data_7NEU # _model_server_result.job_id XdcD3uofT_fiRZ4uVeSH7g _model_server_result.datetime_utc '2024-11-23 15:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7neu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 7NEU # _exptl.entry_id 7NEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NEU _cell.length_a 99.42 _cell.length_b 157.35 _cell.length_c 64.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 155 A CYS 156 1_555 A SG CYS 168 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 227 A CYS 228 1_555 A SG CYS 251 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 242 A CYS 243 1_555 A SG CYS 256 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 21 A ASN 22 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 50 A ASN 51 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? metalc ? metalc1 A OD2 ASP 74 A ASP 75 1_555 D NA NA . A NA 503 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc2 A ND1 HIS 158 A HIS 159 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc3 A OE1 GLU 161 A GLU 162 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A OE2 GLU 161 A GLU 162 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 A ND1 HIS 287 A HIS 288 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc6 B O2 U9K . A U9K 501 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NEU _atom_sites.fract_transf_matrix[1][1] 0.010058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U9K A 1 501 701 U9K 627 . C 3 ZN A 1 502 1002 ZN ZN . D 4 NA A 1 503 1 NA NA . E 5 CL A 1 504 2 CL CL . F 6 EDO A 1 505 1 EDO EDO . G 7 NAG A 1 506 622 NAG NAG . H 7 NAG A 1 507 651 NAG NAG . I 8 HOH A 1 601 1 HOH HOH . I 8 HOH A 2 602 27 HOH HOH . I 8 HOH A 3 603 5 HOH HOH . I 8 HOH A 4 604 9 HOH HOH . I 8 HOH A 5 605 3 HOH HOH . I 8 HOH A 6 606 4 HOH HOH . I 8 HOH A 7 607 11 HOH HOH . I 8 HOH A 8 608 23 HOH HOH . I 8 HOH A 9 609 8 HOH HOH . I 8 HOH A 10 610 13 HOH HOH . I 8 HOH A 11 611 10 HOH HOH . I 8 HOH A 12 612 22 HOH HOH . I 8 HOH A 13 613 6 HOH HOH . I 8 HOH A 14 614 12 HOH HOH . I 8 HOH A 15 615 21 HOH HOH . I 8 HOH A 16 616 19 HOH HOH . I 8 HOH A 17 617 28 HOH HOH . I 8 HOH A 18 618 29 HOH HOH . I 8 HOH A 19 619 15 HOH HOH . I 8 HOH A 20 620 7 HOH HOH . I 8 HOH A 21 621 20 HOH HOH . I 8 HOH A 22 622 26 HOH HOH . I 8 HOH A 23 623 16 HOH HOH . I 8 HOH A 24 624 30 HOH HOH . I 8 HOH A 25 625 25 HOH HOH . I 8 HOH A 26 626 14 HOH HOH . I 8 HOH A 27 627 17 HOH HOH . I 8 HOH A 28 628 2 HOH HOH . I 8 HOH A 29 629 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 -34.655 -10.5 37.805 1 49.45 0 C1 NAG 506 A 1 HETATM 2 C C2 NAG . . . G 7 -35.665 -10.683 38.98 1 51.63 0 C2 NAG 506 A 1 HETATM 3 C C3 NAG . . . G 7 -36.145 -9.378 39.657 1 53.42 0 C3 NAG 506 A 1 HETATM 4 C C4 NAG . . . G 7 -34.978 -8.492 40.101 1 54.7 0 C4 NAG 506 A 1 HETATM 5 C C5 NAG . . . G 7 -33.999 -8.326 38.891 1 53.26 0 C5 NAG 506 A 1 HETATM 6 C C6 NAG . . . G 7 -32.686 -7.59 39.23 1 53.61 0 C6 NAG 506 A 1 HETATM 7 C C7 NAG . . . G 7 -37.014 -12.736 38.986 1 50.75 0 C7 NAG 506 A 1 HETATM 8 C C8 NAG . . . G 7 -38.447 -13.189 38.956 1 51.18 0 C8 NAG 506 A 1 HETATM 9 N N2 NAG . . . G 7 -36.879 -11.447 38.649 1 51.29 0 N2 NAG 506 A 1 HETATM 10 O O3 NAG . . . G 7 -36.964 -9.667 40.8 1 53.94 0 O3 NAG 506 A 1 HETATM 11 O O4 NAG . . . G 7 -35.556 -7.255 40.635 1 56.34 0 O4 NAG 506 A 1 HETATM 12 O O5 NAG . . . G 7 -33.626 -9.593 38.255 1 51.29 0 O5 NAG 506 A 1 HETATM 13 O O6 NAG . . . G 7 -32.07 -7.291 37.956 1 51.86 0 O6 NAG 506 A 1 HETATM 14 O O7 NAG . . . G 7 -36.087 -13.465 39.376 1 49.67 0 O7 NAG 506 A 1 HETATM 15 H H1 NAG . . . G 7 -35.195 -10.046 36.963 1 49.57 0 H1 NAG 506 A 1 HETATM 16 H H2 NAG . . . G 7 -35.124 -11.239 39.759 1 51.76 0 H2 NAG 506 A 1 HETATM 17 H H3 NAG . . . G 7 -36.737 -8.811 38.925 1 53.21 0 H3 NAG 506 A 1 HETATM 18 H H4 NAG . . . G 7 -34.441 -9.015 40.905 1 54.89 0 H4 NAG 506 A 1 HETATM 19 H H5 NAG . . . G 7 -34.523 -7.713 38.144 1 53 0 H5 NAG 506 A 1 HETATM 20 H H61 NAG . . . G 7 -32.035 -8.228 39.832 1 53.58 0 H61 NAG 506 A 1 HETATM 21 H H62 NAG . . . G 7 -32.893 -6.671 39.782 1 54.8 0 H62 NAG 506 A 1 HETATM 22 H H81 NAG . . . G 7 -38.828 -13.1 37.975 1 50.42 0 H81 NAG 506 A 1 HETATM 23 H H82 NAG . . . G 7 -38.504 -14.2 39.267 1 50.91 0 H82 NAG 506 A 1 HETATM 24 H H83 NAG . . . G 7 -39.02 -12.586 39.612 1 52.24 0 H83 NAG 506 A 1 HETATM 25 H HN2 NAG . . . G 7 -37.671 -10.926 38.312 1 51.47 0 HN2 NAG 506 A 1 HETATM 26 H HO3 NAG . . . G 7 -37.354 -8.784 41.09 0 30 0 HO3 NAG 506 A 1 HETATM 27 H HO4 NAG . . . G 7 -34.936 -6.601 40.868 0 30 0 HO4 NAG 506 A 1 HETATM 28 H HO6 NAG . . . G 7 -31.104 -6.795 38.432 0 30 0 HO6 NAG 506 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 609 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 28 #