data_7NCD
#
_model_server_result.job_id            xRi_xs46Y2wjGa5ES6V1RA 
_model_server_result.datetime_utc      '2025-03-04 22:03:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ncd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    7NCD 
#
_exptl.entry_id    7NCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NCD 
_cell.length_a            54.03 
_cell.length_b            85.03 
_cell.length_c            345.01 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,N,O 1 1 
C,D,K,L,P,Q 2 1 
E,F,M,R,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 220 A GLU 207 1_555 H NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc2 H NA NA . A NA 302 1_555 N O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7NCD 
_atom_sites.fract_transf_matrix[1][1]    0.018508 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011761 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 EDO A 1 301 1 EDO EDO . 
H 3 NA A 1 302 7 NA NA . 
I 2 EDO B 1 301 3 EDO EDO . 
J 4 CL B 1 302 6 CL CL . 
K 2 EDO C 1 301 4 EDO EDO . 
L 2 EDO D 1 301 5 EDO EDO . 
M 2 EDO F 1 301 2 EDO EDO . 
N 5 HOH A 1 401 234 HOH HOH . 
N 5 HOH A 2 402 80 HOH HOH . 
N 5 HOH A 3 403 298 HOH HOH . 
N 5 HOH A 4 404 114 HOH HOH . 
N 5 HOH A 5 405 256 HOH HOH . 
N 5 HOH A 6 406 46 HOH HOH . 
N 5 HOH A 7 407 82 HOH HOH . 
N 5 HOH A 8 408 43 HOH HOH . 
N 5 HOH A 9 409 172 HOH HOH . 
N 5 HOH A 10 410 99 HOH HOH . 
N 5 HOH A 11 411 45 HOH HOH . 
N 5 HOH A 12 412 61 HOH HOH . 
N 5 HOH A 13 413 25 HOH HOH . 
N 5 HOH A 14 414 9 HOH HOH . 
N 5 HOH A 15 415 58 HOH HOH . 
N 5 HOH A 16 416 56 HOH HOH . 
N 5 HOH A 17 417 154 HOH HOH . 
N 5 HOH A 18 418 136 HOH HOH . 
N 5 HOH A 19 419 141 HOH HOH . 
N 5 HOH A 20 420 120 HOH HOH . 
N 5 HOH A 21 421 262 HOH HOH . 
N 5 HOH A 22 422 52 HOH HOH . 
N 5 HOH A 23 423 153 HOH HOH . 
N 5 HOH A 24 424 296 HOH HOH . 
N 5 HOH A 25 425 36 HOH HOH . 
N 5 HOH A 26 426 157 HOH HOH . 
N 5 HOH A 27 427 270 HOH HOH . 
N 5 HOH A 28 428 28 HOH HOH . 
N 5 HOH A 29 429 102 HOH HOH . 
N 5 HOH A 30 430 182 HOH HOH . 
N 5 HOH A 31 431 297 HOH HOH . 
N 5 HOH A 32 432 12 HOH HOH . 
N 5 HOH A 33 433 222 HOH HOH . 
N 5 HOH A 34 434 32 HOH HOH . 
N 5 HOH A 35 435 254 HOH HOH . 
N 5 HOH A 36 436 168 HOH HOH . 
N 5 HOH A 37 437 37 HOH HOH . 
N 5 HOH A 38 438 199 HOH HOH . 
N 5 HOH A 39 439 104 HOH HOH . 
N 5 HOH A 40 440 185 HOH HOH . 
N 5 HOH A 41 441 78 HOH HOH . 
N 5 HOH A 42 442 53 HOH HOH . 
N 5 HOH A 43 443 195 HOH HOH . 
N 5 HOH A 44 444 135 HOH HOH . 
N 5 HOH A 45 445 66 HOH HOH . 
N 5 HOH A 46 446 40 HOH HOH . 
N 5 HOH A 47 447 128 HOH HOH . 
N 5 HOH A 48 448 209 HOH HOH . 
N 5 HOH A 49 449 245 HOH HOH . 
N 5 HOH A 50 450 244 HOH HOH . 
N 5 HOH A 51 451 30 HOH HOH . 
N 5 HOH A 52 452 150 HOH HOH . 
N 5 HOH A 53 453 10 HOH HOH . 
N 5 HOH A 54 454 235 HOH HOH . 
N 5 HOH A 55 455 59 HOH HOH . 
N 5 HOH A 56 456 148 HOH HOH . 
N 5 HOH A 57 457 267 HOH HOH . 
N 5 HOH A 58 458 198 HOH HOH . 
N 5 HOH A 59 459 239 HOH HOH . 
O 5 HOH B 1 401 34 HOH HOH . 
O 5 HOH B 2 402 162 HOH HOH . 
O 5 HOH B 3 403 127 HOH HOH . 
O 5 HOH B 4 404 11 HOH HOH . 
O 5 HOH B 5 405 282 HOH HOH . 
O 5 HOH B 6 406 193 HOH HOH . 
O 5 HOH B 7 407 54 HOH HOH . 
O 5 HOH B 8 408 17 HOH HOH . 
O 5 HOH B 9 409 81 HOH HOH . 
O 5 HOH B 10 410 196 HOH HOH . 
O 5 HOH B 11 411 65 HOH HOH . 
O 5 HOH B 12 412 265 HOH HOH . 
O 5 HOH B 13 413 14 HOH HOH . 
O 5 HOH B 14 414 116 HOH HOH . 
O 5 HOH B 15 415 112 HOH HOH . 
O 5 HOH B 16 416 49 HOH HOH . 
O 5 HOH B 17 417 72 HOH HOH . 
O 5 HOH B 18 418 86 HOH HOH . 
O 5 HOH B 19 419 63 HOH HOH . 
O 5 HOH B 20 420 16 HOH HOH . 
O 5 HOH B 21 421 106 HOH HOH . 
O 5 HOH B 22 422 121 HOH HOH . 
O 5 HOH B 23 423 266 HOH HOH . 
O 5 HOH B 24 424 174 HOH HOH . 
O 5 HOH B 25 425 44 HOH HOH . 
O 5 HOH B 26 426 92 HOH HOH . 
O 5 HOH B 27 427 50 HOH HOH . 
O 5 HOH B 28 428 105 HOH HOH . 
O 5 HOH B 29 429 260 HOH HOH . 
O 5 HOH B 30 430 83 HOH HOH . 
O 5 HOH B 31 431 75 HOH HOH . 
O 5 HOH B 32 432 228 HOH HOH . 
O 5 HOH B 33 433 303 HOH HOH . 
O 5 HOH B 34 434 176 HOH HOH . 
O 5 HOH B 35 435 233 HOH HOH . 
O 5 HOH B 36 436 171 HOH HOH . 
O 5 HOH B 37 437 200 HOH HOH . 
O 5 HOH B 38 438 206 HOH HOH . 
O 5 HOH B 39 439 225 HOH HOH . 
O 5 HOH B 40 440 219 HOH HOH . 
O 5 HOH B 41 441 15 HOH HOH . 
O 5 HOH B 42 442 300 HOH HOH . 
O 5 HOH B 43 443 161 HOH HOH . 
O 5 HOH B 44 444 295 HOH HOH . 
O 5 HOH B 45 445 208 HOH HOH . 
O 5 HOH B 46 446 41 HOH HOH . 
O 5 HOH B 47 447 179 HOH HOH . 
O 5 HOH B 48 448 281 HOH HOH . 
O 5 HOH B 49 449 264 HOH HOH . 
O 5 HOH B 50 450 149 HOH HOH . 
O 5 HOH B 51 451 293 HOH HOH . 
O 5 HOH B 52 452 173 HOH HOH . 
O 5 HOH B 53 453 292 HOH HOH . 
P 5 HOH C 1 401 117 HOH HOH . 
P 5 HOH C 2 402 64 HOH HOH . 
P 5 HOH C 3 403 169 HOH HOH . 
P 5 HOH C 4 404 163 HOH HOH . 
P 5 HOH C 5 405 35 HOH HOH . 
P 5 HOH C 6 406 125 HOH HOH . 
P 5 HOH C 7 407 164 HOH HOH . 
P 5 HOH C 8 408 126 HOH HOH . 
P 5 HOH C 9 409 76 HOH HOH . 
P 5 HOH C 10 410 130 HOH HOH . 
P 5 HOH C 11 411 22 HOH HOH . 
P 5 HOH C 12 412 178 HOH HOH . 
P 5 HOH C 13 413 253 HOH HOH . 
P 5 HOH C 14 414 90 HOH HOH . 
P 5 HOH C 15 415 103 HOH HOH . 
P 5 HOH C 16 416 288 HOH HOH . 
P 5 HOH C 17 417 113 HOH HOH . 
P 5 HOH C 18 418 261 HOH HOH . 
P 5 HOH C 19 419 8 HOH HOH . 
P 5 HOH C 20 420 108 HOH HOH . 
P 5 HOH C 21 421 89 HOH HOH . 
P 5 HOH C 22 422 217 HOH HOH . 
P 5 HOH C 23 423 42 HOH HOH . 
P 5 HOH C 24 424 146 HOH HOH . 
P 5 HOH C 25 425 170 HOH HOH . 
P 5 HOH C 26 426 257 HOH HOH . 
P 5 HOH C 27 427 211 HOH HOH . 
P 5 HOH C 28 428 97 HOH HOH . 
P 5 HOH C 29 429 95 HOH HOH . 
P 5 HOH C 30 430 289 HOH HOH . 
P 5 HOH C 31 431 192 HOH HOH . 
P 5 HOH C 32 432 94 HOH HOH . 
P 5 HOH C 33 433 142 HOH HOH . 
P 5 HOH C 34 434 212 HOH HOH . 
P 5 HOH C 35 435 51 HOH HOH . 
P 5 HOH C 36 436 263 HOH HOH . 
P 5 HOH C 37 437 302 HOH HOH . 
P 5 HOH C 38 438 118 HOH HOH . 
P 5 HOH C 39 439 79 HOH HOH . 
P 5 HOH C 40 440 134 HOH HOH . 
P 5 HOH C 41 441 186 HOH HOH . 
P 5 HOH C 42 442 129 HOH HOH . 
P 5 HOH C 43 443 272 HOH HOH . 
P 5 HOH C 44 444 160 HOH HOH . 
P 5 HOH C 45 445 218 HOH HOH . 
P 5 HOH C 46 446 278 HOH HOH . 
P 5 HOH C 47 447 190 HOH HOH . 
Q 5 HOH D 1 401 238 HOH HOH . 
Q 5 HOH D 2 402 279 HOH HOH . 
Q 5 HOH D 3 403 250 HOH HOH . 
Q 5 HOH D 4 404 205 HOH HOH . 
Q 5 HOH D 5 405 20 HOH HOH . 
Q 5 HOH D 6 406 67 HOH HOH . 
Q 5 HOH D 7 407 249 HOH HOH . 
Q 5 HOH D 8 408 269 HOH HOH . 
Q 5 HOH D 9 409 247 HOH HOH . 
Q 5 HOH D 10 410 241 HOH HOH . 
Q 5 HOH D 11 411 85 HOH HOH . 
Q 5 HOH D 12 412 291 HOH HOH . 
Q 5 HOH D 13 413 259 HOH HOH . 
Q 5 HOH D 14 414 216 HOH HOH . 
Q 5 HOH D 15 415 71 HOH HOH . 
Q 5 HOH D 16 416 140 HOH HOH . 
Q 5 HOH D 17 417 268 HOH HOH . 
Q 5 HOH D 18 418 299 HOH HOH . 
Q 5 HOH D 19 419 107 HOH HOH . 
Q 5 HOH D 20 420 246 HOH HOH . 
Q 5 HOH D 21 421 194 HOH HOH . 
Q 5 HOH D 22 422 119 HOH HOH . 
Q 5 HOH D 23 423 122 HOH HOH . 
Q 5 HOH D 24 424 151 HOH HOH . 
Q 5 HOH D 25 425 285 HOH HOH . 
Q 5 HOH D 26 426 21 HOH HOH . 
Q 5 HOH D 27 427 207 HOH HOH . 
Q 5 HOH D 28 428 91 HOH HOH . 
Q 5 HOH D 29 429 258 HOH HOH . 
Q 5 HOH D 30 430 33 HOH HOH . 
Q 5 HOH D 31 431 213 HOH HOH . 
Q 5 HOH D 32 432 133 HOH HOH . 
Q 5 HOH D 33 433 175 HOH HOH . 
Q 5 HOH D 34 434 203 HOH HOH . 
Q 5 HOH D 35 435 70 HOH HOH . 
Q 5 HOH D 36 436 201 HOH HOH . 
Q 5 HOH D 37 437 236 HOH HOH . 
Q 5 HOH D 38 438 84 HOH HOH . 
Q 5 HOH D 39 439 248 HOH HOH . 
Q 5 HOH D 40 440 287 HOH HOH . 
Q 5 HOH D 41 441 69 HOH HOH . 
Q 5 HOH D 42 442 226 HOH HOH . 
Q 5 HOH D 43 443 184 HOH HOH . 
Q 5 HOH D 44 444 277 HOH HOH . 
Q 5 HOH D 45 445 138 HOH HOH . 
Q 5 HOH D 46 446 255 HOH HOH . 
Q 5 HOH D 47 447 251 HOH HOH . 
Q 5 HOH D 48 448 214 HOH HOH . 
R 5 HOH E 1 301 115 HOH HOH . 
R 5 HOH E 2 302 155 HOH HOH . 
R 5 HOH E 3 303 19 HOH HOH . 
R 5 HOH E 4 304 290 HOH HOH . 
R 5 HOH E 5 305 39 HOH HOH . 
R 5 HOH E 6 306 109 HOH HOH . 
R 5 HOH E 7 307 252 HOH HOH . 
R 5 HOH E 8 308 215 HOH HOH . 
R 5 HOH E 9 309 210 HOH HOH . 
R 5 HOH E 10 310 13 HOH HOH . 
R 5 HOH E 11 311 132 HOH HOH . 
R 5 HOH E 12 312 227 HOH HOH . 
R 5 HOH E 13 313 187 HOH HOH . 
R 5 HOH E 14 314 197 HOH HOH . 
R 5 HOH E 15 315 301 HOH HOH . 
R 5 HOH E 16 316 144 HOH HOH . 
R 5 HOH E 17 317 143 HOH HOH . 
R 5 HOH E 18 318 158 HOH HOH . 
R 5 HOH E 19 319 96 HOH HOH . 
R 5 HOH E 20 320 87 HOH HOH . 
R 5 HOH E 21 321 137 HOH HOH . 
R 5 HOH E 22 322 286 HOH HOH . 
R 5 HOH E 23 323 111 HOH HOH . 
R 5 HOH E 24 324 204 HOH HOH . 
R 5 HOH E 25 325 88 HOH HOH . 
R 5 HOH E 26 326 166 HOH HOH . 
R 5 HOH E 27 327 159 HOH HOH . 
R 5 HOH E 28 328 73 HOH HOH . 
R 5 HOH E 29 329 110 HOH HOH . 
R 5 HOH E 30 330 284 HOH HOH . 
R 5 HOH E 31 331 183 HOH HOH . 
R 5 HOH E 32 332 223 HOH HOH . 
R 5 HOH E 33 333 55 HOH HOH . 
R 5 HOH E 34 334 237 HOH HOH . 
R 5 HOH E 35 335 294 HOH HOH . 
R 5 HOH E 36 336 123 HOH HOH . 
R 5 HOH E 37 337 100 HOH HOH . 
R 5 HOH E 38 338 220 HOH HOH . 
R 5 HOH E 39 339 242 HOH HOH . 
S 5 HOH F 1 401 23 HOH HOH . 
S 5 HOH F 2 402 181 HOH HOH . 
S 5 HOH F 3 403 93 HOH HOH . 
S 5 HOH F 4 404 24 HOH HOH . 
S 5 HOH F 5 405 224 HOH HOH . 
S 5 HOH F 6 406 167 HOH HOH . 
S 5 HOH F 7 407 47 HOH HOH . 
S 5 HOH F 8 408 124 HOH HOH . 
S 5 HOH F 9 409 152 HOH HOH . 
S 5 HOH F 10 410 57 HOH HOH . 
S 5 HOH F 11 411 177 HOH HOH . 
S 5 HOH F 12 412 202 HOH HOH . 
S 5 HOH F 13 413 191 HOH HOH . 
S 5 HOH F 14 414 145 HOH HOH . 
S 5 HOH F 15 415 180 HOH HOH . 
S 5 HOH F 16 416 243 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -36.992 
_atom_site.Cartn_y               7.246 
_atom_site.Cartn_z               81.572 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#