data_7NDL
#
_model_server_result.job_id            PZzCyq0dqYFbvjogdMPtDA 
_model_server_result.datetime_utc      '2024-11-24 09:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ndl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    7NDL 
#
_exptl.entry_id    7NDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NDL 
_cell.length_a            153.615 
_cell.length_b            153.615 
_cell.length_c            166.132 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 241 A ASP 242 1_555 A N SEP 242 A SEP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C SEP 242 A SEP 243 1_555 A N THR 243 A THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 130 n n 
N H GLU sing 131 n n 
N H2 GLU sing 132 n n 
CA C GLU sing 133 n n 
CA CB GLU sing 134 n n 
CA HA GLU sing 135 n n 
C O GLU doub 136 n n 
C OXT GLU sing 137 n n 
CB CG GLU sing 138 n n 
CB HB2 GLU sing 139 n n 
CB HB3 GLU sing 140 n n 
CG CD GLU sing 141 n n 
CG HG2 GLU sing 142 n n 
CG HG3 GLU sing 143 n n 
CD OE1 GLU doub 144 n n 
CD OE2 GLU sing 145 n n 
OE2 HE2 GLU sing 146 n n 
OXT HXT GLU sing 147 n n 
#
_atom_sites.entry_id                     7NDL 
_atom_sites.fract_transf_matrix[1][1]    0.00651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G6Q A 1 701 1 G6Q G6Q . 
D 3 GLU A 1 702 1 GLU GLU . 
E 2 G6Q B 1 701 2 G6Q G6Q . 
F 4 HOH A 1 801 248 HOH HOH . 
F 4 HOH A 2 802 2 HOH HOH . 
F 4 HOH A 3 803 195 HOH HOH . 
F 4 HOH A 4 804 29 HOH HOH . 
F 4 HOH A 5 805 28 HOH HOH . 
F 4 HOH A 6 806 95 HOH HOH . 
F 4 HOH A 7 807 10 HOH HOH . 
F 4 HOH A 8 808 168 HOH HOH . 
F 4 HOH A 9 809 165 HOH HOH . 
F 4 HOH A 10 810 92 HOH HOH . 
F 4 HOH A 11 811 60 HOH HOH . 
F 4 HOH A 12 812 18 HOH HOH . 
F 4 HOH A 13 813 31 HOH HOH . 
F 4 HOH A 14 814 1 HOH HOH . 
F 4 HOH A 15 815 124 HOH HOH . 
F 4 HOH A 16 816 114 HOH HOH . 
F 4 HOH A 17 817 48 HOH HOH . 
F 4 HOH A 18 818 45 HOH HOH . 
F 4 HOH A 19 819 41 HOH HOH . 
F 4 HOH A 20 820 200 HOH HOH . 
F 4 HOH A 21 821 54 HOH HOH . 
F 4 HOH A 22 822 35 HOH HOH . 
F 4 HOH A 23 823 36 HOH HOH . 
F 4 HOH A 24 824 104 HOH HOH . 
F 4 HOH A 25 825 3 HOH HOH . 
F 4 HOH A 26 826 83 HOH HOH . 
F 4 HOH A 27 827 49 HOH HOH . 
F 4 HOH A 28 828 23 HOH HOH . 
F 4 HOH A 29 829 136 HOH HOH . 
F 4 HOH A 30 830 55 HOH HOH . 
F 4 HOH A 31 831 110 HOH HOH . 
F 4 HOH A 32 832 30 HOH HOH . 
F 4 HOH A 33 833 80 HOH HOH . 
F 4 HOH A 34 834 6 HOH HOH . 
F 4 HOH A 35 835 86 HOH HOH . 
F 4 HOH A 36 836 70 HOH HOH . 
F 4 HOH A 37 837 81 HOH HOH . 
F 4 HOH A 38 838 96 HOH HOH . 
F 4 HOH A 39 839 14 HOH HOH . 
F 4 HOH A 40 840 113 HOH HOH . 
F 4 HOH A 41 841 32 HOH HOH . 
F 4 HOH A 42 842 44 HOH HOH . 
F 4 HOH A 43 843 38 HOH HOH . 
F 4 HOH A 44 844 77 HOH HOH . 
F 4 HOH A 45 845 75 HOH HOH . 
F 4 HOH A 46 846 24 HOH HOH . 
F 4 HOH A 47 847 133 HOH HOH . 
F 4 HOH A 48 848 22 HOH HOH . 
F 4 HOH A 49 849 170 HOH HOH . 
F 4 HOH A 50 850 58 HOH HOH . 
F 4 HOH A 51 851 17 HOH HOH . 
F 4 HOH A 52 852 100 HOH HOH . 
F 4 HOH A 53 853 84 HOH HOH . 
F 4 HOH A 54 854 8 HOH HOH . 
F 4 HOH A 55 855 64 HOH HOH . 
F 4 HOH A 56 856 116 HOH HOH . 
F 4 HOH A 57 857 103 HOH HOH . 
F 4 HOH A 58 858 71 HOH HOH . 
F 4 HOH A 59 859 27 HOH HOH . 
F 4 HOH A 60 860 109 HOH HOH . 
F 4 HOH A 61 861 46 HOH HOH . 
F 4 HOH A 62 862 91 HOH HOH . 
F 4 HOH A 63 863 9 HOH HOH . 
F 4 HOH A 64 864 97 HOH HOH . 
F 4 HOH A 65 865 94 HOH HOH . 
F 4 HOH A 66 866 127 HOH HOH . 
F 4 HOH A 67 867 39 HOH HOH . 
F 4 HOH A 68 868 88 HOH HOH . 
F 4 HOH A 69 869 53 HOH HOH . 
F 4 HOH A 70 870 131 HOH HOH . 
F 4 HOH A 71 871 79 HOH HOH . 
F 4 HOH A 72 872 56 HOH HOH . 
F 4 HOH A 73 873 140 HOH HOH . 
F 4 HOH A 74 874 76 HOH HOH . 
F 4 HOH A 75 875 137 HOH HOH . 
F 4 HOH A 76 876 185 HOH HOH . 
F 4 HOH A 77 877 59 HOH HOH . 
F 4 HOH A 78 878 62 HOH HOH . 
F 4 HOH A 79 879 69 HOH HOH . 
F 4 HOH A 80 880 82 HOH HOH . 
F 4 HOH A 81 881 118 HOH HOH . 
F 4 HOH A 82 882 156 HOH HOH . 
F 4 HOH A 83 883 210 HOH HOH . 
F 4 HOH A 84 884 241 HOH HOH . 
F 4 HOH A 85 885 218 HOH HOH . 
F 4 HOH A 86 886 208 HOH HOH . 
F 4 HOH A 87 887 106 HOH HOH . 
G 4 HOH B 1 801 203 HOH HOH . 
G 4 HOH B 2 802 68 HOH HOH . 
G 4 HOH B 3 803 20 HOH HOH . 
G 4 HOH B 4 804 5 HOH HOH . 
G 4 HOH B 5 805 111 HOH HOH . 
G 4 HOH B 6 806 63 HOH HOH . 
G 4 HOH B 7 807 4 HOH HOH . 
G 4 HOH B 8 808 52 HOH HOH . 
G 4 HOH B 9 809 19 HOH HOH . 
G 4 HOH B 10 810 199 HOH HOH . 
G 4 HOH B 11 811 7 HOH HOH . 
G 4 HOH B 12 812 181 HOH HOH . 
G 4 HOH B 13 813 89 HOH HOH . 
G 4 HOH B 14 814 15 HOH HOH . 
G 4 HOH B 15 815 183 HOH HOH . 
G 4 HOH B 16 816 13 HOH HOH . 
G 4 HOH B 17 817 216 HOH HOH . 
G 4 HOH B 18 818 173 HOH HOH . 
G 4 HOH B 19 819 34 HOH HOH . 
G 4 HOH B 20 820 101 HOH HOH . 
G 4 HOH B 21 821 108 HOH HOH . 
G 4 HOH B 22 822 112 HOH HOH . 
G 4 HOH B 23 823 211 HOH HOH . 
G 4 HOH B 24 824 47 HOH HOH . 
G 4 HOH B 25 825 122 HOH HOH . 
G 4 HOH B 26 826 26 HOH HOH . 
G 4 HOH B 27 827 132 HOH HOH . 
G 4 HOH B 28 828 61 HOH HOH . 
G 4 HOH B 29 829 43 HOH HOH . 
G 4 HOH B 30 830 115 HOH HOH . 
G 4 HOH B 31 831 90 HOH HOH . 
G 4 HOH B 32 832 51 HOH HOH . 
G 4 HOH B 33 833 21 HOH HOH . 
G 4 HOH B 34 834 12 HOH HOH . 
G 4 HOH B 35 835 50 HOH HOH . 
G 4 HOH B 36 836 85 HOH HOH . 
G 4 HOH B 37 837 65 HOH HOH . 
G 4 HOH B 38 838 129 HOH HOH . 
G 4 HOH B 39 839 11 HOH HOH . 
G 4 HOH B 40 840 87 HOH HOH . 
G 4 HOH B 41 841 98 HOH HOH . 
G 4 HOH B 42 842 236 HOH HOH . 
G 4 HOH B 43 843 224 HOH HOH . 
G 4 HOH B 44 844 37 HOH HOH . 
G 4 HOH B 45 845 135 HOH HOH . 
G 4 HOH B 46 846 40 HOH HOH . 
G 4 HOH B 47 847 33 HOH HOH . 
G 4 HOH B 48 848 74 HOH HOH . 
G 4 HOH B 49 849 105 HOH HOH . 
G 4 HOH B 50 850 107 HOH HOH . 
G 4 HOH B 51 851 180 HOH HOH . 
G 4 HOH B 52 852 78 HOH HOH . 
G 4 HOH B 53 853 240 HOH HOH . 
G 4 HOH B 54 854 197 HOH HOH . 
G 4 HOH B 55 855 162 HOH HOH . 
G 4 HOH B 56 856 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . D 3 13.068 47.792 -61.689 1 90.53 ? N GLU 702 A 1 
HETATM 2 C CA GLU . . . D 3 13.151 49.077 -62.44 1 90.97 ? CA GLU 702 A 1 
HETATM 3 C C GLU . . . D 3 14.354 49.895 -61.982 1 88.34 ? C GLU 702 A 1 
HETATM 4 O O GLU . . . D 3 14.934 50.66 -62.753 1 84.41 ? O GLU 702 A 1 
HETATM 5 C CB GLU . . . D 3 11.864 49.887 -62.263 1 90.73 ? CB GLU 702 A 1 
HETATM 6 C CG GLU . . . D 3 11.418 50.042 -60.816 1 94.18 ? CG GLU 702 A 1 
HETATM 7 C CD GLU . . . D 3 10.193 50.928 -60.672 1 94.55 ? CD GLU 702 A 1 
HETATM 8 O OE1 GLU . . . D 3 10.246 52.098 -61.106 1 89.54 ? OE1 GLU 702 A 1 
HETATM 9 O OE2 GLU . . . D 3 9.174 50.45 -60.131 1 97.02 ? OE2 GLU 702 A 1 
HETATM 10 O OXT GLU . . . D 3 14.776 49.81 -60.829 1 87.49 ? OXT GLU 702 A 1 
HETATM 11 H H1 GLU . . . D 3 12.215 47.552 -61.606 1 90.53 ? H1 GLU 702 A 1 
HETATM 12 H H2 GLU . . . D 3 13.513 47.161 -62.131 1 90.53 ? H2 GLU 702 A 1 
HETATM 13 H H3 GLU . . . D 3 13.427 47.897 -60.881 1 90.53 ? H3 GLU 702 A 1 
HETATM 14 H HA GLU . . . D 3 13.259 48.886 -63.385 1 90.97 ? HA GLU 702 A 1 
HETATM 15 H HB2 GLU . . . D 3 12.003 50.776 -62.626 1 90.73 ? HB2 GLU 702 A 1 
HETATM 16 H HB3 GLU . . . D 3 11.149 49.444 -62.746 1 90.73 ? HB3 GLU 702 A 1 
HETATM 17 H HG2 GLU . . . D 3 11.199 49.168 -60.457 1 94.18 ? HG2 GLU 702 A 1 
HETATM 18 H HG3 GLU . . . D 3 12.139 50.441 -60.304 1 94.18 ? HG3 GLU 702 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#