data_7NDO # _model_server_result.job_id ihsnvpvW8df5Vd6RrkVyXQ _model_server_result.datetime_utc '2024-11-25 04:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ndo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":604}' # _entry.id 7NDO # _exptl.entry_id 7NDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.839 _cell.angle_beta 113.516 _cell.angle_gamma 110.417 _cell.entry_id 7NDO _cell.length_a 48.581 _cell.length_b 51.787 _cell.length_c 57.513 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7NDO _atom_sites.fract_transf_matrix[1][1] 0.020584 _atom_sites.fract_transf_matrix[1][2] 0.007662 _atom_sites.fract_transf_matrix[1][3] 0.012051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020604 _atom_sites.fract_transf_matrix[2][3] 0.006976 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RAL A 1 601 1 RAL RAL . D 3 EDO A 1 602 1 EDO EDO . E 3 EDO A 1 603 4 EDO EDO . F 3 EDO A 1 604 6 EDO EDO . G 4 CL A 1 605 1 CL CL . H 4 CL A 1 606 2 CL CL . I 4 CL A 1 607 3 CL CL . J 2 RAL B 1 601 2 RAL RAL . K 3 EDO B 1 602 2 EDO EDO . L 3 EDO B 1 603 3 EDO EDO . M 3 EDO B 1 604 5 EDO EDO . N 3 EDO B 1 605 7 EDO EDO . O 3 EDO B 1 606 8 EDO EDO . P 5 HOH A 1 701 278 HOH HOH . P 5 HOH A 2 702 286 HOH HOH . P 5 HOH A 3 703 200 HOH HOH . P 5 HOH A 4 704 263 HOH HOH . P 5 HOH A 5 705 241 HOH HOH . P 5 HOH A 6 706 85 HOH HOH . P 5 HOH A 7 707 82 HOH HOH . P 5 HOH A 8 708 56 HOH HOH . P 5 HOH A 9 709 211 HOH HOH . P 5 HOH A 10 710 220 HOH HOH . P 5 HOH A 11 711 215 HOH HOH . P 5 HOH A 12 712 64 HOH HOH . P 5 HOH A 13 713 72 HOH HOH . P 5 HOH A 14 714 146 HOH HOH . P 5 HOH A 15 715 239 HOH HOH . P 5 HOH A 16 716 152 HOH HOH . P 5 HOH A 17 717 97 HOH HOH . P 5 HOH A 18 718 150 HOH HOH . P 5 HOH A 19 719 134 HOH HOH . P 5 HOH A 20 720 70 HOH HOH . P 5 HOH A 21 721 68 HOH HOH . P 5 HOH A 22 722 266 HOH HOH . P 5 HOH A 23 723 282 HOH HOH . P 5 HOH A 24 724 157 HOH HOH . P 5 HOH A 25 725 151 HOH HOH . P 5 HOH A 26 726 222 HOH HOH . P 5 HOH A 27 727 78 HOH HOH . P 5 HOH A 28 728 137 HOH HOH . P 5 HOH A 29 729 259 HOH HOH . P 5 HOH A 30 730 192 HOH HOH . P 5 HOH A 31 731 224 HOH HOH . P 5 HOH A 32 732 198 HOH HOH . P 5 HOH A 33 733 106 HOH HOH . P 5 HOH A 34 734 248 HOH HOH . P 5 HOH A 35 735 41 HOH HOH . P 5 HOH A 36 736 22 HOH HOH . P 5 HOH A 37 737 71 HOH HOH . P 5 HOH A 38 738 2 HOH HOH . P 5 HOH A 39 739 109 HOH HOH . P 5 HOH A 40 740 119 HOH HOH . P 5 HOH A 41 741 61 HOH HOH . P 5 HOH A 42 742 47 HOH HOH . P 5 HOH A 43 743 32 HOH HOH . P 5 HOH A 44 744 20 HOH HOH . P 5 HOH A 45 745 120 HOH HOH . P 5 HOH A 46 746 160 HOH HOH . P 5 HOH A 47 747 111 HOH HOH . P 5 HOH A 48 748 214 HOH HOH . P 5 HOH A 49 749 63 HOH HOH . P 5 HOH A 50 750 177 HOH HOH . P 5 HOH A 51 751 11 HOH HOH . P 5 HOH A 52 752 21 HOH HOH . P 5 HOH A 53 753 210 HOH HOH . P 5 HOH A 54 754 176 HOH HOH . P 5 HOH A 55 755 62 HOH HOH . P 5 HOH A 56 756 124 HOH HOH . P 5 HOH A 57 757 108 HOH HOH . P 5 HOH A 58 758 16 HOH HOH . P 5 HOH A 59 759 99 HOH HOH . P 5 HOH A 60 760 35 HOH HOH . P 5 HOH A 61 761 51 HOH HOH . P 5 HOH A 62 762 45 HOH HOH . P 5 HOH A 63 763 142 HOH HOH . P 5 HOH A 64 764 131 HOH HOH . P 5 HOH A 65 765 254 HOH HOH . P 5 HOH A 66 766 13 HOH HOH . P 5 HOH A 67 767 279 HOH HOH . P 5 HOH A 68 768 262 HOH HOH . P 5 HOH A 69 769 27 HOH HOH . P 5 HOH A 70 770 258 HOH HOH . P 5 HOH A 71 771 219 HOH HOH . P 5 HOH A 72 772 184 HOH HOH . P 5 HOH A 73 773 28 HOH HOH . P 5 HOH A 74 774 88 HOH HOH . P 5 HOH A 75 775 179 HOH HOH . P 5 HOH A 76 776 19 HOH HOH . P 5 HOH A 77 777 280 HOH HOH . P 5 HOH A 78 778 206 HOH HOH . P 5 HOH A 79 779 127 HOH HOH . P 5 HOH A 80 780 145 HOH HOH . P 5 HOH A 81 781 55 HOH HOH . P 5 HOH A 82 782 26 HOH HOH . P 5 HOH A 83 783 67 HOH HOH . P 5 HOH A 84 784 75 HOH HOH . P 5 HOH A 85 785 205 HOH HOH . P 5 HOH A 86 786 171 HOH HOH . P 5 HOH A 87 787 190 HOH HOH . P 5 HOH A 88 788 196 HOH HOH . P 5 HOH A 89 789 1 HOH HOH . P 5 HOH A 90 790 87 HOH HOH . P 5 HOH A 91 791 166 HOH HOH . P 5 HOH A 92 792 237 HOH HOH . P 5 HOH A 93 793 136 HOH HOH . P 5 HOH A 94 794 272 HOH HOH . P 5 HOH A 95 795 231 HOH HOH . P 5 HOH A 96 796 204 HOH HOH . P 5 HOH A 97 797 60 HOH HOH . P 5 HOH A 98 798 240 HOH HOH . P 5 HOH A 99 799 289 HOH HOH . P 5 HOH A 100 800 194 HOH HOH . P 5 HOH A 101 801 209 HOH HOH . P 5 HOH A 102 802 260 HOH HOH . P 5 HOH A 103 803 83 HOH HOH . P 5 HOH A 104 804 178 HOH HOH . P 5 HOH A 105 805 143 HOH HOH . P 5 HOH A 106 806 233 HOH HOH . P 5 HOH A 107 807 182 HOH HOH . P 5 HOH A 108 808 129 HOH HOH . P 5 HOH A 109 809 169 HOH HOH . P 5 HOH A 110 810 261 HOH HOH . P 5 HOH A 111 811 276 HOH HOH . P 5 HOH A 112 812 269 HOH HOH . P 5 HOH A 113 813 285 HOH HOH . P 5 HOH A 114 814 148 HOH HOH . P 5 HOH A 115 815 188 HOH HOH . P 5 HOH A 116 816 174 HOH HOH . P 5 HOH A 117 817 84 HOH HOH . P 5 HOH A 118 818 252 HOH HOH . P 5 HOH A 119 819 162 HOH HOH . P 5 HOH A 120 820 4 HOH HOH . P 5 HOH A 121 821 159 HOH HOH . Q 5 HOH B 1 701 265 HOH HOH . Q 5 HOH B 2 702 253 HOH HOH . Q 5 HOH B 3 703 287 HOH HOH . Q 5 HOH B 4 704 246 HOH HOH . Q 5 HOH B 5 705 249 HOH HOH . Q 5 HOH B 6 706 230 HOH HOH . Q 5 HOH B 7 707 247 HOH HOH . Q 5 HOH B 8 708 229 HOH HOH . Q 5 HOH B 9 709 221 HOH HOH . Q 5 HOH B 10 710 154 HOH HOH . Q 5 HOH B 11 711 102 HOH HOH . Q 5 HOH B 12 712 255 HOH HOH . Q 5 HOH B 13 713 270 HOH HOH . Q 5 HOH B 14 714 53 HOH HOH . Q 5 HOH B 15 715 223 HOH HOH . Q 5 HOH B 16 716 95 HOH HOH . Q 5 HOH B 17 717 89 HOH HOH . Q 5 HOH B 18 718 39 HOH HOH . Q 5 HOH B 19 719 116 HOH HOH . Q 5 HOH B 20 720 91 HOH HOH . Q 5 HOH B 21 721 105 HOH HOH . Q 5 HOH B 22 722 40 HOH HOH . Q 5 HOH B 23 723 155 HOH HOH . Q 5 HOH B 24 724 218 HOH HOH . Q 5 HOH B 25 725 234 HOH HOH . Q 5 HOH B 26 726 103 HOH HOH . Q 5 HOH B 27 727 12 HOH HOH . Q 5 HOH B 28 728 5 HOH HOH . Q 5 HOH B 29 729 242 HOH HOH . Q 5 HOH B 30 730 147 HOH HOH . Q 5 HOH B 31 731 100 HOH HOH . Q 5 HOH B 32 732 175 HOH HOH . Q 5 HOH B 33 733 133 HOH HOH . Q 5 HOH B 34 734 123 HOH HOH . Q 5 HOH B 35 735 43 HOH HOH . Q 5 HOH B 36 736 217 HOH HOH . Q 5 HOH B 37 737 113 HOH HOH . Q 5 HOH B 38 738 125 HOH HOH . Q 5 HOH B 39 739 80 HOH HOH . Q 5 HOH B 40 740 203 HOH HOH . Q 5 HOH B 41 741 107 HOH HOH . Q 5 HOH B 42 742 96 HOH HOH . Q 5 HOH B 43 743 30 HOH HOH . Q 5 HOH B 44 744 15 HOH HOH . Q 5 HOH B 45 745 25 HOH HOH . Q 5 HOH B 46 746 77 HOH HOH . Q 5 HOH B 47 747 213 HOH HOH . Q 5 HOH B 48 748 6 HOH HOH . Q 5 HOH B 49 749 73 HOH HOH . Q 5 HOH B 50 750 114 HOH HOH . Q 5 HOH B 51 751 76 HOH HOH . Q 5 HOH B 52 752 50 HOH HOH . Q 5 HOH B 53 753 101 HOH HOH . Q 5 HOH B 54 754 226 HOH HOH . Q 5 HOH B 55 755 180 HOH HOH . Q 5 HOH B 56 756 132 HOH HOH . Q 5 HOH B 57 757 121 HOH HOH . Q 5 HOH B 58 758 86 HOH HOH . Q 5 HOH B 59 759 14 HOH HOH . Q 5 HOH B 60 760 207 HOH HOH . Q 5 HOH B 61 761 10 HOH HOH . Q 5 HOH B 62 762 31 HOH HOH . Q 5 HOH B 63 763 24 HOH HOH . Q 5 HOH B 64 764 18 HOH HOH . Q 5 HOH B 65 765 92 HOH HOH . Q 5 HOH B 66 766 49 HOH HOH . Q 5 HOH B 67 767 183 HOH HOH . Q 5 HOH B 68 768 69 HOH HOH . Q 5 HOH B 69 769 164 HOH HOH . Q 5 HOH B 70 770 74 HOH HOH . Q 5 HOH B 71 771 66 HOH HOH . Q 5 HOH B 72 772 58 HOH HOH . Q 5 HOH B 73 773 277 HOH HOH . Q 5 HOH B 74 774 8 HOH HOH . Q 5 HOH B 75 775 42 HOH HOH . Q 5 HOH B 76 776 90 HOH HOH . Q 5 HOH B 77 777 46 HOH HOH . Q 5 HOH B 78 778 199 HOH HOH . Q 5 HOH B 79 779 135 HOH HOH . Q 5 HOH B 80 780 52 HOH HOH . Q 5 HOH B 81 781 189 HOH HOH . Q 5 HOH B 82 782 34 HOH HOH . Q 5 HOH B 83 783 37 HOH HOH . Q 5 HOH B 84 784 167 HOH HOH . Q 5 HOH B 85 785 48 HOH HOH . Q 5 HOH B 86 786 187 HOH HOH . Q 5 HOH B 87 787 9 HOH HOH . Q 5 HOH B 88 788 244 HOH HOH . Q 5 HOH B 89 789 7 HOH HOH . Q 5 HOH B 90 790 93 HOH HOH . Q 5 HOH B 91 791 36 HOH HOH . Q 5 HOH B 92 792 149 HOH HOH . Q 5 HOH B 93 793 33 HOH HOH . Q 5 HOH B 94 794 225 HOH HOH . Q 5 HOH B 95 795 140 HOH HOH . Q 5 HOH B 96 796 163 HOH HOH . Q 5 HOH B 97 797 44 HOH HOH . Q 5 HOH B 98 798 122 HOH HOH . Q 5 HOH B 99 799 17 HOH HOH . Q 5 HOH B 100 800 29 HOH HOH . Q 5 HOH B 101 801 54 HOH HOH . Q 5 HOH B 102 802 59 HOH HOH . Q 5 HOH B 103 803 115 HOH HOH . Q 5 HOH B 104 804 57 HOH HOH . Q 5 HOH B 105 805 130 HOH HOH . Q 5 HOH B 106 806 236 HOH HOH . Q 5 HOH B 107 807 202 HOH HOH . Q 5 HOH B 108 808 212 HOH HOH . Q 5 HOH B 109 809 288 HOH HOH . Q 5 HOH B 110 810 79 HOH HOH . Q 5 HOH B 111 811 197 HOH HOH . Q 5 HOH B 112 812 65 HOH HOH . Q 5 HOH B 113 813 165 HOH HOH . Q 5 HOH B 114 814 94 HOH HOH . Q 5 HOH B 115 815 110 HOH HOH . Q 5 HOH B 116 816 228 HOH HOH . Q 5 HOH B 117 817 118 HOH HOH . Q 5 HOH B 118 818 268 HOH HOH . Q 5 HOH B 119 819 284 HOH HOH . Q 5 HOH B 120 820 3 HOH HOH . Q 5 HOH B 121 821 158 HOH HOH . Q 5 HOH B 122 822 81 HOH HOH . Q 5 HOH B 123 823 256 HOH HOH . Q 5 HOH B 124 824 185 HOH HOH . Q 5 HOH B 125 825 141 HOH HOH . Q 5 HOH B 126 826 173 HOH HOH . Q 5 HOH B 127 827 216 HOH HOH . Q 5 HOH B 128 828 264 HOH HOH . Q 5 HOH B 129 829 138 HOH HOH . Q 5 HOH B 130 830 153 HOH HOH . Q 5 HOH B 131 831 191 HOH HOH . Q 5 HOH B 132 832 208 HOH HOH . Q 5 HOH B 133 833 245 HOH HOH . Q 5 HOH B 134 834 38 HOH HOH . Q 5 HOH B 135 835 128 HOH HOH . Q 5 HOH B 136 836 112 HOH HOH . Q 5 HOH B 137 837 271 HOH HOH . Q 5 HOH B 138 838 251 HOH HOH . Q 5 HOH B 139 839 195 HOH HOH . Q 5 HOH B 140 840 144 HOH HOH . Q 5 HOH B 141 841 172 HOH HOH . Q 5 HOH B 142 842 139 HOH HOH . Q 5 HOH B 143 843 232 HOH HOH . Q 5 HOH B 144 844 168 HOH HOH . Q 5 HOH B 145 845 227 HOH HOH . Q 5 HOH B 146 846 117 HOH HOH . Q 5 HOH B 147 847 257 HOH HOH . Q 5 HOH B 148 848 235 HOH HOH . Q 5 HOH B 149 849 126 HOH HOH . Q 5 HOH B 150 850 201 HOH HOH . Q 5 HOH B 151 851 193 HOH HOH . Q 5 HOH B 152 852 104 HOH HOH . Q 5 HOH B 153 853 267 HOH HOH . Q 5 HOH B 154 854 181 HOH HOH . Q 5 HOH B 155 855 275 HOH HOH . Q 5 HOH B 156 856 156 HOH HOH . Q 5 HOH B 157 857 250 HOH HOH . Q 5 HOH B 158 858 98 HOH HOH . Q 5 HOH B 159 859 186 HOH HOH . Q 5 HOH B 160 860 238 HOH HOH . Q 5 HOH B 161 861 23 HOH HOH . Q 5 HOH B 162 862 170 HOH HOH . Q 5 HOH B 163 863 243 HOH HOH . Q 5 HOH B 164 864 273 HOH HOH . Q 5 HOH B 165 865 274 HOH HOH . Q 5 HOH B 166 866 283 HOH HOH . Q 5 HOH B 167 867 161 HOH HOH . Q 5 HOH B 168 868 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 3 4.987 -16.09 5.344 1 80.74 ? C1 EDO 604 B 1 HETATM 2 O O1 EDO . . . M 3 4.199 -15.98 6.534 1 80.51 ? O1 EDO 604 B 1 HETATM 3 C C2 EDO . . . M 3 4.939 -14.768 4.586 1 79.06 ? C2 EDO 604 B 1 HETATM 4 O O2 EDO . . . M 3 5.563 -14.916 3.305 1 74.43 ? O2 EDO 604 B 1 HETATM 5 H H11 EDO . . . M 3 6.02 -16.333 5.603 1 96.9 ? H11 EDO 604 B 1 HETATM 6 H H12 EDO . . . M 3 4.601 -16.894 4.715 1 96.9 ? H12 EDO 604 B 1 HETATM 7 H HO1 EDO . . . M 3 4.213 -16.822 7.009 1 96.61 ? HO1 EDO 604 B 1 HETATM 8 H H21 EDO . . . M 3 5.454 -13.994 5.159 1 94.88 ? H21 EDO 604 B 1 HETATM 9 H H22 EDO . . . M 3 3.901 -14.455 4.456 1 94.88 ? H22 EDO 604 B 1 HETATM 10 H HO2 EDO . . . M 3 5.395 -14.128 2.771 1 89.33 ? HO2 EDO 604 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #