data_7NEG # _model_server_result.job_id 3QfotIPAKesAzxXmFAhH6w _model_server_result.datetime_utc '2024-10-11 21:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7neg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 7NEG # _exptl.entry_id 7NEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.634 _cell.angle_gamma 90 _cell.entry_id 7NEG _cell.length_a 195.099 _cell.length_b 84.95 _cell.length_c 57.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG E 601 NAG 4 n D NAG 2 A 2 NAG E 701 NAG 4 n D FUC 3 A 3 FUC E 600 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 144 H CYS 144 1_555 A SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 18 E CYS 336 1_555 C SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 61 E CYS 379 1_555 C SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 C SG CYS 162 E CYS 480 1_555 C SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 C ND2 ASN 25 E ASN 343 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 D O6 NAG . A NAG 1 1_555 D C1 FUC . A FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 7NEG _atom_sites.fract_transf_matrix[1][1] 0.005126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000962 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GOL H 1 501 501 GOL GOL . F 6 SO4 H 1 502 6 SO4 SO4 . G 5 GOL L 1 301 301 GOL GOL . H 5 GOL L 1 302 301 GOL GOL . I 5 GOL L 1 303 401 GOL GOL . J 6 SO4 L 1 304 5 SO4 SO4 . K 5 GOL E 1 601 401 GOL GOL . L 6 SO4 E 1 602 1 SO4 SO4 . M 7 HOH H 1 601 76 HOH HOH . M 7 HOH H 2 602 87 HOH HOH . M 7 HOH H 3 603 104 HOH HOH . M 7 HOH H 4 604 121 HOH HOH . M 7 HOH H 5 605 42 HOH HOH . M 7 HOH H 6 606 4 HOH HOH . M 7 HOH H 7 607 52 HOH HOH . M 7 HOH H 8 608 23 HOH HOH . M 7 HOH H 9 609 18 HOH HOH . M 7 HOH H 10 610 95 HOH HOH . M 7 HOH H 11 611 38 HOH HOH . M 7 HOH H 12 612 97 HOH HOH . M 7 HOH H 13 613 44 HOH HOH . M 7 HOH H 14 614 10 HOH HOH . M 7 HOH H 15 615 68 HOH HOH . M 7 HOH H 16 616 34 HOH HOH . M 7 HOH H 17 617 103 HOH HOH . M 7 HOH H 18 618 30 HOH HOH . M 7 HOH H 19 619 65 HOH HOH . M 7 HOH H 20 620 59 HOH HOH . M 7 HOH H 21 621 22 HOH HOH . M 7 HOH H 22 622 53 HOH HOH . M 7 HOH H 23 623 69 HOH HOH . M 7 HOH H 24 624 64 HOH HOH . M 7 HOH H 25 625 82 HOH HOH . M 7 HOH H 26 626 47 HOH HOH . M 7 HOH H 27 627 6 HOH HOH . M 7 HOH H 28 628 134 HOH HOH . M 7 HOH H 29 629 80 HOH HOH . M 7 HOH H 30 630 73 HOH HOH . M 7 HOH H 31 631 126 HOH HOH . M 7 HOH H 32 632 91 HOH HOH . M 7 HOH H 33 633 14 HOH HOH . M 7 HOH H 34 634 29 HOH HOH . M 7 HOH H 35 635 128 HOH HOH . M 7 HOH H 36 636 79 HOH HOH . M 7 HOH H 37 637 83 HOH HOH . M 7 HOH H 38 638 66 HOH HOH . M 7 HOH H 39 639 58 HOH HOH . M 7 HOH H 40 640 36 HOH HOH . M 7 HOH H 41 641 131 HOH HOH . M 7 HOH H 42 642 55 HOH HOH . M 7 HOH H 43 643 19 HOH HOH . M 7 HOH H 44 644 32 HOH HOH . M 7 HOH H 45 645 99 HOH HOH . M 7 HOH H 46 646 46 HOH HOH . M 7 HOH H 47 647 81 HOH HOH . M 7 HOH H 48 648 75 HOH HOH . M 7 HOH H 49 649 125 HOH HOH . M 7 HOH H 50 650 109 HOH HOH . M 7 HOH H 51 651 102 HOH HOH . M 7 HOH H 52 652 132 HOH HOH . M 7 HOH H 53 653 78 HOH HOH . M 7 HOH H 54 654 71 HOH HOH . M 7 HOH H 55 655 133 HOH HOH . M 7 HOH H 56 656 116 HOH HOH . M 7 HOH H 57 657 51 HOH HOH . M 7 HOH H 58 658 49 HOH HOH . M 7 HOH H 59 659 110 HOH HOH . M 7 HOH H 60 660 120 HOH HOH . M 7 HOH H 61 661 105 HOH HOH . M 7 HOH H 62 662 77 HOH HOH . M 7 HOH H 63 663 50 HOH HOH . M 7 HOH H 64 664 89 HOH HOH . M 7 HOH H 65 665 92 HOH HOH . M 7 HOH H 66 666 107 HOH HOH . N 7 HOH L 1 401 130 HOH HOH . N 7 HOH L 2 402 15 HOH HOH . N 7 HOH L 3 403 62 HOH HOH . N 7 HOH L 4 404 8 HOH HOH . N 7 HOH L 5 405 123 HOH HOH . N 7 HOH L 6 406 124 HOH HOH . N 7 HOH L 7 407 112 HOH HOH . N 7 HOH L 8 408 25 HOH HOH . N 7 HOH L 9 409 43 HOH HOH . N 7 HOH L 10 410 74 HOH HOH . N 7 HOH L 11 411 13 HOH HOH . N 7 HOH L 12 412 60 HOH HOH . N 7 HOH L 13 413 67 HOH HOH . N 7 HOH L 14 414 101 HOH HOH . N 7 HOH L 15 415 21 HOH HOH . N 7 HOH L 16 416 27 HOH HOH . N 7 HOH L 17 417 7 HOH HOH . N 7 HOH L 18 418 12 HOH HOH . N 7 HOH L 19 419 117 HOH HOH . N 7 HOH L 20 420 57 HOH HOH . N 7 HOH L 21 421 11 HOH HOH . N 7 HOH L 22 422 24 HOH HOH . N 7 HOH L 23 423 118 HOH HOH . N 7 HOH L 24 424 20 HOH HOH . N 7 HOH L 25 425 127 HOH HOH . N 7 HOH L 26 426 111 HOH HOH . N 7 HOH L 27 427 93 HOH HOH . N 7 HOH L 28 428 17 HOH HOH . N 7 HOH L 29 429 86 HOH HOH . N 7 HOH L 30 430 45 HOH HOH . N 7 HOH L 31 431 33 HOH HOH . N 7 HOH L 32 432 98 HOH HOH . N 7 HOH L 33 433 106 HOH HOH . N 7 HOH L 34 434 129 HOH HOH . N 7 HOH L 35 435 31 HOH HOH . N 7 HOH L 36 436 119 HOH HOH . N 7 HOH L 37 437 88 HOH HOH . N 7 HOH L 38 438 48 HOH HOH . N 7 HOH L 39 439 56 HOH HOH . N 7 HOH L 40 440 108 HOH HOH . O 7 HOH E 1 701 1 HOH HOH . O 7 HOH E 2 702 63 HOH HOH . O 7 HOH E 3 703 70 HOH HOH . O 7 HOH E 4 704 40 HOH HOH . O 7 HOH E 5 705 61 HOH HOH . O 7 HOH E 6 706 41 HOH HOH . O 7 HOH E 7 707 3 HOH HOH . O 7 HOH E 8 708 122 HOH HOH . O 7 HOH E 9 709 2 HOH HOH . O 7 HOH E 10 710 9 HOH HOH . O 7 HOH E 11 711 5 HOH HOH . O 7 HOH E 12 712 85 HOH HOH . O 7 HOH E 13 713 39 HOH HOH . O 7 HOH E 14 714 90 HOH HOH . O 7 HOH E 15 715 37 HOH HOH . O 7 HOH E 16 716 84 HOH HOH . O 7 HOH E 17 717 94 HOH HOH . O 7 HOH E 18 718 28 HOH HOH . O 7 HOH E 19 719 16 HOH HOH . O 7 HOH E 20 720 114 HOH HOH . O 7 HOH E 21 721 100 HOH HOH . O 7 HOH E 22 722 26 HOH HOH . O 7 HOH E 23 723 72 HOH HOH . O 7 HOH E 24 724 35 HOH HOH . O 7 HOH E 25 725 96 HOH HOH . O 7 HOH E 26 726 113 HOH HOH . O 7 HOH E 27 727 54 HOH HOH . O 7 HOH E 28 728 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -51.053 3.579 13.908 1 75.11 ? C1 GOL 601 E 1 HETATM 2 O O1 GOL . . . K 5 -52.258 2.899 14.118 1 75.11 ? O1 GOL 601 E 1 HETATM 3 C C2 GOL . . . K 5 -51.085 4.172 12.459 1 80.17 ? C2 GOL 601 E 1 HETATM 4 O O2 GOL . . . K 5 -49.819 4.192 11.867 1 83.53 ? O2 GOL 601 E 1 HETATM 5 C C3 GOL . . . K 5 -51.701 5.603 12.603 1 69.55 ? C3 GOL 601 E 1 HETATM 6 O O3 GOL . . . K 5 -51.433 6.302 11.407 1 73.51 ? O3 GOL 601 E 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #