data_7NEB # _model_server_result.job_id giguO-0t-NAc7aDfJhO5Wg _model_server_result.datetime_utc '2024-11-07 13:16:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7neb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7NEB # _exptl.entry_id 7NEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NEB _cell.length_a 146.02 _cell.length_b 146.02 _cell.length_c 142.115 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 146.02 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 73.01 126.457029 0 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 73.01 -42.152343 94.743333 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 84.304686 94.743333 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 146.02 84.304686 94.743333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 199 A CYS 200 1_555 A SG CYS 257 A CYS 258 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.072 ? covale ? covale1 A NZ LYS 160 A LYS 161 1_555 B C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.242 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NEB _atom_sites.fract_transf_matrix[1][1] 0.006848 _atom_sites.fract_transf_matrix[1][2] 0.003954 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 401 401 PLP PLP . C 3 NA A 1 402 1 NA NA . D 4 HOH A 1 501 87 HOH HOH . D 4 HOH A 2 502 86 HOH HOH . D 4 HOH A 3 503 30 HOH HOH . D 4 HOH A 4 504 1 HOH HOH . D 4 HOH A 5 505 15 HOH HOH . D 4 HOH A 6 506 85 HOH HOH . D 4 HOH A 7 507 28 HOH HOH . D 4 HOH A 8 508 102 HOH HOH . D 4 HOH A 9 509 36 HOH HOH . D 4 HOH A 10 510 39 HOH HOH . D 4 HOH A 11 511 79 HOH HOH . D 4 HOH A 12 512 21 HOH HOH . D 4 HOH A 13 513 10 HOH HOH . D 4 HOH A 14 514 98 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 91 HOH HOH . D 4 HOH A 17 517 40 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 100 HOH HOH . D 4 HOH A 20 520 61 HOH HOH . D 4 HOH A 21 521 43 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 20 HOH HOH . D 4 HOH A 24 524 6 HOH HOH . D 4 HOH A 25 525 88 HOH HOH . D 4 HOH A 26 526 90 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 53 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 14 HOH HOH . D 4 HOH A 31 531 24 HOH HOH . D 4 HOH A 32 532 7 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 99 HOH HOH . D 4 HOH A 35 535 39 HOH HOH . D 4 HOH A 36 536 64 HOH HOH . D 4 HOH A 37 537 7 HOH HOH . D 4 HOH A 38 538 37 HOH HOH . D 4 HOH A 39 539 74 HOH HOH . D 4 HOH A 40 540 27 HOH HOH . D 4 HOH A 41 541 108 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 31 HOH HOH . D 4 HOH A 44 544 9 HOH HOH . D 4 HOH A 45 545 2 HOH HOH . D 4 HOH A 46 546 38 HOH HOH . D 4 HOH A 47 547 101 HOH HOH . D 4 HOH A 48 548 5 HOH HOH . D 4 HOH A 49 549 13 HOH HOH . D 4 HOH A 50 550 35 HOH HOH . D 4 HOH A 51 551 114 HOH HOH . D 4 HOH A 52 552 37 HOH HOH . D 4 HOH A 53 553 76 HOH HOH . D 4 HOH A 54 554 97 HOH HOH . D 4 HOH A 55 555 109 HOH HOH . D 4 HOH A 56 556 111 HOH HOH . D 4 HOH A 57 557 21 HOH HOH . D 4 HOH A 58 558 41 HOH HOH . D 4 HOH A 59 559 106 HOH HOH . D 4 HOH A 60 560 110 HOH HOH . D 4 HOH A 61 561 32 HOH HOH . D 4 HOH A 62 562 81 HOH HOH . D 4 HOH A 63 563 122 HOH HOH . D 4 HOH A 64 564 17 HOH HOH . D 4 HOH A 65 565 29 HOH HOH . D 4 HOH A 66 566 105 HOH HOH . D 4 HOH A 67 567 121 HOH HOH . D 4 HOH A 68 568 120 HOH HOH . D 4 HOH A 69 569 92 HOH HOH . D 4 HOH A 70 570 8 HOH HOH . D 4 HOH A 71 571 116 HOH HOH . D 4 HOH A 72 572 118 HOH HOH . D 4 HOH A 73 573 16 HOH HOH . D 4 HOH A 74 574 33 HOH HOH . D 4 HOH A 75 575 46 HOH HOH . D 4 HOH A 76 576 38 HOH HOH . D 4 HOH A 77 577 25 HOH HOH . D 4 HOH A 78 578 77 HOH HOH . D 4 HOH A 79 579 33 HOH HOH . D 4 HOH A 80 580 84 HOH HOH . D 4 HOH A 81 581 103 HOH HOH . D 4 HOH A 82 582 57 HOH HOH . D 4 HOH A 83 583 115 HOH HOH . D 4 HOH A 84 584 14 HOH HOH . D 4 HOH A 85 585 19 HOH HOH . D 4 HOH A 86 586 104 HOH HOH . D 4 HOH A 87 587 78 HOH HOH . D 4 HOH A 88 588 18 HOH HOH . D 4 HOH A 89 589 107 HOH HOH . D 4 HOH A 90 590 42 HOH HOH . D 4 HOH A 91 591 10 HOH HOH . D 4 HOH A 92 592 75 HOH HOH . D 4 HOH A 93 593 36 HOH HOH . D 4 HOH A 94 594 8 HOH HOH . D 4 HOH A 95 595 62 HOH HOH . D 4 HOH A 96 596 83 HOH HOH . D 4 HOH A 97 597 4 HOH HOH . D 4 HOH A 98 598 63 HOH HOH . D 4 HOH A 99 599 45 HOH HOH . D 4 HOH A 100 600 23 HOH HOH . D 4 HOH A 101 601 93 HOH HOH . D 4 HOH A 102 602 23 HOH HOH . D 4 HOH A 103 603 89 HOH HOH . D 4 HOH A 104 604 18 HOH HOH . D 4 HOH A 105 605 94 HOH HOH . D 4 HOH A 106 606 31 HOH HOH . D 4 HOH A 107 607 117 HOH HOH . D 4 HOH A 108 608 47 HOH HOH . D 4 HOH A 109 609 71 HOH HOH . D 4 HOH A 110 610 40 HOH HOH . D 4 HOH A 111 611 113 HOH HOH . D 4 HOH A 112 612 65 HOH HOH . D 4 HOH A 113 613 95 HOH HOH . D 4 HOH A 114 614 112 HOH HOH . D 4 HOH A 115 615 27 HOH HOH . D 4 HOH A 116 616 82 HOH HOH . D 4 HOH A 117 617 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.868 _atom_site.Cartn_y 47.398 _atom_site.Cartn_z 76.585 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #