data_7NE4 # _model_server_result.job_id 4K6k9JqOx1JQJh9y6egcqw _model_server_result.datetime_utc '2024-11-14 05:22:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ne4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7NE4 # _exptl.entry_id 7NE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NE4 _cell.length_a 68.84 _cell.length_b 98.56 _cell.length_c 108.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 277 n n N1 HN11 SPM sing 278 n n N1 HN12 SPM sing 279 n n C2 C3 SPM sing 280 n n C2 H21 SPM sing 281 n n C2 H22 SPM sing 282 n n C3 C4 SPM sing 283 n n C3 H31 SPM sing 284 n n C3 H32 SPM sing 285 n n C4 N5 SPM sing 286 n n C4 H41 SPM sing 287 n n C4 H42 SPM sing 288 n n N5 C6 SPM sing 289 n n N5 HN5 SPM sing 290 n n C6 C7 SPM sing 291 n n C6 H61 SPM sing 292 n n C6 H62 SPM sing 293 n n C7 C8 SPM sing 294 n n C7 H71 SPM sing 295 n n C7 H72 SPM sing 296 n n C8 C9 SPM sing 297 n n C8 H81 SPM sing 298 n n C8 H82 SPM sing 299 n n C9 N10 SPM sing 300 n n C9 H91 SPM sing 301 n n C9 H92 SPM sing 302 n n N10 C11 SPM sing 303 n n N10 HN0 SPM sing 304 n n C11 C12 SPM sing 305 n n C11 H111 SPM sing 306 n n C11 H112 SPM sing 307 n n C12 C13 SPM sing 308 n n C12 H121 SPM sing 309 n n C12 H122 SPM sing 310 n n C13 N14 SPM sing 311 n n C13 H131 SPM sing 312 n n C13 H132 SPM sing 313 n n N14 HN41 SPM sing 314 n n N14 HN42 SPM sing 315 n n # _atom_sites.entry_id 7NE4 _atom_sites.fract_transf_matrix[1][1] 0.014526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SPM A 1 701 701 SPM SPM . C 2 SPM A 1 702 801 SPM SPM . D 2 SPM A 1 703 901 SPM SPM . E 3 HOH A 1 801 92 HOH HOH . E 3 HOH A 2 802 42 HOH HOH . E 3 HOH A 3 803 19 HOH HOH . E 3 HOH A 4 804 30 HOH HOH . E 3 HOH A 5 805 31 HOH HOH . E 3 HOH A 6 806 68 HOH HOH . E 3 HOH A 7 807 7 HOH HOH . E 3 HOH A 8 808 22 HOH HOH . E 3 HOH A 9 809 173 HOH HOH . E 3 HOH A 10 810 41 HOH HOH . E 3 HOH A 11 811 57 HOH HOH . E 3 HOH A 12 812 20 HOH HOH . E 3 HOH A 13 813 11 HOH HOH . E 3 HOH A 14 814 58 HOH HOH . E 3 HOH A 15 815 6 HOH HOH . E 3 HOH A 16 816 15 HOH HOH . E 3 HOH A 17 817 38 HOH HOH . E 3 HOH A 18 818 84 HOH HOH . E 3 HOH A 19 819 29 HOH HOH . E 3 HOH A 20 820 2 HOH HOH . E 3 HOH A 21 821 17 HOH HOH . E 3 HOH A 22 822 56 HOH HOH . E 3 HOH A 23 823 4 HOH HOH . E 3 HOH A 24 824 3 HOH HOH . E 3 HOH A 25 825 14 HOH HOH . E 3 HOH A 26 826 21 HOH HOH . E 3 HOH A 27 827 24 HOH HOH . E 3 HOH A 28 828 51 HOH HOH . E 3 HOH A 29 829 45 HOH HOH . E 3 HOH A 30 830 8 HOH HOH . E 3 HOH A 31 831 50 HOH HOH . E 3 HOH A 32 832 28 HOH HOH . E 3 HOH A 33 833 46 HOH HOH . E 3 HOH A 34 834 52 HOH HOH . E 3 HOH A 35 835 48 HOH HOH . E 3 HOH A 36 836 1 HOH HOH . E 3 HOH A 37 837 175 HOH HOH . E 3 HOH A 38 838 37 HOH HOH . E 3 HOH A 39 839 5 HOH HOH . E 3 HOH A 40 840 13 HOH HOH . E 3 HOH A 41 841 33 HOH HOH . E 3 HOH A 42 842 26 HOH HOH . E 3 HOH A 43 843 47 HOH HOH . E 3 HOH A 44 844 172 HOH HOH . E 3 HOH A 45 845 44 HOH HOH . E 3 HOH A 46 846 25 HOH HOH . E 3 HOH A 47 847 171 HOH HOH . E 3 HOH A 48 848 169 HOH HOH . E 3 HOH A 49 849 43 HOH HOH . E 3 HOH A 50 850 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . B 2 20.162 -0.981 26.992 1 48.82 ? N1 SPM 701 A 1 HETATM 2 C C2 SPM . . . B 2 21.148 0.035 26.612 1 48.77 ? C2 SPM 701 A 1 HETATM 3 C C3 SPM . . . B 2 22.142 -0.477 25.607 1 48.64 ? C3 SPM 701 A 1 HETATM 4 C C4 SPM . . . B 2 21.53 -0.842 24.272 1 48.56 ? C4 SPM 701 A 1 HETATM 5 N N5 SPM . . . B 2 21.899 0.119 23.232 1 48.47 ? N5 SPM 701 A 1 HETATM 6 C C6 SPM . . . B 2 21.718 -0.356 21.859 1 48.35 ? C6 SPM 701 A 1 HETATM 7 C C7 SPM . . . B 2 20.275 -0.749 21.576 1 48.18 ? C7 SPM 701 A 1 HETATM 8 C C8 SPM . . . B 2 19.917 -0.67 20.1 1 48.1 ? C8 SPM 701 A 1 HETATM 9 C C9 SPM . . . B 2 18.742 0.256 19.826 1 47.98 ? C9 SPM 701 A 1 HETATM 10 N N10 SPM . . . B 2 17.46 -0.4 20.098 1 47.67 ? N10 SPM 701 A 1 HETATM 11 C C11 SPM . . . B 2 16.707 0.138 21.233 1 47.63 ? C11 SPM 701 A 1 HETATM 12 C C12 SPM . . . B 2 15.857 -0.926 21.892 1 47.62 ? C12 SPM 701 A 1 HETATM 13 C C13 SPM . . . B 2 14.441 -0.975 21.39 1 47.4 ? C13 SPM 701 A 1 HETATM 14 N N14 SPM . . . B 2 14.376 -1.075 19.929 1 47.12 ? N14 SPM 701 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #