data_7NDE # _model_server_result.job_id Hy4mcE3TTyDsZyAIXHdImw _model_server_result.datetime_utc '2024-10-19 06:51:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NDE # _exptl.entry_id 7NDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NDE _cell.length_a 69.589 _cell.length_b 69.589 _cell.length_c 111.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 25 1_555 A SG CYS 41 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 71 A CYS 89 1_555 A SG CYS 80 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A ND2 ASN 190 A ASN 208 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NDE _atom_sites.fract_transf_matrix[1][1] 0.01437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 252 NAG NAG . C 3 EDO A 1 302 401 EDO EDO . D 4 HOH A 1 401 153 HOH HOH . D 4 HOH A 2 402 124 HOH HOH . D 4 HOH A 3 403 172 HOH HOH . D 4 HOH A 4 404 97 HOH HOH . D 4 HOH A 5 405 149 HOH HOH . D 4 HOH A 6 406 177 HOH HOH . D 4 HOH A 7 407 41 HOH HOH . D 4 HOH A 8 408 57 HOH HOH . D 4 HOH A 9 409 168 HOH HOH . D 4 HOH A 10 410 96 HOH HOH . D 4 HOH A 11 411 82 HOH HOH . D 4 HOH A 12 412 170 HOH HOH . D 4 HOH A 13 413 50 HOH HOH . D 4 HOH A 14 414 95 HOH HOH . D 4 HOH A 15 415 34 HOH HOH . D 4 HOH A 16 416 7 HOH HOH . D 4 HOH A 17 417 24 HOH HOH . D 4 HOH A 18 418 65 HOH HOH . D 4 HOH A 19 419 165 HOH HOH . D 4 HOH A 20 420 90 HOH HOH . D 4 HOH A 21 421 81 HOH HOH . D 4 HOH A 22 422 151 HOH HOH . D 4 HOH A 23 423 18 HOH HOH . D 4 HOH A 24 424 54 HOH HOH . D 4 HOH A 25 425 186 HOH HOH . D 4 HOH A 26 426 35 HOH HOH . D 4 HOH A 27 427 148 HOH HOH . D 4 HOH A 28 428 25 HOH HOH . D 4 HOH A 29 429 154 HOH HOH . D 4 HOH A 30 430 143 HOH HOH . D 4 HOH A 31 431 5 HOH HOH . D 4 HOH A 32 432 36 HOH HOH . D 4 HOH A 33 433 144 HOH HOH . D 4 HOH A 34 434 48 HOH HOH . D 4 HOH A 35 435 110 HOH HOH . D 4 HOH A 36 436 185 HOH HOH . D 4 HOH A 37 437 22 HOH HOH . D 4 HOH A 38 438 156 HOH HOH . D 4 HOH A 39 439 137 HOH HOH . D 4 HOH A 40 440 47 HOH HOH . D 4 HOH A 41 441 1 HOH HOH . D 4 HOH A 42 442 85 HOH HOH . D 4 HOH A 43 443 136 HOH HOH . D 4 HOH A 44 444 53 HOH HOH . D 4 HOH A 45 445 58 HOH HOH . D 4 HOH A 46 446 123 HOH HOH . D 4 HOH A 47 447 31 HOH HOH . D 4 HOH A 48 448 19 HOH HOH . D 4 HOH A 49 449 37 HOH HOH . D 4 HOH A 50 450 17 HOH HOH . D 4 HOH A 51 451 9 HOH HOH . D 4 HOH A 52 452 71 HOH HOH . D 4 HOH A 53 453 79 HOH HOH . D 4 HOH A 54 454 87 HOH HOH . D 4 HOH A 55 455 69 HOH HOH . D 4 HOH A 56 456 11 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 10 HOH HOH . D 4 HOH A 59 459 61 HOH HOH . D 4 HOH A 60 460 91 HOH HOH . D 4 HOH A 61 461 13 HOH HOH . D 4 HOH A 62 462 68 HOH HOH . D 4 HOH A 63 463 39 HOH HOH . D 4 HOH A 64 464 55 HOH HOH . D 4 HOH A 65 465 73 HOH HOH . D 4 HOH A 66 466 4 HOH HOH . D 4 HOH A 67 467 32 HOH HOH . D 4 HOH A 68 468 166 HOH HOH . D 4 HOH A 69 469 169 HOH HOH . D 4 HOH A 70 470 66 HOH HOH . D 4 HOH A 71 471 6 HOH HOH . D 4 HOH A 72 472 56 HOH HOH . D 4 HOH A 73 473 38 HOH HOH . D 4 HOH A 74 474 21 HOH HOH . D 4 HOH A 75 475 2 HOH HOH . D 4 HOH A 76 476 140 HOH HOH . D 4 HOH A 77 477 42 HOH HOH . D 4 HOH A 78 478 3 HOH HOH . D 4 HOH A 79 479 27 HOH HOH . D 4 HOH A 80 480 152 HOH HOH . D 4 HOH A 81 481 94 HOH HOH . D 4 HOH A 82 482 30 HOH HOH . D 4 HOH A 83 483 14 HOH HOH . D 4 HOH A 84 484 28 HOH HOH . D 4 HOH A 85 485 64 HOH HOH . D 4 HOH A 86 486 167 HOH HOH . D 4 HOH A 87 487 134 HOH HOH . D 4 HOH A 88 488 133 HOH HOH . D 4 HOH A 89 489 63 HOH HOH . D 4 HOH A 90 490 93 HOH HOH . D 4 HOH A 91 491 129 HOH HOH . D 4 HOH A 92 492 12 HOH HOH . D 4 HOH A 93 493 70 HOH HOH . D 4 HOH A 94 494 15 HOH HOH . D 4 HOH A 95 495 67 HOH HOH . D 4 HOH A 96 496 118 HOH HOH . D 4 HOH A 97 497 75 HOH HOH . D 4 HOH A 98 498 16 HOH HOH . D 4 HOH A 99 499 78 HOH HOH . D 4 HOH A 100 500 83 HOH HOH . D 4 HOH A 101 501 26 HOH HOH . D 4 HOH A 102 502 147 HOH HOH . D 4 HOH A 103 503 111 HOH HOH . D 4 HOH A 104 504 175 HOH HOH . D 4 HOH A 105 505 135 HOH HOH . D 4 HOH A 106 506 23 HOH HOH . D 4 HOH A 107 507 43 HOH HOH . D 4 HOH A 108 508 121 HOH HOH . D 4 HOH A 109 509 72 HOH HOH . D 4 HOH A 110 510 183 HOH HOH . D 4 HOH A 111 511 162 HOH HOH . D 4 HOH A 112 512 157 HOH HOH . D 4 HOH A 113 513 104 HOH HOH . D 4 HOH A 114 514 8 HOH HOH . D 4 HOH A 115 515 89 HOH HOH . D 4 HOH A 116 516 173 HOH HOH . D 4 HOH A 117 517 159 HOH HOH . D 4 HOH A 118 518 92 HOH HOH . D 4 HOH A 119 519 46 HOH HOH . D 4 HOH A 120 520 105 HOH HOH . D 4 HOH A 121 521 77 HOH HOH . D 4 HOH A 122 522 99 HOH HOH . D 4 HOH A 123 523 29 HOH HOH . D 4 HOH A 124 524 49 HOH HOH . D 4 HOH A 125 525 108 HOH HOH . D 4 HOH A 126 526 160 HOH HOH . D 4 HOH A 127 527 45 HOH HOH . D 4 HOH A 128 528 127 HOH HOH . D 4 HOH A 129 529 112 HOH HOH . D 4 HOH A 130 530 33 HOH HOH . D 4 HOH A 131 531 44 HOH HOH . D 4 HOH A 132 532 181 HOH HOH . D 4 HOH A 133 533 164 HOH HOH . D 4 HOH A 134 534 120 HOH HOH . D 4 HOH A 135 535 51 HOH HOH . D 4 HOH A 136 536 119 HOH HOH . D 4 HOH A 137 537 182 HOH HOH . D 4 HOH A 138 538 107 HOH HOH . D 4 HOH A 139 539 176 HOH HOH . D 4 HOH A 140 540 20 HOH HOH . D 4 HOH A 141 541 101 HOH HOH . D 4 HOH A 142 542 113 HOH HOH . D 4 HOH A 143 543 132 HOH HOH . D 4 HOH A 144 544 158 HOH HOH . D 4 HOH A 145 545 84 HOH HOH . D 4 HOH A 146 546 174 HOH HOH . D 4 HOH A 147 547 126 HOH HOH . D 4 HOH A 148 548 142 HOH HOH . D 4 HOH A 149 549 125 HOH HOH . D 4 HOH A 150 550 117 HOH HOH . D 4 HOH A 151 551 155 HOH HOH . D 4 HOH A 152 552 114 HOH HOH . D 4 HOH A 153 553 88 HOH HOH . D 4 HOH A 154 554 171 HOH HOH . D 4 HOH A 155 555 98 HOH HOH . D 4 HOH A 156 556 116 HOH HOH . D 4 HOH A 157 557 146 HOH HOH . D 4 HOH A 158 558 180 HOH HOH . D 4 HOH A 159 559 145 HOH HOH . D 4 HOH A 160 560 139 HOH HOH . D 4 HOH A 161 561 60 HOH HOH . D 4 HOH A 162 562 179 HOH HOH . D 4 HOH A 163 563 86 HOH HOH . D 4 HOH A 164 564 40 HOH HOH . D 4 HOH A 165 565 184 HOH HOH . D 4 HOH A 166 566 102 HOH HOH . D 4 HOH A 167 567 150 HOH HOH . D 4 HOH A 168 568 163 HOH HOH . D 4 HOH A 169 569 178 HOH HOH . D 4 HOH A 170 570 138 HOH HOH . D 4 HOH A 171 571 106 HOH HOH . D 4 HOH A 172 572 62 HOH HOH . D 4 HOH A 173 573 122 HOH HOH . D 4 HOH A 174 574 80 HOH HOH . D 4 HOH A 175 575 52 HOH HOH . D 4 HOH A 176 576 115 HOH HOH . D 4 HOH A 177 577 74 HOH HOH . D 4 HOH A 178 578 76 HOH HOH . D 4 HOH A 179 579 100 HOH HOH . D 4 HOH A 180 580 141 HOH HOH . D 4 HOH A 181 581 161 HOH HOH . D 4 HOH A 182 582 130 HOH HOH . D 4 HOH A 183 583 103 HOH HOH . D 4 HOH A 184 584 128 HOH HOH . D 4 HOH A 185 585 131 HOH HOH . D 4 HOH A 186 586 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 30.409 69.244 52.899 1 67.82 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 31.411 68.473 52.031 1 63.74 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 32.83 68.988 52.279 1 73.02 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 32.888 70.501 52.11 1 75.93 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 31.819 71.176 52.963 1 86.33 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 31.741 72.669 52.739 1 82.64 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 31.343 66.104 51.343 1 47.5 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 31.261 64.69 51.828 1 44.36 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 31.334 67.045 52.297 1 53.31 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 33.739 68.367 51.376 1 58.26 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 34.165 70.986 52.507 1 75.05 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 30.527 70.64 52.642 1 67.61 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 31.346 72.978 51.409 1 80.82 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 31.413 66.381 50.144 1 35.9 ? O7 NAG 301 A 1 HETATM 15 H H4 NAG . . . B 2 32.733 70.718 51.171 1 91.16 ? H4 NAG 301 A 1 HETATM 16 H H5 NAG . . . B 2 32.008 71.004 53.905 1 103.64 ? H5 NAG 301 A 1 HETATM 17 H H61 NAG . . . B 2 32.617 73.063 52.91 1 99.2 ? H61 NAG 301 A 1 HETATM 18 H H62 NAG . . . B 2 31.092 73.051 53.36 1 99.2 ? H62 NAG 301 A 1 HETATM 19 H H81 NAG . . . B 2 31.216 64.086 51.062 1 53.28 ? H81 NAG 301 A 1 HETATM 20 H H82 NAG . . . B 2 30.461 64.58 52.376 1 53.28 ? H82 NAG 301 A 1 HETATM 21 H H83 NAG . . . B 2 32.052 64.482 52.361 1 53.28 ? H83 NAG 301 A 1 HETATM 22 H HN2 NAG . . . B 2 31.276 66.773 53.165 1 64.02 ? HN2 NAG 301 A 1 HETATM 23 H HO4 NAG . . . B 2 34.52 71.458 51.844 1 90.1 ? HO4 NAG 301 A 1 HETATM 24 H HO6 NAG . . . B 2 30.661 72.463 51.176 1 97.02 ? HO6 NAG 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #