data_7NDL
#
_model_server_result.job_id            6a7837QMs5tAg6hyGaSG5w 
_model_server_result.datetime_utc      '2024-11-08 01:43:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ndl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    7NDL 
#
_exptl.entry_id    7NDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLUCOSE-6-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NDL 
_cell.length_a            153.615 
_cell.length_b            153.615 
_cell.length_c            166.132 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 241 A ASP 242 1_555 A N SEP 242 A SEP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C SEP 242 A SEP 243 1_555 A N THR 243 A THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                G6Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLUCOSE-6-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 G6Q sing 83 n n 
C1 O1 G6Q doub 84 n n 
C1 H1 G6Q sing 85 n n 
C2 C3 G6Q sing 86 n n 
C2 O2 G6Q sing 87 n n 
C2 H2 G6Q sing 88 n n 
C3 C4 G6Q sing 89 n n 
C3 O3 G6Q sing 90 n n 
C3 H3 G6Q sing 91 n n 
C4 C5 G6Q sing 92 n n 
C4 O4 G6Q sing 93 n n 
C4 H4 G6Q sing 94 n n 
C5 C6 G6Q sing 95 n n 
C5 O5 G6Q sing 96 n n 
C5 H5 G6Q sing 97 n n 
C6 O6 G6Q sing 98 n n 
C6 H61 G6Q sing 99 n n 
C6 H62 G6Q sing 100 n n 
O2 HO2 G6Q sing 101 n n 
O3 HO3 G6Q sing 102 n n 
O4 HO4 G6Q sing 103 n n 
O5 HO5 G6Q sing 104 n n 
O6 P G6Q sing 105 n n 
P O1P G6Q doub 106 n n 
P O2P G6Q sing 107 n n 
P O3P G6Q sing 108 n n 
O2P HOP2 G6Q sing 109 n n 
O3P HOP3 G6Q sing 110 n n 
#
_atom_sites.entry_id                     7NDL 
_atom_sites.fract_transf_matrix[1][1]    0.00651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G6Q A 1 701 1 G6Q G6Q . 
D 3 GLU A 1 702 1 GLU GLU . 
E 2 G6Q B 1 701 2 G6Q G6Q . 
F 4 HOH A 1 801 248 HOH HOH . 
F 4 HOH A 2 802 2 HOH HOH . 
F 4 HOH A 3 803 195 HOH HOH . 
F 4 HOH A 4 804 29 HOH HOH . 
F 4 HOH A 5 805 28 HOH HOH . 
F 4 HOH A 6 806 95 HOH HOH . 
F 4 HOH A 7 807 10 HOH HOH . 
F 4 HOH A 8 808 168 HOH HOH . 
F 4 HOH A 9 809 165 HOH HOH . 
F 4 HOH A 10 810 92 HOH HOH . 
F 4 HOH A 11 811 60 HOH HOH . 
F 4 HOH A 12 812 18 HOH HOH . 
F 4 HOH A 13 813 31 HOH HOH . 
F 4 HOH A 14 814 1 HOH HOH . 
F 4 HOH A 15 815 124 HOH HOH . 
F 4 HOH A 16 816 114 HOH HOH . 
F 4 HOH A 17 817 48 HOH HOH . 
F 4 HOH A 18 818 45 HOH HOH . 
F 4 HOH A 19 819 41 HOH HOH . 
F 4 HOH A 20 820 200 HOH HOH . 
F 4 HOH A 21 821 54 HOH HOH . 
F 4 HOH A 22 822 35 HOH HOH . 
F 4 HOH A 23 823 36 HOH HOH . 
F 4 HOH A 24 824 104 HOH HOH . 
F 4 HOH A 25 825 3 HOH HOH . 
F 4 HOH A 26 826 83 HOH HOH . 
F 4 HOH A 27 827 49 HOH HOH . 
F 4 HOH A 28 828 23 HOH HOH . 
F 4 HOH A 29 829 136 HOH HOH . 
F 4 HOH A 30 830 55 HOH HOH . 
F 4 HOH A 31 831 110 HOH HOH . 
F 4 HOH A 32 832 30 HOH HOH . 
F 4 HOH A 33 833 80 HOH HOH . 
F 4 HOH A 34 834 6 HOH HOH . 
F 4 HOH A 35 835 86 HOH HOH . 
F 4 HOH A 36 836 70 HOH HOH . 
F 4 HOH A 37 837 81 HOH HOH . 
F 4 HOH A 38 838 96 HOH HOH . 
F 4 HOH A 39 839 14 HOH HOH . 
F 4 HOH A 40 840 113 HOH HOH . 
F 4 HOH A 41 841 32 HOH HOH . 
F 4 HOH A 42 842 44 HOH HOH . 
F 4 HOH A 43 843 38 HOH HOH . 
F 4 HOH A 44 844 77 HOH HOH . 
F 4 HOH A 45 845 75 HOH HOH . 
F 4 HOH A 46 846 24 HOH HOH . 
F 4 HOH A 47 847 133 HOH HOH . 
F 4 HOH A 48 848 22 HOH HOH . 
F 4 HOH A 49 849 170 HOH HOH . 
F 4 HOH A 50 850 58 HOH HOH . 
F 4 HOH A 51 851 17 HOH HOH . 
F 4 HOH A 52 852 100 HOH HOH . 
F 4 HOH A 53 853 84 HOH HOH . 
F 4 HOH A 54 854 8 HOH HOH . 
F 4 HOH A 55 855 64 HOH HOH . 
F 4 HOH A 56 856 116 HOH HOH . 
F 4 HOH A 57 857 103 HOH HOH . 
F 4 HOH A 58 858 71 HOH HOH . 
F 4 HOH A 59 859 27 HOH HOH . 
F 4 HOH A 60 860 109 HOH HOH . 
F 4 HOH A 61 861 46 HOH HOH . 
F 4 HOH A 62 862 91 HOH HOH . 
F 4 HOH A 63 863 9 HOH HOH . 
F 4 HOH A 64 864 97 HOH HOH . 
F 4 HOH A 65 865 94 HOH HOH . 
F 4 HOH A 66 866 127 HOH HOH . 
F 4 HOH A 67 867 39 HOH HOH . 
F 4 HOH A 68 868 88 HOH HOH . 
F 4 HOH A 69 869 53 HOH HOH . 
F 4 HOH A 70 870 131 HOH HOH . 
F 4 HOH A 71 871 79 HOH HOH . 
F 4 HOH A 72 872 56 HOH HOH . 
F 4 HOH A 73 873 140 HOH HOH . 
F 4 HOH A 74 874 76 HOH HOH . 
F 4 HOH A 75 875 137 HOH HOH . 
F 4 HOH A 76 876 185 HOH HOH . 
F 4 HOH A 77 877 59 HOH HOH . 
F 4 HOH A 78 878 62 HOH HOH . 
F 4 HOH A 79 879 69 HOH HOH . 
F 4 HOH A 80 880 82 HOH HOH . 
F 4 HOH A 81 881 118 HOH HOH . 
F 4 HOH A 82 882 156 HOH HOH . 
F 4 HOH A 83 883 210 HOH HOH . 
F 4 HOH A 84 884 241 HOH HOH . 
F 4 HOH A 85 885 218 HOH HOH . 
F 4 HOH A 86 886 208 HOH HOH . 
F 4 HOH A 87 887 106 HOH HOH . 
G 4 HOH B 1 801 203 HOH HOH . 
G 4 HOH B 2 802 68 HOH HOH . 
G 4 HOH B 3 803 20 HOH HOH . 
G 4 HOH B 4 804 5 HOH HOH . 
G 4 HOH B 5 805 111 HOH HOH . 
G 4 HOH B 6 806 63 HOH HOH . 
G 4 HOH B 7 807 4 HOH HOH . 
G 4 HOH B 8 808 52 HOH HOH . 
G 4 HOH B 9 809 19 HOH HOH . 
G 4 HOH B 10 810 199 HOH HOH . 
G 4 HOH B 11 811 7 HOH HOH . 
G 4 HOH B 12 812 181 HOH HOH . 
G 4 HOH B 13 813 89 HOH HOH . 
G 4 HOH B 14 814 15 HOH HOH . 
G 4 HOH B 15 815 183 HOH HOH . 
G 4 HOH B 16 816 13 HOH HOH . 
G 4 HOH B 17 817 216 HOH HOH . 
G 4 HOH B 18 818 173 HOH HOH . 
G 4 HOH B 19 819 34 HOH HOH . 
G 4 HOH B 20 820 101 HOH HOH . 
G 4 HOH B 21 821 108 HOH HOH . 
G 4 HOH B 22 822 112 HOH HOH . 
G 4 HOH B 23 823 211 HOH HOH . 
G 4 HOH B 24 824 47 HOH HOH . 
G 4 HOH B 25 825 122 HOH HOH . 
G 4 HOH B 26 826 26 HOH HOH . 
G 4 HOH B 27 827 132 HOH HOH . 
G 4 HOH B 28 828 61 HOH HOH . 
G 4 HOH B 29 829 43 HOH HOH . 
G 4 HOH B 30 830 115 HOH HOH . 
G 4 HOH B 31 831 90 HOH HOH . 
G 4 HOH B 32 832 51 HOH HOH . 
G 4 HOH B 33 833 21 HOH HOH . 
G 4 HOH B 34 834 12 HOH HOH . 
G 4 HOH B 35 835 50 HOH HOH . 
G 4 HOH B 36 836 85 HOH HOH . 
G 4 HOH B 37 837 65 HOH HOH . 
G 4 HOH B 38 838 129 HOH HOH . 
G 4 HOH B 39 839 11 HOH HOH . 
G 4 HOH B 40 840 87 HOH HOH . 
G 4 HOH B 41 841 98 HOH HOH . 
G 4 HOH B 42 842 236 HOH HOH . 
G 4 HOH B 43 843 224 HOH HOH . 
G 4 HOH B 44 844 37 HOH HOH . 
G 4 HOH B 45 845 135 HOH HOH . 
G 4 HOH B 46 846 40 HOH HOH . 
G 4 HOH B 47 847 33 HOH HOH . 
G 4 HOH B 48 848 74 HOH HOH . 
G 4 HOH B 49 849 105 HOH HOH . 
G 4 HOH B 50 850 107 HOH HOH . 
G 4 HOH B 51 851 180 HOH HOH . 
G 4 HOH B 52 852 78 HOH HOH . 
G 4 HOH B 53 853 240 HOH HOH . 
G 4 HOH B 54 854 197 HOH HOH . 
G 4 HOH B 55 855 162 HOH HOH . 
G 4 HOH B 56 856 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 G6Q . . . C 2 -2.621 52.697 -43.129 1 54.03 ? C1 G6Q 701 A 1 
HETATM 2 C C2 G6Q . . . C 2 -2.294 52.338 -44.595 1 49.73 ? C2 G6Q 701 A 1 
HETATM 3 C C3 G6Q . . . C 2 -2.056 50.808 -44.762 1 47.76 ? C3 G6Q 701 A 1 
HETATM 4 C C4 G6Q . . . C 2 -3.07 50.127 -45.683 1 46.43 ? C4 G6Q 701 A 1 
HETATM 5 C C5 G6Q . . . C 2 -2.667 48.698 -46.046 1 45.18 ? C5 G6Q 701 A 1 
HETATM 6 C C6 G6Q . . . C 2 -3.724 47.984 -46.86 1 45.23 ? C6 G6Q 701 A 1 
HETATM 7 O O1 G6Q . . . C 2 -2.609 53.848 -42.803 1 54.32 ? O1 G6Q 701 A 1 
HETATM 8 O O2 G6Q . . . C 2 -3.334 52.848 -45.433 1 54.29 ? O2 G6Q 701 A 1 
HETATM 9 O O3 G6Q . . . C 2 -2.038 50.126 -43.513 1 47.33 ? O3 G6Q 701 A 1 
HETATM 10 O O4 G6Q . . . C 2 -4.343 50.1 -45.047 1 47.51 ? O4 G6Q 701 A 1 
HETATM 11 O O5 G6Q . . . C 2 -1.433 48.726 -46.765 1 42.31 ? O5 G6Q 701 A 1 
HETATM 12 O O6 G6Q . . . C 2 -3.878 48.663 -48.124 1 45.19 ? O6 G6Q 701 A 1 
HETATM 13 P P G6Q . . . C 2 -5.224 48.432 -48.985 1 45.18 ? P G6Q 701 A 1 
HETATM 14 O O1P G6Q . . . C 2 -6.375 49.127 -48.338 1 43.07 ? O1P G6Q 701 A 1 
HETATM 15 O O2P G6Q . . . C 2 -4.924 48.955 -50.394 1 47.94 ? O2P G6Q 701 A 1 
HETATM 16 O O3P G6Q . . . C 2 -5.416 46.915 -49.075 1 45.17 ? O3P G6Q 701 A 1 
HETATM 17 H H1 G6Q . . . C 2 -2.854 51.886 -42.441 1 64.84 ? H1 G6Q 701 A 1 
HETATM 18 H H2 G6Q . . . C 2 -1.426 52.898 -44.94 1 59.68 ? H2 G6Q 701 A 1 
HETATM 19 H H3 G6Q . . . C 2 -1.045 50.649 -45.134 1 57.31 ? H3 G6Q 701 A 1 
HETATM 20 H H4 G6Q . . . C 2 -3.242 50.735 -46.57 1 55.72 ? H4 G6Q 701 A 1 
HETATM 21 H H5 G6Q . . . C 2 -2.391 48.127 -45.161 1 54.22 ? H5 G6Q 701 A 1 
HETATM 22 H H61 G6Q . . . C 2 -3.452 46.955 -47.089 1 54.28 ? H61 G6Q 701 A 1 
HETATM 23 H H62 G6Q . . . C 2 -4.684 47.948 -46.347 1 54.28 ? H62 G6Q 701 A 1 
HETATM 24 H HO2 G6Q . . . C 2 -3.165 53.815 -45.584 1 65.15 ? HO2 G6Q 701 A 1 
HETATM 25 H HO3 G6Q . . . C 2 -1.242 50.427 -43.001 1 56.79 ? HO3 G6Q 701 A 1 
HETATM 26 H HO4 G6Q . . . C 2 -4.991 50.593 -45.615 1 57.02 ? HO4 G6Q 701 A 1 
HETATM 27 H HO5 G6Q . . . C 2 -0.697 48.885 -46.118 1 50.77 ? HO5 G6Q 701 A 1 
HETATM 28 H HOP2 G6Q . . . C 2 -4.358 49.756 -50.547 1 57.52 ? HOP2 G6Q 701 A 1 
HETATM 29 H HOP3 G6Q . . . C 2 -5.473 46.397 -49.92 1 54.2 ? HOP3 G6Q 701 A 1 
#
_model_server_stats.io_time_ms              128 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           29 
#