data_7NEQ
#
_model_server_result.job_id            vNQ8ZE1VJnirsg1zyPf4QA 
_model_server_result.datetime_utc      '2024-12-21 16:51:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7neq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1002}' 
#
_entry.id    7NEQ 
#
_exptl.entry_id    7NEQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              635.853 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-decanoyloxy-propyl] octadecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NEQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 F SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 B SG CYS 23 C CYS 23 1_555 B SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 E SG CYS 22 F CYS 22 1_555 E SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
disulf ? disulf7 F SG CYS 592 B CYS 592 1_555 F SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 596 A ASN 596 1_555 G C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 F ND2 ASN 596 B ASN 596 1_555 L C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C33 H66 N O8 P' 
_chem_comp.formula_weight    635.853 
_chem_comp.id                U9N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-decanoyloxy-propyl] octadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 U9N sing 556 n n 
C5 C4 U9N sing 557 n n 
C4 O4P U9N sing 558 n n 
O4P P U9N sing 559 n n 
O5 C30 U9N doub 560 n n 
C30 C31 U9N sing 561 n n 
C30 O3 U9N sing 562 n n 
C31 C32 U9N sing 563 n n 
O3 C3 U9N sing 564 n n 
P O2P U9N doub 565 n n 
P O3P U9N sing 566 n n 
P O1P U9N sing 567 n n 
O3P C1 U9N sing 568 n n 
C3 C2 U9N sing 569 n n 
C32 C33 U9N sing 570 n n 
C2 C1 U9N sing 571 n n 
C2 O2 U9N sing 572 n n 
C33 C34 U9N sing 573 n n 
O2 C10 U9N sing 574 n n 
C34 C35 U9N sing 575 n n 
O4 C10 U9N doub 576 n n 
C38 C37 U9N sing 577 n n 
C38 C39 U9N sing 578 n n 
C10 C11 U9N sing 579 n n 
C41 C40 U9N sing 580 n n 
C41 C42 U9N sing 581 n n 
C37 C36 U9N sing 582 n n 
C43 C42 U9N sing 583 n n 
C43 C44 U9N sing 584 n n 
C40 C39 U9N sing 585 n n 
C11 C12 U9N sing 586 n n 
C35 C36 U9N sing 587 n n 
C45 C44 U9N sing 588 n n 
C45 C46 U9N sing 589 n n 
C12 C13 U9N sing 590 n n 
C46 C47 U9N sing 591 n n 
C13 C14 U9N sing 592 n n 
C14 C15 U9N sing 593 n n 
C15 C16 U9N sing 594 n n 
C16 C17 U9N sing 595 n n 
C17 C18 U9N sing 596 n n 
C18 C19 U9N sing 597 n n 
C2 H1 U9N sing 598 n n 
C1 H2 U9N sing 599 n n 
C1 H3 U9N sing 600 n n 
N H4 U9N sing 601 n n 
N H5 U9N sing 602 n n 
C3 H7 U9N sing 603 n n 
C3 H8 U9N sing 604 n n 
C4 H9 U9N sing 605 n n 
C4 H10 U9N sing 606 n n 
C5 H11 U9N sing 607 n n 
C5 H12 U9N sing 608 n n 
C11 H13 U9N sing 609 n n 
C11 H14 U9N sing 610 n n 
C12 H15 U9N sing 611 n n 
C12 H16 U9N sing 612 n n 
C13 H17 U9N sing 613 n n 
C13 H18 U9N sing 614 n n 
C14 H19 U9N sing 615 n n 
C14 H20 U9N sing 616 n n 
C15 H21 U9N sing 617 n n 
C15 H22 U9N sing 618 n n 
C16 H23 U9N sing 619 n n 
C16 H24 U9N sing 620 n n 
C17 H25 U9N sing 621 n n 
C17 H26 U9N sing 622 n n 
C18 H27 U9N sing 623 n n 
C18 H28 U9N sing 624 n n 
C19 H29 U9N sing 625 n n 
C19 H30 U9N sing 626 n n 
C19 H31 U9N sing 627 n n 
C31 H32 U9N sing 628 n n 
C31 H33 U9N sing 629 n n 
C32 H34 U9N sing 630 n n 
C32 H35 U9N sing 631 n n 
C33 H36 U9N sing 632 n n 
C33 H37 U9N sing 633 n n 
C34 H38 U9N sing 634 n n 
C34 H39 U9N sing 635 n n 
C35 H40 U9N sing 636 n n 
C35 H41 U9N sing 637 n n 
C36 H42 U9N sing 638 n n 
C36 H43 U9N sing 639 n n 
C37 H44 U9N sing 640 n n 
C37 H45 U9N sing 641 n n 
C38 H46 U9N sing 642 n n 
C38 H47 U9N sing 643 n n 
C39 H48 U9N sing 644 n n 
C39 H49 U9N sing 645 n n 
C40 H50 U9N sing 646 n n 
C40 H51 U9N sing 647 n n 
C41 H52 U9N sing 648 n n 
C41 H53 U9N sing 649 n n 
C42 H54 U9N sing 650 n n 
C42 H55 U9N sing 651 n n 
C43 H56 U9N sing 652 n n 
C43 H57 U9N sing 653 n n 
C44 H58 U9N sing 654 n n 
C44 H59 U9N sing 655 n n 
C45 H60 U9N sing 656 n n 
C45 H61 U9N sing 657 n n 
C46 H62 U9N sing 658 n n 
C46 H63 U9N sing 659 n n 
C47 H64 U9N sing 660 n n 
C47 H65 U9N sing 661 n n 
C47 H66 U9N sing 662 n n 
O1P H67 U9N sing 663 n n 
#
_atom_sites.entry_id                     7NEQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 1001 1001 NAG NAG . 
H 5 U9N A 1 1002 1201 U9N PEE . 
I 6 CLR A 1 1003 1301 CLR CLR . 
J 6 CLR A 1 1004 1401 CLR CLR . 
K 7 R1H B 1 1101 1101 R1H TAR . 
L 4 NAG B 1 1102 1001 NAG NAG . 
M 6 CLR B 1 1103 1101 CLR CLR . 
N 8 HOH A 1 1101 6 HOH HOH . 
N 8 HOH A 2 1102 7 HOH HOH . 
N 8 HOH A 3 1103 11 HOH HOH . 
N 8 HOH A 4 1104 3 HOH HOH . 
N 8 HOH A 5 1105 4 HOH HOH . 
N 8 HOH A 6 1106 2 HOH HOH . 
N 8 HOH A 7 1107 1 HOH HOH . 
N 8 HOH A 8 1108 15 HOH HOH . 
O 8 HOH E 1 301 8 HOH HOH . 
O 8 HOH E 2 302 10 HOH HOH . 
P 8 HOH B 1 1201 12 HOH HOH . 
P 8 HOH B 2 1202 13 HOH HOH . 
P 8 HOH B 3 1203 17 HOH HOH . 
P 8 HOH B 4 1204 14 HOH HOH . 
P 8 HOH B 5 1205 5 HOH HOH . 
P 8 HOH B 6 1206 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 U9N . . . H 5 123.225 146.755 115.545 1 46.7 ? C2 U9N 1002 A 1 
HETATM 2 C C1 U9N . . . H 5 122.71 148.158 115.834 1 46.7 ? C1 U9N 1002 A 1 
HETATM 3 N N U9N . . . H 5 119.298 153.01 111.439 1 46.7 ? N U9N 1002 A 1 
HETATM 4 C C3 U9N . . . H 5 122.123 145.939 114.883 1 46.7 ? C3 U9N 1002 A 1 
HETATM 5 C C4 U9N . . . H 5 121.171 151.785 112.476 1 46.7 ? C4 U9N 1002 A 1 
HETATM 6 C C5 U9N . . . H 5 119.824 151.66 111.774 1 46.7 ? C5 U9N 1002 A 1 
HETATM 7 C C10 U9N . . . H 5 122.498 145.646 117.545 1 46.7 ? C10 U9N 1002 A 1 
HETATM 8 C C11 U9N . . . H 5 122.656 144.433 118.43 1 46.7 ? C11 U9N 1002 A 1 
HETATM 9 C C12 U9N . . . H 5 123.457 144.816 119.669 1 46.7 ? C12 U9N 1002 A 1 
HETATM 10 C C13 U9N . . . H 5 123.51 143.666 120.667 1 46.7 ? C13 U9N 1002 A 1 
HETATM 11 C C14 U9N . . . H 5 124.767 143.751 121.524 1 46.7 ? C14 U9N 1002 A 1 
HETATM 12 C C15 U9N . . . H 5 124.616 142.94 122.807 1 46.7 ? C15 U9N 1002 A 1 
HETATM 13 C C16 U9N . . . H 5 125.951 142.818 123.532 1 46.7 ? C16 U9N 1002 A 1 
HETATM 14 C C17 U9N . . . H 5 126.03 141.521 124.328 1 46.7 ? C17 U9N 1002 A 1 
HETATM 15 C C18 U9N . . . H 5 126.987 141.66 125.506 1 46.7 ? C18 U9N 1002 A 1 
HETATM 16 C C19 U9N . . . H 5 126.309 141.279 126.816 1 46.7 ? C19 U9N 1002 A 1 
HETATM 17 C C30 U9N . . . H 5 124.128 144.933 113.789 1 46.7 ? C30 U9N 1002 A 1 
HETATM 18 C C31 U9N . . . H 5 124.956 143.685 113.992 1 46.7 ? C31 U9N 1002 A 1 
HETATM 19 C C32 U9N . . . H 5 126.096 143.979 114.958 1 46.7 ? C32 U9N 1002 A 1 
HETATM 20 C C33 U9N . . . H 5 125.56 144.286 116.35 1 46.7 ? C33 U9N 1002 A 1 
HETATM 21 C C34 U9N . . . H 5 126.665 144.797 117.265 1 46.7 ? C34 U9N 1002 A 1 
HETATM 22 C C35 U9N . . . H 5 126.477 144.28 118.686 1 46.7 ? C35 U9N 1002 A 1 
HETATM 23 C C36 U9N . . . H 5 127.36 143.068 118.958 1 46.7 ? C36 U9N 1002 A 1 
HETATM 24 C C37 U9N . . . H 5 128.307 142.8 117.794 1 46.7 ? C37 U9N 1002 A 1 
HETATM 25 C C38 U9N . . . H 5 128.422 141.306 117.517 1 46.7 ? C38 U9N 1002 A 1 
HETATM 26 C C39 U9N . . . H 5 129.465 140.662 118.422 1 46.7 ? C39 U9N 1002 A 1 
HETATM 27 C C40 U9N . . . H 5 130.797 141.398 118.337 1 46.7 ? C40 U9N 1002 A 1 
HETATM 28 C C41 U9N . . . H 5 131.889 140.483 117.794 1 46.7 ? C41 U9N 1002 A 1 
HETATM 29 C C42 U9N . . . H 5 133.231 140.771 118.455 1 46.7 ? C42 U9N 1002 A 1 
HETATM 30 C C43 U9N . . . H 5 134.329 139.908 117.847 1 46.7 ? C43 U9N 1002 A 1 
HETATM 31 C C44 U9N . . . H 5 135.241 139.336 118.926 1 46.7 ? C44 U9N 1002 A 1 
HETATM 32 C C45 U9N . . . H 5 135.258 137.813 118.875 1 46.7 ? C45 U9N 1002 A 1 
HETATM 33 C C46 U9N . . . H 5 135.511 137.222 120.257 1 46.7 ? C46 U9N 1002 A 1 
HETATM 34 C C47 U9N . . . H 5 134.367 136.328 120.684 1 46.7 ? C47 U9N 1002 A 1 
HETATM 35 O O4 U9N . . . H 5 121.43 146.231 117.48 1 46.7 ? O4 U9N 1002 A 1 
HETATM 36 O O5 U9N . . . H 5 124.639 145.962 113.38 1 46.7 ? O5 U9N 1002 A 1 
HETATM 37 O O2 U9N . . . H 5 123.626 146.131 116.765 1 46.7 ? O2 U9N 1002 A 1 
HETATM 38 O O3 U9N . . . H 5 122.704 144.917 114.078 1 46.7 ? O3 U9N 1002 A 1 
HETATM 39 O O1P U9N . . . H 5 120.943 150.787 115.407 1 46.7 ? O1P U9N 1002 A 1 
HETATM 40 O O2P U9N . . . H 5 123.432 150.942 114.629 1 46.7 ? O2P U9N 1002 A 1 
HETATM 41 O O3P U9N . . . H 5 122.203 148.735 114.633 1 46.7 ? O3P U9N 1002 A 1 
HETATM 42 O O4P U9N . . . H 5 121.571 150.509 112.97 1 46.7 ? O4P U9N 1002 A 1 
HETATM 43 P P U9N . . . H 5 122.058 150.332 114.495 1 46.7 ? P U9N 1002 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#