOH HOH . O 5 HOH B 15 415 112 HOH HOH . O 5 HOH B 16 416 49 HOH HOH . O 5 HOH B 17 417 72 HOH HOH . O 5 HOH B 18 418 86 HOH HOH . O 5 HOH B 19 419 63 HOH HOH . O 5 HOH B 20 420 16 HOH HOH . O 5 HOH B 21 421 106 HOH HOH . O 5 HOH B 22 422 121 HOH HOH . O 5 HOH B 23 423 266 HOH HOH . O 5 HOH B 24 424 174 HOH HOH . O 5 HOH B 25 425 44 HOH HOH . O 5 HOH B 26 426 92 HOH HOH . O 5 HOH B 27 427 50 HOH HOH . O 5 HOH B 28 428 105 HOH HOH . O 5 HOH B 29 429 260 HOH HOH . O 5 HOH B 30 430 83 HOH HOH . O 5 HOH B 31 431 75 HOH HOH . O 5 HOH B 32 432 228 HOH HOH . O 5 HOH B 33 433 303 HOH HOH . O 5 HOH B 34 434 176 HOH HOH . O 5 HOH B 35 435 233 HOH HOH . O 5 HOH B 36 436 171 HOH HOH . O 5 HOH B 37 437 200 HOH HOH . O 5 HOH B 38 438 206 HOH HOH . O 5 HOH B 39 439 225 HOH HOH . O 5 HOH B 40 440 219 HOH HOH . O 5 HOH B 41 441 15 HOH HOH . O 5 HOH B 42 442 300 HOH HOH . O 5 HOH B 43 443 161 HOH HOH . O 5 HOH B 44 444 295 HOH HOH . O 5 HOH B 45 445 208 HOH HOH . O 5 HOH B 46 446 41 HOH HOH . O 5 HOH B 47 447 179 HOH HOH . O 5 HOH B 48 448 281 HOH HOH . O 5 HOH B 49 449 264 HOH HOH . O 5 HOH B 50 450 149 HOH HOH . O 5 HOH B 51 451 293 HOH HOH . O 5 HOH B 52 452 173 HOH HOH . O 5 HOH B 53 453 292 HOH HOH . P 5 HOH C 1 401 117 HOH HOH . P 5 HOH C 2 402 64 HOH HOH . P 5 HOH C 3 403 169 HOH HOH . P 5 HOH C 4 404 163 HOH HOH . P 5 HOH C 5 405 35 HOH HOH . P 5 HOH C 6 406 125 HOH HOH . P 5 HOH C 7 407 164 HOH HOH . P 5 HOH C 8 408 126 HOH HOH . P 5 HOH C 9 409 76 HOH HOH . P 5 HOH C 10 410 130 HOH HOH . P 5 HOH C 11 411 22 HOH HOH . P 5 HOH C 12 412 178 HOH HOH . P 5 HOH C 13 413 253 HOH HOH . P 5 HOH C 14 414 90 HOH HOH . P 5 HOH C 15 415 103 HOH HOH . P 5 HOH C 16 416 288 HOH HOH . P 5 HOH C 17 417 113 HOH HOH . P 5 HOH C 18 418 261 HOH HOH . P 5 HOH C 19 419 8 HOH HOH . P 5 HOH C 20 420 108 HOH HOH . P 5 HOH C 21 421 89 HOH HOH . P 5 HOH C 22 422 217 HOH HOH . P 5 HOH C 23 423 42 HOH HOH . P 5 HOH C 24 424 146 HOH HOH . P 5 HOH C 25 425 170 HOH HOH . P 5 HOH C 26 426 257 HOH HOH . P 5 HOH C 27 427 211 HOH HOH . P 5 HOH C 28 428 97 HOH HOH . P 5 HOH C 29 429 95 HOH HOH . P 5 HOH C 30 430 289 HOH HOH . P 5 HOH C 31 431 192 HOH HOH . P 5 HOH C 32 432 94 HOH HOH . P 5 HOH C 33 433 142 HOH HOH . P 5 HOH C 34 434 212 HOH HOH . P 5 HOH C 35 435 51 HOH HOH . P 5 HOH C 36 436 263 HOH HOH . P 5 HOH C 37 437 302 HOH HOH . P 5 HOH C 38 438 118 HOH HOH . P 5 HOH C 39 439 79 HOH HOH . P 5 HOH C 40 440 134 HOH HOH . P 5 HOH C 41 441 186 HOH HOH . P 5 HOH C 42 442 129 HOH HOH . P 5 HOH C 43 443 272 HOH HOH . P 5 HOH C 44 444 160 HOH HOH . P 5 HOH C 45 445 218 HOH HOH . P 5 HOH C 46 446 278 HOH HOH . P 5 HOH C 47 447 190 HOH HOH . Q 5 HOH D 1 401 238 HOH HOH . Q 5 HOH D 2 402 279 HOH HOH . Q 5 HOH D 3 403 250 HOH HOH . Q 5 HOH D 4 404 205 HOH HOH . Q 5 HOH D 5 405 20 HOH HOH . Q 5 HOH D 6 406 67 HOH HOH . Q 5 HOH D 7 407 249 HOH HOH . Q 5 HOH D 8 408 269 HOH HOH . Q 5 HOH D 9 409 247 HOH HOH . Q 5 HOH D 10 410 241 HOH HOH . Q 5 HOH D 11 411 85 HOH HOH . Q 5 HOH D 12 412 291 HOH HOH . Q 5 HOH D 13 413 259 HOH HOH . Q 5 HOH D 14 414 216 HOH HOH . Q 5 HOH D 15 415 71 HOH HOH . Q 5 HOH D 16 416 140 HOH HOH . Q 5 HOH D 17 417 268 HOH HOH . Q 5 HOH D 18 418 299 HOH HOH . Q 5 HOH D 19 419 107 HOH HOH . Q 5 HOH D 20 420 246 HOH HOH . Q 5 HOH D 21 421 194 HOH HOH . Q 5 HOH D 22 422 119 HOH HOH . Q 5 HOH D 23 423 122 HOH HOH . Q 5 HOH D 24 424 151 HOH HOH . Q 5 HOH D 25 425 285 HOH HOH . Q 5 HOH D 26 426 21 HOH HOH . Q 5 HOH D 27 427 207 HOH HOH . Q 5 HOH D 28 428 91 HOH HOH . Q 5 HOH D 29 429 258 HOH HOH . Q 5 HOH D 30 430 33 HOH HOH . Q 5 HOH D 31 431 213 HOH HOH . Q 5 HOH D 32 432 133 HOH HOH . Q 5 HOH D 33 433 175 HOH HOH . Q 5 HOH D 34 434 203 HOH HOH . Q 5 HOH D 35 435 70 HOH HOH . Q 5 HOH D 36 436 201 HOH HOH . Q 5 HOH D 37 437 236 HOH HOH . Q 5 HOH D 38 438 84 HOH HOH . Q 5 HOH D 39 439 248 HOH HOH . Q 5 HOH D 40 440 287 HOH HOH . Q 5 HOH D 41 441 69 HOH HOH . Q 5 HOH D 42 442 226 HOH HOH . Q 5 HOH D 43 443 184 HOH HOH . Q 5 HOH D 44 444 277 HOH HOH . Q 5 HOH D 45 445 138 HOH HOH . Q 5 HOH D 46 446 255 HOH HOH . Q 5 HOH D 47 447 251 HOH HOH . Q 5 HOH D 48 448 214 HOH HOH . R 5 HOH E 1 301 115 HOH HOH . R 5 HOH E 2 302 155 HOH HOH . R 5 HOH E 3 303 19 HOH HOH . R 5 HOH E 4 304 290 HOH HOH . R 5 HOH E 5 305 39 HOH HOH . R 5 HOH E 6 306 109 HOH HOH . R 5 HOH E 7 307 252 HOH HOH . R 5 HOH E 8 308 215 HOH HOH . R 5 HOH E 9 309 210 HOH HOH . R 5 HOH E 10 310 13 HOH HOH . R 5 HOH E 11 311 132 HOH HOH . R 5 HOH E 12 312 227 HOH HOH . R 5 HOH E 13 313 187 HOH HOH . R 5 HOH E 14 314 197 HOH HOH . R 5 HOH E 15 315 301 HOH HOH . R 5 HOH E 16 316 144 HOH HOH . R 5 HOH E 17 317 143 HOH HOH . R 5 HOH E 18 318 158 HOH HOH . R 5 HOH E 19 319 96 HOH HOH . R 5 HOH E 20 320 87 HOH HOH . R 5 HOH E 21 321 137 HOH HOH . R 5 HOH E 22 322 286 HOH HOH . R 5 HOH E 23 323 111 HOH HOH . R 5 HOH E 24 324 204 HOH HOH . R 5 HOH E 25 325 88 HOH HOH . R 5 HOH E 26 326 166 HOH HOH . R 5 HOH E 27 327 159 HOH HOH . R 5 HOH E 28 328 73 HOH HOH . R 5 HOH E 29 329 110 HOH HOH . R 5 HOH E 30 330 284 HOH HOH . R 5 HOH E 31 331 183 HOH HOH . R 5 HOH E 32 332 223 HOH HOH . R 5 HOH E 33 333 55 HOH HOH . R 5 HOH E 34 334 237 HOH HOH . R 5 HOH E 35 335 294 HOH HOH . R 5 HOH E 36 336 123 HOH HOH . R 5 HOH E 37 337 100 HOH HOH . R 5 HOH E 38 338 220 HOH HOH . R 5 HOH E 39 339 242 HOH HOH . S 5 HOH F 1 401 23 HOH HOH . S 5 HOH F 2 402 181 HOH HOH . S 5 HOH F 3 403 93 HOH HOH . S 5 HOH F 4 404 24 HOH HOH . S 5 HOH F 5 405 224 HOH HOH . S 5 HOH F 6 406 167 HOH HOH . S 5 HOH F 7 407 47 HOH HOH . S 5 HOH F 8 408 124 HOH HOH . S 5 HOH F 9 409 152 HOH HOH . S 5 HOH F 10 410 57 HOH HOH . S 5 HOH F 11 411 177 HOH HOH . S 5 HOH F 12 412 202 HOH HOH . S 5 HOH F 13 413 191 HOH HOH . S 5 HOH F 14 414 145 HOH HOH . S 5 HOH F 15 415 180 HOH HOH . S 5 HOH F 16 416 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 2 -14.062 -20.228 132.932 1 39.55 ? C1 EDO 301 D 1 HETATM 2 O O1 EDO . . . L 2 -15.094 -20.179 133.895 1 44.16 ? O1 EDO 301 D 1 HETATM 3 C C2 EDO . . . L 2 -14.534 -20.611 131.583 1 39.74 ? C2 EDO 301 D 1 HETATM 4 O O2 EDO . . . L 2 -15.874 -20.245 131.358 1 40.46 ? O2 EDO 301 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #