data_7NED
#
_model_server_result.job_id            M7YFDqHfI2z6Y3ik08B2Ng 
_model_server_result.datetime_utc      '2024-11-13 06:58:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ned 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    7NED 
#
_exptl.entry_id    7NED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              138.124 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E)-3-(1H-IMIDAZOL-4-YL)ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NED 
_cell.length_a            54.349 
_cell.length_b            62.747 
_cell.length_c            151.466 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (y,z,x)' 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 54.349 0 151.466 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H6 N2 O2' 
_chem_comp.formula_weight    138.124 
_chem_comp.id                URO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E)-3-(1H-IMIDAZOL-4-YL)ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAI URO doub 442 n n 
CAI OAB URO sing 443 n n 
CAI CAC URO sing 444 n n 
OAB HAB URO sing 445 n n 
CAC CAD URO doub 446 e n 
CAC HAC URO sing 447 n n 
CAD CAJ URO sing 448 n n 
CAD HAD URO sing 449 n n 
CAJ CAF URO doub 450 n y 
CAJ NAG URO sing 451 n y 
CAF NAH URO sing 452 n y 
CAF HAF URO sing 453 n n 
NAH CAE URO sing 454 n y 
NAH HAH URO sing 455 n n 
CAE NAG URO doub 456 n y 
CAE HAE URO sing 457 n n 
#
_atom_sites.entry_id                     7NED 
_atom_sites.fract_transf_matrix[1][1]    0.0184 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006602 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 URO A 1 701 701 URO UCA . 
C 3 NAD A 1 702 801 NAD NAD . 
D 4 EDO A 1 703 901 EDO EDO . 
E 5 HOH A 1 801 86 HOH HOH . 
E 5 HOH A 2 802 1 HOH HOH . 
E 5 HOH A 3 803 251 HOH HOH . 
E 5 HOH A 4 804 200 HOH HOH . 
E 5 HOH A 5 805 91 HOH HOH . 
E 5 HOH A 6 806 106 HOH HOH . 
E 5 HOH A 7 807 187 HOH HOH . 
E 5 HOH A 8 808 93 HOH HOH . 
E 5 HOH A 9 809 224 HOH HOH . 
E 5 HOH A 10 810 272 HOH HOH . 
E 5 HOH A 11 811 104 HOH HOH . 
E 5 HOH A 12 812 56 HOH HOH . 
E 5 HOH A 13 813 76 HOH HOH . 
E 5 HOH A 14 814 37 HOH HOH . 
E 5 HOH A 15 815 270 HOH HOH . 
E 5 HOH A 16 816 216 HOH HOH . 
E 5 HOH A 17 817 82 HOH HOH . 
E 5 HOH A 18 818 403 HOH HOH . 
E 5 HOH A 19 819 55 HOH HOH . 
E 5 HOH A 20 820 280 HOH HOH . 
E 5 HOH A 21 821 61 HOH HOH . 
E 5 HOH A 22 822 432 HOH HOH . 
E 5 HOH A 23 823 152 HOH HOH . 
E 5 HOH A 24 824 206 HOH HOH . 
E 5 HOH A 25 825 157 HOH HOH . 
E 5 HOH A 26 826 122 HOH HOH . 
E 5 HOH A 27 827 71 HOH HOH . 
E 5 HOH A 28 828 174 HOH HOH . 
E 5 HOH A 29 829 185 HOH HOH . 
E 5 HOH A 30 830 145 HOH HOH . 
E 5 HOH A 31 831 18 HOH HOH . 
E 5 HOH A 32 832 98 HOH HOH . 
E 5 HOH A 33 833 204 HOH HOH . 
E 5 HOH A 34 834 75 HOH HOH . 
E 5 HOH A 35 835 42 HOH HOH . 
E 5 HOH A 36 836 10 HOH HOH . 
E 5 HOH A 37 837 412 HOH HOH . 
E 5 HOH A 38 838 68 HOH HOH . 
E 5 HOH A 39 839 139 HOH HOH . 
E 5 HOH A 40 840 175 HOH HOH . 
E 5 HOH A 41 841 54 HOH HOH . 
E 5 HOH A 42 842 134 HOH HOH . 
E 5 HOH A 43 843 114 HOH HOH . 
E 5 HOH A 44 844 103 HOH HOH . 
E 5 HOH A 45 845 228 HOH HOH . 
E 5 HOH A 46 846 96 HOH HOH . 
E 5 HOH A 47 847 41 HOH HOH . 
E 5 HOH A 48 848 26 HOH HOH . 
E 5 HOH A 49 849 233 HOH HOH . 
E 5 HOH A 50 850 101 HOH HOH . 
E 5 HOH A 51 851 7 HOH HOH . 
E 5 HOH A 52 852 158 HOH HOH . 
E 5 HOH A 53 853 214 HOH HOH . 
E 5 HOH A 54 854 136 HOH HOH . 
E 5 HOH A 55 855 33 HOH HOH . 
E 5 HOH A 56 856 17 HOH HOH . 
E 5 HOH A 57 857 171 HOH HOH . 
E 5 HOH A 58 858 57 HOH HOH . 
E 5 HOH A 59 859 65 HOH HOH . 
E 5 HOH A 60 860 36 HOH HOH . 
E 5 HOH A 61 861 118 HOH HOH . 
E 5 HOH A 62 862 124 HOH HOH . 
E 5 HOH A 63 863 22 HOH HOH . 
E 5 HOH A 64 864 64 HOH HOH . 
E 5 HOH A 65 865 258 HOH HOH . 
E 5 HOH A 66 866 88 HOH HOH . 
E 5 HOH A 67 867 79 HOH HOH . 
E 5 HOH A 68 868 20 HOH HOH . 
E 5 HOH A 69 869 73 HOH HOH . 
E 5 HOH A 70 870 164 HOH HOH . 
E 5 HOH A 71 871 165 HOH HOH . 
E 5 HOH A 72 872 25 HOH HOH . 
E 5 HOH A 73 873 369 HOH HOH . 
E 5 HOH A 74 874 69 HOH HOH . 
E 5 HOH A 75 875 12 HOH HOH . 
E 5 HOH A 76 876 21 HOH HOH . 
E 5 HOH A 77 877 15 HOH HOH . 
E 5 HOH A 78 878 172 HOH HOH . 
E 5 HOH A 79 879 110 HOH HOH . 
E 5 HOH A 80 880 109 HOH HOH . 
E 5 HOH A 81 881 92 HOH HOH . 
E 5 HOH A 82 882 52 HOH HOH . 
E 5 HOH A 83 883 168 HOH HOH . 
E 5 HOH A 84 884 154 HOH HOH . 
E 5 HOH A 85 885 31 HOH HOH . 
E 5 HOH A 86 886 16 HOH HOH . 
E 5 HOH A 87 887 62 HOH HOH . 
E 5 HOH A 88 888 161 HOH HOH . 
E 5 HOH A 89 889 74 HOH HOH . 
E 5 HOH A 90 890 39 HOH HOH . 
E 5 HOH A 91 891 97 HOH HOH . 
E 5 HOH A 92 892 217 HOH HOH . 
E 5 HOH A 93 893 13 HOH HOH . 
E 5 HOH A 94 894 166 HOH HOH . 
E 5 HOH A 95 895 202 HOH HOH . 
E 5 HOH A 96 896 50 HOH HOH . 
E 5 HOH A 97 897 282 HOH HOH . 
E 5 HOH A 98 898 196 HOH HOH . 
E 5 HOH A 99 899 6 HOH HOH . 
E 5 HOH A 100 900 100 HOH HOH . 
E 5 HOH A 101 901 89 HOH HOH . 
E 5 HOH A 102 902 149 HOH HOH . 
E 5 HOH A 103 903 67 HOH HOH . 
E 5 HOH A 104 904 127 HOH HOH . 
E 5 HOH A 105 905 229 HOH HOH . 
E 5 HOH A 106 906 66 HOH HOH . 
E 5 HOH A 107 907 150 HOH HOH . 
E 5 HOH A 108 908 170 HOH HOH . 
E 5 HOH A 109 909 85 HOH HOH . 
E 5 HOH A 110 910 78 HOH HOH . 
E 5 HOH A 111 911 59 HOH HOH . 
E 5 HOH A 112 912 49 HOH HOH . 
E 5 HOH A 113 913 131 HOH HOH . 
E 5 HOH A 114 914 126 HOH HOH . 
E 5 HOH A 115 915 167 HOH HOH . 
E 5 HOH A 116 916 58 HOH HOH . 
E 5 HOH A 117 917 121 HOH HOH . 
E 5 HOH A 118 918 153 HOH HOH . 
E 5 HOH A 119 919 38 HOH HOH . 
E 5 HOH A 120 920 5 HOH HOH . 
E 5 HOH A 121 921 140 HOH HOH . 
E 5 HOH A 122 922 53 HOH HOH . 
E 5 HOH A 123 923 128 HOH HOH . 
E 5 HOH A 124 924 231 HOH HOH . 
E 5 HOH A 125 925 3 HOH HOH . 
E 5 HOH A 126 926 99 HOH HOH . 
E 5 HOH A 127 927 144 HOH HOH . 
E 5 HOH A 128 928 102 HOH HOH . 
E 5 HOH A 129 929 28 HOH HOH . 
E 5 HOH A 130 930 8 HOH HOH . 
E 5 HOH A 131 931 2 HOH HOH . 
E 5 HOH A 132 932 43 HOH HOH . 
E 5 HOH A 133 933 146 HOH HOH . 
E 5 HOH A 134 934 95 HOH HOH . 
E 5 HOH A 135 935 27 HOH HOH . 
E 5 HOH A 136 936 83 HOH HOH . 
E 5 HOH A 137 937 24 HOH HOH . 
E 5 HOH A 138 938 183 HOH HOH . 
E 5 HOH A 139 939 29 HOH HOH . 
E 5 HOH A 140 940 395 HOH HOH . 
E 5 HOH A 141 941 234 HOH HOH . 
E 5 HOH A 142 942 48 HOH HOH . 
E 5 HOH A 143 943 347 HOH HOH . 
E 5 HOH A 144 944 40 HOH HOH . 
E 5 HOH A 145 945 44 HOH HOH . 
E 5 HOH A 146 946 30 HOH HOH . 
E 5 HOH A 147 947 81 HOH HOH . 
E 5 HOH A 148 948 220 HOH HOH . 
E 5 HOH A 149 949 180 HOH HOH . 
E 5 HOH A 150 950 210 HOH HOH . 
E 5 HOH A 151 951 14 HOH HOH . 
E 5 HOH A 152 952 77 HOH HOH . 
E 5 HOH A 153 953 188 HOH HOH . 
E 5 HOH A 154 954 163 HOH HOH . 
E 5 HOH A 155 955 261 HOH HOH . 
E 5 HOH A 156 956 186 HOH HOH . 
E 5 HOH A 157 957 177 HOH HOH . 
E 5 HOH A 158 958 292 HOH HOH . 
E 5 HOH A 159 959 143 HOH HOH . 
E 5 HOH A 160 960 80 HOH HOH . 
E 5 HOH A 161 961 46 HOH HOH . 
E 5 HOH A 162 962 298 HOH HOH . 
E 5 HOH A 163 963 130 HOH HOH . 
E 5 HOH A 164 964 141 HOH HOH . 
E 5 HOH A 165 965 51 HOH HOH . 
E 5 HOH A 166 966 223 HOH HOH . 
E 5 HOH A 167 967 32 HOH HOH . 
E 5 HOH A 168 968 105 HOH HOH . 
E 5 HOH A 169 969 23 HOH HOH . 
E 5 HOH A 170 970 34 HOH HOH . 
E 5 HOH A 171 971 11 HOH HOH . 
E 5 HOH A 172 972 120 HOH HOH . 
E 5 HOH A 173 973 137 HOH HOH . 
E 5 HOH A 174 974 241 HOH HOH . 
E 5 HOH A 175 975 90 HOH HOH . 
E 5 HOH A 176 976 434 HOH HOH . 
E 5 HOH A 177 977 396 HOH HOH . 
E 5 HOH A 178 978 107 HOH HOH . 
E 5 HOH A 179 979 129 HOH HOH . 
E 5 HOH A 180 980 45 HOH HOH . 
E 5 HOH A 181 981 125 HOH HOH . 
E 5 HOH A 182 982 115 HOH HOH . 
E 5 HOH A 183 983 84 HOH HOH . 
E 5 HOH A 184 984 70 HOH HOH . 
E 5 HOH A 185 985 179 HOH HOH . 
E 5 HOH A 186 986 199 HOH HOH . 
E 5 HOH A 187 987 181 HOH HOH . 
E 5 HOH A 188 988 9 HOH HOH . 
E 5 HOH A 189 989 254 HOH HOH . 
E 5 HOH A 190 990 264 HOH HOH . 
E 5 HOH A 191 991 47 HOH HOH . 
E 5 HOH A 192 992 226 HOH HOH . 
E 5 HOH A 193 993 190 HOH HOH . 
E 5 HOH A 194 994 169 HOH HOH . 
E 5 HOH A 195 995 87 HOH HOH . 
E 5 HOH A 196 996 123 HOH HOH . 
E 5 HOH A 197 997 117 HOH HOH . 
E 5 HOH A 198 998 112 HOH HOH . 
E 5 HOH A 199 999 173 HOH HOH . 
E 5 HOH A 200 1000 222 HOH HOH . 
E 5 HOH A 201 1001 235 HOH HOH . 
E 5 HOH A 202 1002 4 HOH HOH . 
E 5 HOH A 203 1003 435 HOH HOH . 
E 5 HOH A 204 1004 176 HOH HOH . 
E 5 HOH A 205 1005 192 HOH HOH . 
E 5 HOH A 206 1006 60 HOH HOH . 
E 5 HOH A 207 1007 72 HOH HOH . 
E 5 HOH A 208 1008 133 HOH HOH . 
E 5 HOH A 209 1009 108 HOH HOH . 
E 5 HOH A 210 1010 159 HOH HOH . 
E 5 HOH A 211 1011 201 HOH HOH . 
E 5 HOH A 212 1012 296 HOH HOH . 
E 5 HOH A 213 1013 19 HOH HOH . 
E 5 HOH A 214 1014 268 HOH HOH . 
E 5 HOH A 215 1015 151 HOH HOH . 
E 5 HOH A 216 1016 35 HOH HOH . 
E 5 HOH A 217 1017 142 HOH HOH . 
E 5 HOH A 218 1018 178 HOH HOH . 
E 5 HOH A 219 1019 242 HOH HOH . 
E 5 HOH A 220 1020 384 HOH HOH . 
E 5 HOH A 221 1021 225 HOH HOH . 
E 5 HOH A 222 1022 348 HOH HOH . 
E 5 HOH A 223 1023 195 HOH HOH . 
E 5 HOH A 224 1024 339 HOH HOH . 
E 5 HOH A 225 1025 238 HOH HOH . 
E 5 HOH A 226 1026 182 HOH HOH . 
E 5 HOH A 227 1027 285 HOH HOH . 
E 5 HOH A 228 1028 433 HOH HOH . 
E 5 HOH A 229 1029 94 HOH HOH . 
E 5 HOH A 230 1030 63 HOH HOH . 
E 5 HOH A 231 1031 249 HOH HOH . 
E 5 HOH A 232 1032 393 HOH HOH . 
E 5 HOH A 233 1033 138 HOH HOH . 
E 5 HOH A 234 1034 436 HOH HOH . 
E 5 HOH A 235 1035 304 HOH HOH . 
E 5 HOH A 236 1036 389 HOH HOH . 
E 5 HOH A 237 1037 257 HOH HOH . 
E 5 HOH A 238 1038 371 HOH HOH . 
E 5 HOH A 239 1039 203 HOH HOH . 
E 5 HOH A 240 1040 291 HOH HOH . 
E 5 HOH A 241 1041 111 HOH HOH . 
E 5 HOH A 242 1042 373 HOH HOH . 
E 5 HOH A 243 1043 243 HOH HOH . 
E 5 HOH A 244 1044 244 HOH HOH . 
E 5 HOH A 245 1045 391 HOH HOH . 
E 5 HOH A 246 1046 212 HOH HOH . 
E 5 HOH A 247 1047 189 HOH HOH . 
E 5 HOH A 248 1048 287 HOH HOH . 
E 5 HOH A 249 1049 193 HOH HOH . 
E 5 HOH A 250 1050 205 HOH HOH . 
E 5 HOH A 251 1051 209 HOH HOH . 
E 5 HOH A 252 1052 255 HOH HOH . 
E 5 HOH A 253 1053 326 HOH HOH . 
E 5 HOH A 254 1054 218 HOH HOH . 
E 5 HOH A 255 1055 245 HOH HOH . 
E 5 HOH A 256 1056 155 HOH HOH . 
E 5 HOH A 257 1057 208 HOH HOH . 
E 5 HOH A 258 1058 431 HOH HOH . 
E 5 HOH A 259 1059 281 HOH HOH . 
E 5 HOH A 260 1060 194 HOH HOH . 
E 5 HOH A 261 1061 237 HOH HOH . 
E 5 HOH A 262 1062 385 HOH HOH . 
E 5 HOH A 263 1063 116 HOH HOH . 
E 5 HOH A 264 1064 162 HOH HOH . 
E 5 HOH A 265 1065 198 HOH HOH . 
E 5 HOH A 266 1066 132 HOH HOH . 
E 5 HOH A 267 1067 211 HOH HOH . 
E 5 HOH A 268 1068 160 HOH HOH . 
E 5 HOH A 269 1069 353 HOH HOH . 
E 5 HOH A 270 1070 358 HOH HOH . 
E 5 HOH A 271 1071 265 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA URO . . . B 2 24.691 24.37 54.829 0.69 21.59 ? OAA URO 701 A 1 
HETATM 2 C CAI URO . . . B 2 23.726 24.071 55.651 0.69 14.42 ? CAI URO 701 A 1 
HETATM 3 O OAB URO . . . B 2 22.808 24.766 55.839 0.69 14.11 ? OAB URO 701 A 1 
HETATM 4 C CAC URO . . . B 2 23.794 22.817 56.419 0.69 25.17 ? CAC URO 701 A 1 
HETATM 5 C CAD URO . . . B 2 24.815 22.015 56.266 0.69 26.9 ? CAD URO 701 A 1 
HETATM 6 C CAJ URO . . . B 2 24.71 20.86 57.077 0.69 25.48 ? CAJ URO 701 A 1 
HETATM 7 C CAF URO . . . B 2 25.41 19.695 56.973 0.69 28.08 ? CAF URO 701 A 1 
HETATM 8 N NAH URO . . . B 2 24.902 18.744 57.818 0.69 29.29 ? NAH URO 701 A 1 
HETATM 9 C CAE URO . . . B 2 23.906 19.34 58.433 0.69 24.87 ? CAE URO 701 A 1 
HETATM 10 N NAG URO . . . B 2 23.747 20.617 58.02 0.69 26.8 ? NAG URO 701 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#