data_7NDY # _model_server_result.job_id hRmODDkoeJP7mTEwzPBGNw _model_server_result.datetime_utc '2025-08-31 01:35:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ndy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 7NDY # _exptl.entry_id 7NDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.51 _cell.angle_beta 69.68 _cell.angle_gamma 85.03 _cell.entry_id 7NDY _cell.length_a 33.05 _cell.length_b 40.628 _cell.length_c 43.224 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 2 A THR 2 1_555 A N TPO 3 A TPO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 A C TPO 3 A TPO 3 1_555 A N SEP 4 A SEP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C SEP 4 A SEP 4 1_555 A N GLN 5 A GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C THR 2 B THR 2 1_555 B N TPO 3 B TPO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C TPO 3 B TPO 3 1_555 B N SEP 4 B SEP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale6 B C SEP 4 B SEP 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 7NDY _atom_sites.fract_transf_matrix[1][1] 0.030257 _atom_sites.fract_transf_matrix[1][2] -0.002631 _atom_sites.fract_transf_matrix[1][3] -0.010967 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024706 _atom_sites.fract_transf_matrix[2][3] -0.009006 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 EPE B 1 101 101 EPE EPE . E 4 HOH A 1 101 155 HOH HOH . E 4 HOH A 2 102 212 HOH HOH . E 4 HOH A 3 103 150 HOH HOH . E 4 HOH A 4 104 72 HOH HOH . E 4 HOH A 5 105 157 HOH HOH . E 4 HOH A 6 106 158 HOH HOH . E 4 HOH A 7 107 3 HOH HOH . E 4 HOH A 8 108 76 HOH HOH . E 4 HOH A 9 109 139 HOH HOH . E 4 HOH A 10 110 28 HOH HOH . E 4 HOH A 11 111 14 HOH HOH . E 4 HOH A 12 112 30 HOH HOH . E 4 HOH A 13 113 42 HOH HOH . E 4 HOH A 14 114 29 HOH HOH . E 4 HOH A 15 115 86 HOH HOH . E 4 HOH A 16 116 161 HOH HOH . E 4 HOH A 17 117 189 HOH HOH . E 4 HOH A 18 118 215 HOH HOH . E 4 HOH A 19 119 196 HOH HOH . E 4 HOH A 20 120 48 HOH HOH . E 4 HOH A 21 121 58 HOH HOH . E 4 HOH A 22 122 22 HOH HOH . E 4 HOH A 23 123 169 HOH HOH . E 4 HOH A 24 124 163 HOH HOH . E 4 HOH A 25 125 143 HOH HOH . E 4 HOH A 26 126 91 HOH HOH . E 4 HOH A 27 127 34 HOH HOH . E 4 HOH A 28 128 208 HOH HOH . E 4 HOH A 29 129 56 HOH HOH . E 4 HOH A 30 130 49 HOH HOH . E 4 HOH A 31 131 1 HOH HOH . E 4 HOH A 32 132 213 HOH HOH . E 4 HOH A 33 133 16 HOH HOH . E 4 HOH A 34 134 81 HOH HOH . E 4 HOH A 35 135 93 HOH HOH . E 4 HOH A 36 136 11 HOH HOH . E 4 HOH A 37 137 90 HOH HOH . E 4 HOH A 38 138 106 HOH HOH . E 4 HOH A 39 139 71 HOH HOH . E 4 HOH A 40 140 68 HOH HOH . E 4 HOH A 41 141 156 HOH HOH . E 4 HOH A 42 142 108 HOH HOH . E 4 HOH A 43 143 127 HOH HOH . E 4 HOH A 44 144 43 HOH HOH . E 4 HOH A 45 145 109 HOH HOH . E 4 HOH A 46 146 77 HOH HOH . E 4 HOH A 47 147 40 HOH HOH . E 4 HOH A 48 148 140 HOH HOH . E 4 HOH A 49 149 191 HOH HOH . E 4 HOH A 50 150 92 HOH HOH . E 4 HOH A 51 151 33 HOH HOH . E 4 HOH A 52 152 125 HOH HOH . E 4 HOH A 53 153 192 HOH HOH . E 4 HOH A 54 154 78 HOH HOH . E 4 HOH A 55 155 54 HOH HOH . E 4 HOH A 56 156 190 HOH HOH . E 4 HOH A 57 157 121 HOH HOH . E 4 HOH A 58 158 188 HOH HOH . E 4 HOH A 59 159 74 HOH HOH . E 4 HOH A 60 160 80 HOH HOH . E 4 HOH A 61 161 149 HOH HOH . E 4 HOH A 62 162 88 HOH HOH . E 4 HOH A 63 163 209 HOH HOH . E 4 HOH A 64 164 211 HOH HOH . E 4 HOH A 65 165 148 HOH HOH . E 4 HOH A 66 166 152 HOH HOH . E 4 HOH A 67 167 66 HOH HOH . E 4 HOH A 68 168 195 HOH HOH . E 4 HOH A 69 169 214 HOH HOH . E 4 HOH A 70 170 146 HOH HOH . E 4 HOH A 71 171 112 HOH HOH . E 4 HOH A 72 172 147 HOH HOH . E 4 HOH A 73 173 141 HOH HOH . E 4 HOH A 74 174 165 HOH HOH . E 4 HOH A 75 175 126 HOH HOH . E 4 HOH A 76 176 159 HOH HOH . E 4 HOH A 77 177 164 HOH HOH . E 4 HOH A 78 178 142 HOH HOH . E 4 HOH A 79 179 137 HOH HOH . E 4 HOH A 80 180 216 HOH HOH . E 4 HOH A 81 181 128 HOH HOH . F 4 HOH B 1 201 174 HOH HOH . F 4 HOH B 2 202 32 HOH HOH . F 4 HOH B 3 203 101 HOH HOH . F 4 HOH B 4 204 217 HOH HOH . F 4 HOH B 5 205 97 HOH HOH . F 4 HOH B 6 206 25 HOH HOH . F 4 HOH B 7 207 124 HOH HOH . F 4 HOH B 8 208 9 HOH HOH . F 4 HOH B 9 209 17 HOH HOH . F 4 HOH B 10 210 5 HOH HOH . F 4 HOH B 11 211 181 HOH HOH . F 4 HOH B 12 212 21 HOH HOH . F 4 HOH B 13 213 36 HOH HOH . F 4 HOH B 14 214 2 HOH HOH . F 4 HOH B 15 215 115 HOH HOH . F 4 HOH B 16 216 179 HOH HOH . F 4 HOH B 17 217 23 HOH HOH . F 4 HOH B 18 218 83 HOH HOH . F 4 HOH B 19 219 50 HOH HOH . F 4 HOH B 20 220 27 HOH HOH . F 4 HOH B 21 221 60 HOH HOH . F 4 HOH B 22 222 67 HOH HOH . F 4 HOH B 23 223 65 HOH HOH . F 4 HOH B 24 224 132 HOH HOH . F 4 HOH B 25 225 12 HOH HOH . F 4 HOH B 26 226 79 HOH HOH . F 4 HOH B 27 227 35 HOH HOH . F 4 HOH B 28 228 39 HOH HOH . F 4 HOH B 29 229 162 HOH HOH . F 4 HOH B 30 230 201 HOH HOH . F 4 HOH B 31 231 82 HOH HOH . F 4 HOH B 32 232 52 HOH HOH . F 4 HOH B 33 233 96 HOH HOH . F 4 HOH B 34 234 64 HOH HOH . F 4 HOH B 35 235 129 HOH HOH . F 4 HOH B 36 236 20 HOH HOH . F 4 HOH B 37 237 38 HOH HOH . F 4 HOH B 38 238 104 HOH HOH . F 4 HOH B 39 239 197 HOH HOH . F 4 HOH B 40 240 75 HOH HOH . F 4 HOH B 41 241 84 HOH HOH . F 4 HOH B 42 242 120 HOH HOH . F 4 HOH B 43 243 55 HOH HOH . F 4 HOH B 44 244 205 HOH HOH . F 4 HOH B 45 245 103 HOH HOH . F 4 HOH B 46 246 118 HOH HOH . F 4 HOH B 47 247 13 HOH HOH . F 4 HOH B 48 248 203 HOH HOH . F 4 HOH B 49 249 175 HOH HOH . F 4 HOH B 50 250 61 HOH HOH . F 4 HOH B 51 251 62 HOH HOH . F 4 HOH B 52 252 113 HOH HOH . F 4 HOH B 53 253 122 HOH HOH . F 4 HOH B 54 254 46 HOH HOH . F 4 HOH B 55 255 130 HOH HOH . F 4 HOH B 56 256 73 HOH HOH . F 4 HOH B 57 257 41 HOH HOH . F 4 HOH B 58 258 44 HOH HOH . F 4 HOH B 59 259 100 HOH HOH . F 4 HOH B 60 260 59 HOH HOH . F 4 HOH B 61 261 57 HOH HOH . F 4 HOH B 62 262 105 HOH HOH . F 4 HOH B 63 263 98 HOH HOH . F 4 HOH B 64 264 31 HOH HOH . F 4 HOH B 65 265 194 HOH HOH . F 4 HOH B 66 266 15 HOH HOH . F 4 HOH B 67 267 207 HOH HOH . F 4 HOH B 68 268 102 HOH HOH . F 4 HOH B 69 269 51 HOH HOH . F 4 HOH B 70 270 85 HOH HOH . F 4 HOH B 71 271 18 HOH HOH . F 4 HOH B 72 272 170 HOH HOH . F 4 HOH B 73 273 119 HOH HOH . F 4 HOH B 74 274 172 HOH HOH . F 4 HOH B 75 275 133 HOH HOH . F 4 HOH B 76 276 145 HOH HOH . F 4 HOH B 77 277 180 HOH HOH . F 4 HOH B 78 278 131 HOH HOH . F 4 HOH B 79 279 182 HOH HOH . F 4 HOH B 80 280 166 HOH HOH . F 4 HOH B 81 281 173 HOH HOH . F 4 HOH B 82 282 218 HOH HOH . F 4 HOH B 83 283 171 HOH HOH . F 4 HOH B 84 284 167 HOH HOH . F 4 HOH B 85 285 184 HOH HOH . G 4 HOH G 1 201 111 HOH HOH . G 4 HOH G 2 202 154 HOH HOH . G 4 HOH G 3 203 204 HOH HOH . G 4 HOH G 4 204 87 HOH HOH . G 4 HOH G 5 205 168 HOH HOH . G 4 HOH G 6 206 123 HOH HOH . G 4 HOH G 7 207 45 HOH HOH . G 4 HOH G 8 208 6 HOH HOH . G 4 HOH G 9 209 26 HOH HOH . G 4 HOH G 10 210 8 HOH HOH . G 4 HOH G 11 211 24 HOH HOH . G 4 HOH G 12 212 200 HOH HOH . G 4 HOH G 13 213 114 HOH HOH . G 4 HOH G 14 214 47 HOH HOH . G 4 HOH G 15 215 138 HOH HOH . G 4 HOH G 16 216 69 HOH HOH . G 4 HOH G 17 217 19 HOH HOH . G 4 HOH G 18 218 4 HOH HOH . G 4 HOH G 19 219 94 HOH HOH . G 4 HOH G 20 220 10 HOH HOH . G 4 HOH G 21 221 37 HOH HOH . G 4 HOH G 22 222 153 HOH HOH . G 4 HOH G 23 223 70 HOH HOH . G 4 HOH G 24 224 193 HOH HOH . G 4 HOH G 25 225 89 HOH HOH . G 4 HOH G 26 226 63 HOH HOH . G 4 HOH G 27 227 7 HOH HOH . G 4 HOH G 28 228 116 HOH HOH . G 4 HOH G 29 229 110 HOH HOH . G 4 HOH G 30 230 107 HOH HOH . G 4 HOH G 31 231 99 HOH HOH . G 4 HOH G 32 232 176 HOH HOH . G 4 HOH G 33 233 135 HOH HOH . G 4 HOH G 34 234 202 HOH HOH . G 4 HOH G 35 235 177 HOH HOH . G 4 HOH G 36 236 160 HOH HOH . G 4 HOH G 37 237 185 HOH HOH . G 4 HOH G 38 238 186 HOH HOH . G 4 HOH G 39 239 151 HOH HOH . G 4 HOH G 40 240 183 HOH HOH . G 4 HOH G 41 241 136 HOH HOH . G 4 HOH G 42 242 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 3 22.044 -7.375 -20.873 1 20.12 ? N1 EPE 101 B 1 HETATM 2 C C2 EPE . . . D 3 21.92 -7.678 -22.311 1 19.88 ? C2 EPE 101 B 1 HETATM 3 C C3 EPE . . . D 3 20.473 -7.573 -22.767 1 20.17 ? C3 EPE 101 B 1 HETATM 4 N N4 EPE . . . D 3 19.619 -8.489 -21.996 1 20.12 ? N4 EPE 101 B 1 HETATM 5 C C5 EPE . . . D 3 19.707 -8.135 -20.574 1 19.98 ? C5 EPE 101 B 1 HETATM 6 C C6 EPE . . . D 3 21.15 -8.249 -20.083 1 19.55 ? C6 EPE 101 B 1 HETATM 7 C C7 EPE . . . D 3 18.226 -8.469 -22.475 1 20.39 ? C7 EPE 101 B 1 HETATM 8 C C8 EPE . . . D 3 18.069 -8.941 -23.918 1 20.58 ? C8 EPE 101 B 1 HETATM 9 O O8 EPE . . . D 3 18.69 -10.203 -24.105 1 20.66 ? O8 EPE 101 B 1 HETATM 10 C C9 EPE . . . D 3 23.445 -7.53 -20.452 1 20.75 ? C9 EPE 101 B 1 HETATM 11 C C10 EPE . . . D 3 23.718 -7.086 -19.024 1 20.97 ? C10 EPE 101 B 1 HETATM 12 S S EPE . . . D 3 23.636 -5.403 -18.813 1 21.7 ? S EPE 101 B 1 HETATM 13 O O1S EPE . . . D 3 24.175 -4.79 -20.014 1 21.51 ? O1S EPE 101 B 1 HETATM 14 O O2S EPE . . . D 3 22.215 -5.105 -18.636 1 20.99 ? O2S EPE 101 B 1 HETATM 15 O O3S EPE . . . D 3 24.412 -5.104 -17.628 1 22.22 ? O3S EPE 101 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #