data_7NE0 # _model_server_result.job_id 1pXs1pP83N6a3VHk_IsdBA _model_server_result.datetime_utc '2025-01-10 15:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ne0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1201}' # _entry.id 7NE0 # _exptl.entry_id 7NE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NE0 _cell.length_a 136.78 _cell.length_b 136.78 _cell.length_c 430.11 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 N N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E GU4 1 I 1 GU4 G 1 SCR 5 n E YYJ 2 I 2 YYJ G 1 SCR 5 n F GU4 1 J 1 GU4 G 2 SCR 5 n F YYJ 2 J 2 YYJ G 2 SCR 5 n G GU4 1 K 1 GU4 G 3 SCR 5 n G YYJ 2 K 2 YYJ G 3 SCR 5 n H GU4 1 L 1 GU4 G 4 SCR 5 n H YYJ 2 L 2 YYJ G 4 SCR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 41 1_555 A SG CYS 30 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 49 A CYS 70 1_555 A SG CYS 73 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 57 A CYS 78 1_555 A SG CYS 70 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 98 A CYS 119 1_555 A SG CYS 131 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 160 A CYS 181 1_555 A SG CYS 182 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 264 A CYS 285 1_555 A SG CYS 273 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 266 A CYS 287 1_555 A SG CYS 283 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 285 A CYS 306 1_555 A SG CYS 294 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 A SG CYS 297 A CYS 318 1_555 A SG CYS 317 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 A SG CYS 320 A CYS 341 1_555 A SG CYS 329 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 A SG CYS 322 A CYS 343 1_555 A SG CYS 347 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 A SG CYS 350 A CYS 371 1_555 A SG CYS 359 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 362 A CYS 383 1_555 A SG CYS 380 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 A SG CYS 383 A CYS 404 1_555 A SG CYS 395 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 A SG CYS 385 A CYS 406 1_555 A SG CYS 402 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 A SG CYS 404 A CYS 425 1_555 A SG CYS 413 A CYS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf17 A SG CYS 416 A CYS 437 1_555 A SG CYS 430 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf18 C SG CYS 6 C CYS 139 1_555 D SG CYS 58 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf19 C SG CYS 30 C CYS 163 1_555 D SG CYS 144 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 D SG CYS 13 D CYS 181 1_555 D SG CYS 148 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 74 A ASN 95 1_555 K C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 95 A ASN 116 1_555 I C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 110 A ASN 131 1_555 J C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 B ND2 ASN 162 B ASN 924 1_555 N C1 NAG . B NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 E C1 GU4 . I GU4 1 1_555 E O2 YYJ . I YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 F C1 GU4 . J GU4 1 1_555 F O2 YYJ . J YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 G C1 GU4 . K GU4 1 1_555 G O2 YYJ . K YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 G C6 GU4 . K GU4 1 1_555 G O4 YYJ . K YYJ 2 18_444 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale9 H C1 GU4 . L GU4 1 1_555 H O2 YYJ . L YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A O PHE 86 A PHE 107 1_555 L CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc2 A OD1 ASP 89 A ASP 110 1_555 L CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A O THR 97 A THR 118 1_555 L CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 A OG1 THR 97 A THR 118 1_555 L CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc5 A O SER 256 A SER 277 1_555 L CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 275 n n C1 O1 NAG sing 276 n n C1 O5 NAG sing 277 n n C1 H1 NAG sing 278 n n C2 C3 NAG sing 279 n n C2 N2 NAG sing 280 n n C2 H2 NAG sing 281 n n C3 C4 NAG sing 282 n n C3 O3 NAG sing 283 n n C3 H3 NAG sing 284 n n C4 C5 NAG sing 285 n n C4 O4 NAG sing 286 n n C4 H4 NAG sing 287 n n C5 C6 NAG sing 288 n n C5 O5 NAG sing 289 n n C5 H5 NAG sing 290 n n C6 O6 NAG sing 291 n n C6 H61 NAG sing 292 n n C6 H62 NAG sing 293 n n C7 C8 NAG sing 294 n n C7 N2 NAG sing 295 n n C7 O7 NAG doub 296 n n C8 H81 NAG sing 297 n n C8 H82 NAG sing 298 n n C8 H83 NAG sing 299 n n N2 HN2 NAG sing 300 n n O1 HO1 NAG sing 301 n n O3 HO3 NAG sing 302 n n O4 HO4 NAG sing 303 n n O6 HO6 NAG sing 304 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NE0 _atom_sites.fract_transf_matrix[1][1] 0.007311 _atom_sites.fract_transf_matrix[1][2] 0.004221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 NAG A 1 501 1 NAG NAG . J 6 NAG A 1 502 2 NAG NAG . K 6 NAG A 1 503 3 NAG NAG . L 7 CA A 1 504 1 CA CA . M 8 SO4 A 1 505 1 SO4 SO4 . N 6 NAG B 1 1201 4 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 6 -45.999 35.764 -34.535 1 141.86 ? C1 NAG 1201 B 1 HETATM 2 C C2 NAG . . . N 6 -46.715 34.557 -35.139 1 142.83 ? C2 NAG 1201 B 1 HETATM 3 C C3 NAG . . . N 6 -46.016 34.246 -36.462 1 142.59 ? C3 NAG 1201 B 1 HETATM 4 C C4 NAG . . . N 6 -46.094 35.444 -37.408 1 142.39 ? C4 NAG 1201 B 1 HETATM 5 C C5 NAG . . . N 6 -45.547 36.702 -36.73 1 142.72 ? C5 NAG 1201 B 1 HETATM 6 C C6 NAG . . . N 6 -45.821 37.974 -37.505 1 142.83 ? C6 NAG 1201 B 1 HETATM 7 C C7 NAG . . . N 6 -47.679 33.107 -33.384 1 144.12 ? C7 NAG 1201 B 1 HETATM 8 C C8 NAG . . . N 6 -47.588 31.764 -32.719 1 144.21 ? C8 NAG 1201 B 1 HETATM 9 N N2 NAG . . . N 6 -46.703 33.391 -34.263 1 143.58 ? N2 NAG 1201 B 1 HETATM 10 O O3 NAG . . . N 6 -46.605 33.102 -37.071 1 142.16 ? O3 NAG 1201 B 1 HETATM 11 O O4 NAG . . . N 6 -45.336 35.171 -38.583 1 141.78 ? O4 NAG 1201 B 1 HETATM 12 O O5 NAG . . . N 6 -46.139 36.877 -35.427 1 142.71 ? O5 NAG 1201 B 1 HETATM 13 O O6 NAG . . . N 6 -47.178 38.392 -37.393 1 142.82 ? O6 NAG 1201 B 1 HETATM 14 O O7 NAG . . . N 6 -48.588 33.893 -33.135 1 144.32 ? O7 NAG 1201 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #