data_7NE1 # _model_server_result.job_id IjQyrrRv-_qg9Ob8Q19E5w _model_server_result.datetime_utc '2025-01-10 15:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ne1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 7NE1 # _exptl.entry_id 7NE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.38 _cell.angle_gamma 90 _cell.entry_id 7NE1 _cell.length_a 150.95 _cell.length_b 49.6 _cell.length_c 157.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 K N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GU4 1 G 1 GU4 F 1 SCR 3 n C YYJ 2 G 2 YYJ F 1 SCR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 41 1_555 A SG CYS 30 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 49 A CYS 70 1_555 A SG CYS 73 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 57 A CYS 78 1_555 A SG CYS 70 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 98 A CYS 119 1_555 A SG CYS 131 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 160 A CYS 181 1_555 A SG CYS 182 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 264 A CYS 285 1_555 A SG CYS 273 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 266 A CYS 287 1_555 A SG CYS 283 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 285 A CYS 306 1_555 A SG CYS 294 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 A SG CYS 297 A CYS 318 1_555 A SG CYS 317 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 A SG CYS 320 A CYS 341 1_555 A SG CYS 329 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 A SG CYS 322 A CYS 343 1_555 A SG CYS 347 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 A SG CYS 350 A CYS 371 1_555 A SG CYS 359 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 A SG CYS 362 A CYS 383 1_555 A SG CYS 380 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 A SG CYS 383 A CYS 404 1_555 A SG CYS 395 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 A SG CYS 385 A CYS 406 1_555 A SG CYS 402 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 A SG CYS 404 A CYS 425 1_555 A SG CYS 413 A CYS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 A SG CYS 416 A CYS 437 1_555 A SG CYS 430 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 74 A ASN 95 1_555 F C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 95 A ASN 116 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 110 A ASN 131 1_555 E C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B ND2 ASN 162 B ASN 924 1_555 K C1 NAG . B NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 C C1 GU4 . G GU4 1 1_555 C O2 YYJ . G YYJ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? metalc ? metalc1 A O PHE 86 A PHE 107 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A OD1 ASP 89 A ASP 110 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A O THR 97 A THR 118 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 A OG1 THR 97 A THR 118 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc5 A O SER 256 A SER 277 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 275 n n C1 O1 NAG sing 276 n n C1 O5 NAG sing 277 n n C1 H1 NAG sing 278 n n C2 C3 NAG sing 279 n n C2 N2 NAG sing 280 n n C2 H2 NAG sing 281 n n C3 C4 NAG sing 282 n n C3 O3 NAG sing 283 n n C3 H3 NAG sing 284 n n C4 C5 NAG sing 285 n n C4 O4 NAG sing 286 n n C4 H4 NAG sing 287 n n C5 C6 NAG sing 288 n n C5 O5 NAG sing 289 n n C5 H5 NAG sing 290 n n C6 O6 NAG sing 291 n n C6 H61 NAG sing 292 n n C6 H62 NAG sing 293 n n C7 C8 NAG sing 294 n n C7 N2 NAG sing 295 n n C7 O7 NAG doub 296 n n C8 H81 NAG sing 297 n n C8 H82 NAG sing 298 n n C8 H83 NAG sing 299 n n N2 HN2 NAG sing 300 n n O1 HO1 NAG sing 301 n n O3 HO3 NAG sing 302 n n O4 HO4 NAG sing 303 n n O6 HO6 NAG sing 304 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NE1 _atom_sites.fract_transf_matrix[1][1] 0.006625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001094 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 501 1 NAG NAG . E 4 NAG A 1 502 2 NAG NAG . F 4 NAG A 1 503 3 NAG NAG . G 5 CA A 1 504 1 CA CA . H 6 NO3 A 1 505 1 NO3 NO3 . I 6 NO3 A 1 506 2 NO3 NO3 . J 6 NO3 A 1 507 3 NO3 NO3 . K 4 NAG B 1 1201 4 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -131.014 -103.822 61.432 1 123.91 ? C1 NAG 502 A 1 HETATM 2 C C2 NAG . . . E 4 -129.992 -102.693 61.283 1 125.41 ? C2 NAG 502 A 1 HETATM 3 C C3 NAG . . . E 4 -128.589 -103.282 61.46 1 124.46 ? C3 NAG 502 A 1 HETATM 4 C C4 NAG . . . E 4 -128.476 -104.066 62.767 1 124.19 ? C4 NAG 502 A 1 HETATM 5 C C5 NAG . . . E 4 -129.572 -105.128 62.844 1 124.46 ? C5 NAG 502 A 1 HETATM 6 C C6 NAG . . . E 4 -129.616 -105.863 64.166 1 125.24 ? C6 NAG 502 A 1 HETATM 7 C C7 NAG . . . E 4 -129.939 -102.489 58.784 1 128.69 ? C7 NAG 502 A 1 HETATM 8 C C8 NAG . . . E 4 -130.2 -101.551 57.643 1 128.84 ? C8 NAG 502 A 1 HETATM 9 N N2 NAG . . . E 4 -130.099 -101.963 60.024 1 127.46 ? N2 NAG 502 A 1 HETATM 10 O O3 NAG . . . E 4 -127.609 -102.252 61.419 1 124.18 ? O3 NAG 502 A 1 HETATM 11 O O4 NAG . . . E 4 -127.199 -104.691 62.847 1 123.94 ? O4 NAG 502 A 1 HETATM 12 O O5 NAG . . . E 4 -130.852 -104.496 62.684 1 123.95 ? O5 NAG 502 A 1 HETATM 13 O O6 NAG . . . E 4 -130.752 -106.718 64.245 1 125.53 ? O6 NAG 502 A 1 HETATM 14 O O7 NAG . . . E 4 -129.602 -103.657 58.597 1 129.01 ? O7 NAG 502 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #