data_7NDW # _model_server_result.job_id s089rATvefBPRRmVyinFnQ _model_server_result.datetime_utc '2025-03-31 07:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ndw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 7NDW # _exptl.entry_id 7NDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NDW _cell.length_a 54.96 _cell.length_b 116.78 _cell.length_c 141.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 O N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 494 n n P O2 PO4 sing 495 n n P O3 PO4 sing 496 n n P O4 PO4 sing 497 n n # _atom_sites.entry_id 7NDW _atom_sites.fract_transf_matrix[1][1] 0.018195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HUF A 1 301 2 HUF FAC . F 3 PEG A 1 302 4 PEG PEG . G 2 HUF B 1 301 1 HUF FAC . H 4 PO4 B 1 302 3 PO4 PO4 . I 3 PEG B 1 303 3 PEG PEG . J 3 PEG B 1 304 6 PEG PEG . K 5 FDA C 1 301 2 FDA FDA . L 4 PO4 C 1 302 1 PO4 PO4 . M 6 PG4 C 1 303 1 PG4 PG4 . N 5 FDA D 1 301 1 FDA FDA . O 4 PO4 D 1 302 2 PO4 PO4 . P 3 PEG D 1 303 1 PEG PEG . Q 3 PEG D 1 304 2 PEG PEG . R 3 PEG D 1 305 5 PEG PEG . S 3 PEG D 1 306 7 PEG PEG . T 7 HOH A 1 401 18 HOH HOH . T 7 HOH A 2 402 135 HOH HOH . T 7 HOH A 3 403 57 HOH HOH . T 7 HOH A 4 404 99 HOH HOH . T 7 HOH A 5 405 92 HOH HOH . T 7 HOH A 6 406 4 HOH HOH . T 7 HOH A 7 407 105 HOH HOH . T 7 HOH A 8 408 120 HOH HOH . T 7 HOH A 9 409 5 HOH HOH . T 7 HOH A 10 410 12 HOH HOH . T 7 HOH A 11 411 60 HOH HOH . T 7 HOH A 12 412 22 HOH HOH . T 7 HOH A 13 413 34 HOH HOH . T 7 HOH A 14 414 144 HOH HOH . T 7 HOH A 15 415 75 HOH HOH . T 7 HOH A 16 416 98 HOH HOH . T 7 HOH A 17 417 52 HOH HOH . T 7 HOH A 18 418 123 HOH HOH . T 7 HOH A 19 419 59 HOH HOH . T 7 HOH A 20 420 23 HOH HOH . T 7 HOH A 21 421 53 HOH HOH . T 7 HOH A 22 422 76 HOH HOH . T 7 HOH A 23 423 44 HOH HOH . T 7 HOH A 24 424 141 HOH HOH . T 7 HOH A 25 425 112 HOH HOH . T 7 HOH A 26 426 140 HOH HOH . T 7 HOH A 27 427 102 HOH HOH . T 7 HOH A 28 428 80 HOH HOH . T 7 HOH A 29 429 134 HOH HOH . T 7 HOH A 30 430 150 HOH HOH . T 7 HOH A 31 431 30 HOH HOH . U 7 HOH B 1 401 50 HOH HOH . U 7 HOH B 2 402 37 HOH HOH . U 7 HOH B 3 403 108 HOH HOH . U 7 HOH B 4 404 107 HOH HOH . U 7 HOH B 5 405 65 HOH HOH . U 7 HOH B 6 406 109 HOH HOH . U 7 HOH B 7 407 19 HOH HOH . U 7 HOH B 8 408 74 HOH HOH . U 7 HOH B 9 409 115 HOH HOH . U 7 HOH B 10 410 10 HOH HOH . U 7 HOH B 11 411 121 HOH HOH . U 7 HOH B 12 412 11 HOH HOH . U 7 HOH B 13 413 14 HOH HOH . U 7 HOH B 14 414 114 HOH HOH . U 7 HOH B 15 415 9 HOH HOH . U 7 HOH B 16 416 95 HOH HOH . U 7 HOH B 17 417 77 HOH HOH . U 7 HOH B 18 418 81 HOH HOH . U 7 HOH B 19 419 162 HOH HOH . U 7 HOH B 20 420 40 HOH HOH . U 7 HOH B 21 421 89 HOH HOH . U 7 HOH B 22 422 56 HOH HOH . U 7 HOH B 23 423 32 HOH HOH . U 7 HOH B 24 424 64 HOH HOH . U 7 HOH B 25 425 41 HOH HOH . U 7 HOH B 26 426 20 HOH HOH . U 7 HOH B 27 427 48 HOH HOH . U 7 HOH B 28 428 85 HOH HOH . U 7 HOH B 29 429 119 HOH HOH . U 7 HOH B 30 430 145 HOH HOH . U 7 HOH B 31 431 147 HOH HOH . U 7 HOH B 32 432 122 HOH HOH . V 7 HOH C 1 401 86 HOH HOH . V 7 HOH C 2 402 46 HOH HOH . V 7 HOH C 3 403 24 HOH HOH . V 7 HOH C 4 404 51 HOH HOH . V 7 HOH C 5 405 17 HOH HOH . V 7 HOH C 6 406 35 HOH HOH . V 7 HOH C 7 407 97 HOH HOH . V 7 HOH C 8 408 103 HOH HOH . V 7 HOH C 9 409 45 HOH HOH . V 7 HOH C 10 410 61 HOH HOH . V 7 HOH C 11 411 83 HOH HOH . V 7 HOH C 12 412 29 HOH HOH . V 7 HOH C 13 413 58 HOH HOH . V 7 HOH C 14 414 79 HOH HOH . V 7 HOH C 15 415 21 HOH HOH . V 7 HOH C 16 416 91 HOH HOH . V 7 HOH C 17 417 31 HOH HOH . V 7 HOH C 18 418 68 HOH HOH . V 7 HOH C 19 419 39 HOH HOH . V 7 HOH C 20 420 110 HOH HOH . V 7 HOH C 21 421 33 HOH HOH . V 7 HOH C 22 422 118 HOH HOH . V 7 HOH C 23 423 36 HOH HOH . V 7 HOH C 24 424 126 HOH HOH . V 7 HOH C 25 425 124 HOH HOH . V 7 HOH C 26 426 164 HOH HOH . V 7 HOH C 27 427 38 HOH HOH . V 7 HOH C 28 428 26 HOH HOH . V 7 HOH C 29 429 137 HOH HOH . V 7 HOH C 30 430 72 HOH HOH . V 7 HOH C 31 431 152 HOH HOH . V 7 HOH C 32 432 125 HOH HOH . V 7 HOH C 33 433 78 HOH HOH . V 7 HOH C 34 434 116 HOH HOH . V 7 HOH C 35 435 160 HOH HOH . V 7 HOH C 36 436 129 HOH HOH . V 7 HOH C 37 437 127 HOH HOH . V 7 HOH C 38 438 148 HOH HOH . V 7 HOH C 39 439 151 HOH HOH . V 7 HOH C 40 440 87 HOH HOH . V 7 HOH C 41 441 159 HOH HOH . V 7 HOH C 42 442 117 HOH HOH . V 7 HOH C 43 443 161 HOH HOH . V 7 HOH C 44 444 111 HOH HOH . V 7 HOH C 45 445 157 HOH HOH . V 7 HOH C 46 446 93 HOH HOH . W 7 HOH D 1 401 2 HOH HOH . W 7 HOH D 2 402 67 HOH HOH . W 7 HOH D 3 403 73 HOH HOH . W 7 HOH D 4 404 128 HOH HOH . W 7 HOH D 5 405 70 HOH HOH . W 7 HOH D 6 406 82 HOH HOH . W 7 HOH D 7 407 25 HOH HOH . W 7 HOH D 8 408 63 HOH HOH . W 7 HOH D 9 409 27 HOH HOH . W 7 HOH D 10 410 6 HOH HOH . W 7 HOH D 11 411 49 HOH HOH . W 7 HOH D 12 412 16 HOH HOH . W 7 HOH D 13 413 7 HOH HOH . W 7 HOH D 14 414 96 HOH HOH . W 7 HOH D 15 415 42 HOH HOH . W 7 HOH D 16 416 146 HOH HOH . W 7 HOH D 17 417 90 HOH HOH . W 7 HOH D 18 418 153 HOH HOH . W 7 HOH D 19 419 71 HOH HOH . W 7 HOH D 20 420 1 HOH HOH . W 7 HOH D 21 421 55 HOH HOH . W 7 HOH D 22 422 106 HOH HOH . W 7 HOH D 23 423 54 HOH HOH . W 7 HOH D 24 424 158 HOH HOH . W 7 HOH D 25 425 88 HOH HOH . W 7 HOH D 26 426 3 HOH HOH . W 7 HOH D 27 427 142 HOH HOH . W 7 HOH D 28 428 130 HOH HOH . W 7 HOH D 29 429 62 HOH HOH . W 7 HOH D 30 430 154 HOH HOH . W 7 HOH D 31 431 113 HOH HOH . W 7 HOH D 32 432 136 HOH HOH . W 7 HOH D 33 433 131 HOH HOH . W 7 HOH D 34 434 132 HOH HOH . W 7 HOH D 35 435 149 HOH HOH . W 7 HOH D 36 436 138 HOH HOH . W 7 HOH D 37 437 66 HOH HOH . W 7 HOH D 38 438 163 HOH HOH . W 7 HOH D 39 439 165 HOH HOH . W 7 HOH D 40 440 84 HOH HOH . W 7 HOH D 41 441 43 HOH HOH . W 7 HOH D 42 442 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 4 11.823 -27.746 42.704 0.8 72.05 ? P PO4 302 B 1 HETATM 2 O O1 PO4 . . . H 4 11.346 -28.23 41.255 0.8 70.57 ? O1 PO4 302 B 1 HETATM 3 O O2 PO4 . . . H 4 12.718 -26.505 42.581 0.8 75.87 ? O2 PO4 302 B 1 HETATM 4 O O3 PO4 . . . H 4 12.675 -28.892 43.422 0.8 73.7 ? O3 PO4 302 B 1 HETATM 5 O O4 PO4 . . . H 4 10.537 -27.403 43.586 0.8 72.33 ? O4 PO4 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #