data_7NDZ
#
_model_server_result.job_id            -IYAsekaA5bKtOaUQYtUNg 
_model_server_result.datetime_utc      '2024-10-19 22:37:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ndz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    7NDZ 
#
_exptl.entry_id    7NDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.566 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NDZ 
_cell.length_a            55.08 
_cell.length_b            117.56 
_cell.length_c            142.19 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H35 N9 O15 P2' 
_chem_comp.formula_weight    787.566 
_chem_comp.id                FDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FDA doub 83 n n 
PA O2A FDA sing 84 n n 
PA O5B FDA sing 85 n n 
PA O3P FDA sing 86 n n 
O2A HOA2 FDA sing 87 n n 
O5B C5B FDA sing 88 n n 
C5B C4B FDA sing 89 n n 
C5B H51A FDA sing 90 n n 
C5B H52A FDA sing 91 n n 
C4B O4B FDA sing 92 n n 
C4B C3B FDA sing 93 n n 
C4B H4B FDA sing 94 n n 
O4B C1B FDA sing 95 n n 
C3B O3B FDA sing 96 n n 
C3B C2B FDA sing 97 n n 
C3B H3B FDA sing 98 n n 
O3B HO3A FDA sing 99 n n 
C2B O2B FDA sing 100 n n 
C2B C1B FDA sing 101 n n 
C2B H2B FDA sing 102 n n 
O2B HO2A FDA sing 103 n n 
C1B N9A FDA sing 104 n n 
C1B H1B FDA sing 105 n n 
N9A C8A FDA sing 106 n y 
N9A C4A FDA sing 107 n y 
C8A N7A FDA doub 108 n y 
C8A H8A FDA sing 109 n n 
N7A C5A FDA sing 110 n y 
C5A C6A FDA sing 111 n y 
C5A C4A FDA doub 112 n y 
C6A N6A FDA sing 113 n n 
C6A N1A FDA doub 114 n y 
N6A H61A FDA sing 115 n n 
N6A H62A FDA sing 116 n n 
N1A C2A FDA sing 117 n y 
C2A N3A FDA doub 118 n y 
C2A H2A FDA sing 119 n n 
N3A C4A FDA sing 120 n y 
N1 C2 FDA sing 121 n n 
N1 C10 FDA sing 122 n n 
N1 HN1 FDA sing 123 n n 
C2 O2 FDA doub 124 n n 
C2 N3 FDA sing 125 n n 
N3 C4 FDA sing 126 n n 
N3 HN3 FDA sing 127 n n 
C4 O4 FDA doub 128 n n 
C4 C4X FDA sing 129 n n 
C4X N5 FDA sing 130 n n 
C4X C10 FDA doub 131 n n 
N5 C5X FDA sing 132 n n 
N5 HN5 FDA sing 133 n n 
C5X C6 FDA doub 134 n y 
C5X C9A FDA sing 135 n y 
C6 C7 FDA sing 136 n y 
C6 H6 FDA sing 137 n n 
C7 C7M FDA sing 138 n n 
C7 C8 FDA doub 139 n y 
C7M HM71 FDA sing 140 n n 
C7M HM72 FDA sing 141 n n 
C7M HM73 FDA sing 142 n n 
C8 C8M FDA sing 143 n n 
C8 C9 FDA sing 144 n y 
C8M HM81 FDA sing 145 n n 
C8M HM82 FDA sing 146 n n 
C8M HM83 FDA sing 147 n n 
C9 C9A FDA doub 148 n y 
C9 H9 FDA sing 149 n n 
C9A N10 FDA sing 150 n n 
N10 C10 FDA sing 151 n n 
N10 C1' FDA sing 152 n n 
C1' C2' FDA sing 153 n n 
C1' "H1'1" FDA sing 154 n n 
C1' "H1'2" FDA sing 155 n n 
C2' O2' FDA sing 156 n n 
C2' C3' FDA sing 157 n n 
C2' H2' FDA sing 158 n n 
O2' HO2' FDA sing 159 n n 
C3' O3' FDA sing 160 n n 
C3' C4' FDA sing 161 n n 
C3' H3' FDA sing 162 n n 
O3' HO3' FDA sing 163 n n 
C4' O4' FDA sing 164 n n 
C4' C5' FDA sing 165 n n 
C4' H4' FDA sing 166 n n 
O4' HO4' FDA sing 167 n n 
C5' O5' FDA sing 168 n n 
C5' "H5'1" FDA sing 169 n n 
C5' "H5'2" FDA sing 170 n n 
O5' P FDA sing 171 n n 
P O1P FDA doub 172 n n 
P O2P FDA sing 173 n n 
P O3P FDA sing 174 n n 
O2P HOP2 FDA sing 175 n n 
#
_atom_sites.entry_id                     7NDZ 
_atom_sites.fract_transf_matrix[1][1]    0.018155 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PGE A 1 301 301 PGE PGE . 
F 3 HUF A 1 302 2 HUF FAC . 
G 4 FDA B 1 301 1 FDA FDA . 
H 3 HUF C 1 301 3 HUF FAC . 
I 5 PEG C 1 302 2 PEG PEG . 
J 3 HUF D 1 301 4 HUF FAC . 
K 5 PEG D 1 302 1 PEG PEG . 
L 6 HOH A 1 401 26 HOH HOH . 
L 6 HOH A 2 402 5 HOH HOH . 
L 6 HOH A 3 403 1 HOH HOH . 
L 6 HOH A 4 404 6 HOH HOH . 
L 6 HOH A 5 405 16 HOH HOH . 
L 6 HOH A 6 406 8 HOH HOH . 
M 6 HOH B 1 401 27 HOH HOH . 
M 6 HOH B 2 402 21 HOH HOH . 
M 6 HOH B 3 403 22 HOH HOH . 
M 6 HOH B 4 404 31 HOH HOH . 
M 6 HOH B 5 405 3 HOH HOH . 
M 6 HOH B 6 406 24 HOH HOH . 
M 6 HOH B 7 407 40 HOH HOH . 
M 6 HOH B 8 408 11 HOH HOH . 
M 6 HOH B 9 409 20 HOH HOH . 
M 6 HOH B 10 410 29 HOH HOH . 
N 6 HOH C 1 401 12 HOH HOH . 
N 6 HOH C 2 402 39 HOH HOH . 
N 6 HOH C 3 403 17 HOH HOH . 
N 6 HOH C 4 404 33 HOH HOH . 
N 6 HOH C 5 405 23 HOH HOH . 
N 6 HOH C 6 406 13 HOH HOH . 
N 6 HOH C 7 407 37 HOH HOH . 
N 6 HOH C 8 408 32 HOH HOH . 
N 6 HOH C 9 409 38 HOH HOH . 
O 6 HOH D 1 401 10 HOH HOH . 
O 6 HOH D 2 402 35 HOH HOH . 
O 6 HOH D 3 403 34 HOH HOH . 
O 6 HOH D 4 404 30 HOH HOH . 
O 6 HOH D 5 405 4 HOH HOH . 
O 6 HOH D 6 406 9 HOH HOH . 
O 6 HOH D 7 407 7 HOH HOH . 
O 6 HOH D 8 408 18 HOH HOH . 
O 6 HOH D 9 409 19 HOH HOH . 
O 6 HOH D 10 410 14 HOH HOH . 
O 6 HOH D 11 411 2 HOH HOH . 
O 6 HOH D 12 412 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDA . . . G 4 -1.323 17.52 -31.888 0.9 56.02 ? PA FDA 301 B 1 
HETATM 2 O O1A FDA . . . G 4 -2.449 17.161 -32.782 0.9 54.88 ? O1A FDA 301 B 1 
HETATM 3 O O2A FDA . . . G 4 -1.5 18.921 -31.308 0.9 54.76 ? O2A FDA 301 B 1 
HETATM 4 O O5B FDA . . . G 4 -1.162 16.517 -30.638 0.9 55.98 ? O5B FDA 301 B 1 
HETATM 5 C C5B FDA . . . G 4 -0.054 16.667 -29.726 0.9 54.54 ? C5B FDA 301 B 1 
HETATM 6 C C4B FDA . . . G 4 0.268 15.307 -29.156 0.9 53.56 ? C4B FDA 301 B 1 
HETATM 7 O O4B FDA . . . G 4 -0.948 14.683 -28.695 0.9 51.96 ? O4B FDA 301 B 1 
HETATM 8 C C3B FDA . . . G 4 0.897 14.324 -30.139 0.9 52.53 ? C3B FDA 301 B 1 
HETATM 9 O O3B FDA . . . G 4 2.319 14.43 -30.118 0.9 51.95 ? O3B FDA 301 B 1 
HETATM 10 C C2B FDA . . . G 4 0.422 12.966 -29.625 0.9 51.52 ? C2B FDA 301 B 1 
HETATM 11 O O2B FDA . . . G 4 1.315 12.432 -28.654 0.9 52.38 ? O2B FDA 301 B 1 
HETATM 12 C C1B FDA . . . G 4 -0.934 13.299 -28.991 0.9 51.9 ? C1B FDA 301 B 1 
HETATM 13 N N9A FDA . . . G 4 -2.123 12.961 -29.771 0.9 51.26 ? N9A FDA 301 B 1 
HETATM 14 C C8A FDA . . . G 4 -3.141 13.814 -30.116 0.9 50.32 ? C8A FDA 301 B 1 
HETATM 15 N N7A FDA . . . G 4 -4.189 13.219 -30.629 0.9 52.4 ? N7A FDA 301 B 1 
HETATM 16 C C5A FDA . . . G 4 -3.831 11.88 -30.648 0.9 53.67 ? C5A FDA 301 B 1 
HETATM 17 C C6A FDA . . . G 4 -4.505 10.72 -31.093 0.9 55.35 ? C6A FDA 301 B 1 
HETATM 18 N N6A FDA . . . G 4 -5.746 10.726 -31.593 0.9 53.52 ? N6A FDA 301 B 1 
HETATM 19 N N1A FDA . . . G 4 -3.847 9.538 -31.008 0.9 57.4 ? N1A FDA 301 B 1 
HETATM 20 C C2A FDA . . . G 4 -2.599 9.527 -30.518 0.9 55.95 ? C2A FDA 301 B 1 
HETATM 21 N N3A FDA . . . G 4 -1.874 10.549 -30.05 0.9 53.74 ? N3A FDA 301 B 1 
HETATM 22 C C4A FDA . . . G 4 -2.553 11.706 -30.14 0.9 52.81 ? C4A FDA 301 B 1 
HETATM 23 N N1 FDA . . . G 4 0.367 15.682 -42.121 0.9 70.63 ? N1 FDA 301 B 1 
HETATM 24 C C2 FDA . . . G 4 -0.142 14.966 -43.161 0.9 70.11 ? C2 FDA 301 B 1 
HETATM 25 O O2 FDA . . . G 4 -1.263 14.449 -43.092 0.9 69.09 ? O2 FDA 301 B 1 
HETATM 26 N N3 FDA . . . G 4 0.616 14.802 -44.329 0.9 70.92 ? N3 FDA 301 B 1 
HETATM 27 C C4 FDA . . . G 4 1.89 15.306 -44.549 0.9 69.72 ? C4 FDA 301 B 1 
HETATM 28 O O4 FDA . . . G 4 2.488 15.05 -45.594 0.9 68.86 ? O4 FDA 301 B 1 
HETATM 29 C C4X FDA . . . G 4 2.416 16.087 -43.442 0.9 69.74 ? C4X FDA 301 B 1 
HETATM 30 N N5 FDA . . . G 4 3.603 16.625 -43.571 0.9 68.22 ? N5 FDA 301 B 1 
HETATM 31 C C5X FDA . . . G 4 4.113 17.343 -42.496 0.9 66.39 ? C5X FDA 301 B 1 
HETATM 32 C C6 FDA . . . G 4 5.415 17.845 -42.583 0.9 66.01 ? C6 FDA 301 B 1 
HETATM 33 C C7 FDA . . . G 4 6.01 18.509 -41.515 0.9 64.62 ? C7 FDA 301 B 1 
HETATM 34 C C7M FDA . . . G 4 7.406 19.054 -41.674 0.9 65.05 ? C7M FDA 301 B 1 
HETATM 35 C C8 FDA . . . G 4 5.282 18.681 -40.317 0.9 63.66 ? C8 FDA 301 B 1 
HETATM 36 C C8M FDA . . . G 4 5.89 19.358 -39.115 0.9 63.59 ? C8M FDA 301 B 1 
HETATM 37 C C9 FDA . . . G 4 3.979 18.2 -40.237 0.9 63.59 ? C9 FDA 301 B 1 
HETATM 38 C C9A FDA . . . G 4 3.387 17.524 -41.304 0.9 64.71 ? C9A FDA 301 B 1 
HETATM 39 N N10 FDA . . . G 4 2.095 16.944 -41.215 0.9 66.12 ? N10 FDA 301 B 1 
HETATM 40 C C10 FDA . . . G 4 1.581 16.216 -42.253 0.9 70 ? C10 FDA 301 B 1 
HETATM 41 C C1' FDA . . . G 4 1.257 17.097 -40.012 0.9 63.82 ? C1' FDA 301 B 1 
HETATM 42 C C2' FDA . . . G 4 1.505 16.073 -38.909 0.9 62.63 ? C2' FDA 301 B 1 
HETATM 43 O O2' FDA . . . G 4 1.125 14.767 -39.342 0.9 64.85 ? O2' FDA 301 B 1 
HETATM 44 C C3' FDA . . . G 4 0.759 16.449 -37.629 0.9 61.59 ? C3' FDA 301 B 1 
HETATM 45 O O3' FDA . . . G 4 -0.637 16.294 -37.86 0.9 61.97 ? O3' FDA 301 B 1 
HETATM 46 C C4' FDA . . . G 4 1.016 17.825 -37.015 0.9 60.77 ? C4' FDA 301 B 1 
HETATM 47 O O4' FDA . . . G 4 2.412 18.127 -37.085 0.9 61.46 ? O4' FDA 301 B 1 
HETATM 48 C C5' FDA . . . G 4 0.532 17.901 -35.588 0.9 59.28 ? C5' FDA 301 B 1 
HETATM 49 O O5' FDA . . . G 4 1.444 17.117 -34.796 0.9 58.18 ? O5' FDA 301 B 1 
HETATM 50 P P FDA . . . G 4 0.806 16.325 -33.54 0.9 58.4 ? P FDA 301 B 1 
HETATM 51 O O1P FDA . . . G 4 -0.123 15.218 -33.868 0.9 58.07 ? O1P FDA 301 B 1 
HETATM 52 O O2P FDA . . . G 4 2.007 15.776 -32.759 0.9 58.86 ? O2P FDA 301 B 1 
HETATM 53 O O3P FDA . . . G 4 0.059 17.439 -32.678 0.9 57.8 ? O3P FDA 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#