data_7NEZ
#
_model_server_result.job_id            feDYQbuNcgJfev6x3ReeaQ 
_model_server_result.datetime_utc      '2024-12-22 02:01:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1201}' 
#
_entry.id    7NEZ 
#
_exptl.entry_id    7NEZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              421.446 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            "(S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NEZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 592 A CYS 592 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 603 A CYS 603 1_555 B SG CYS 603 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 592 B CYS 592 1_555 B SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C23 H23 N3 O5' 
_chem_comp.formula_weight    421.446 
_chem_comp.id                TTC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TOPOTECAN, HYCAMTIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C31 TTC sing 362 n n 
C25 C21 TTC sing 363 n n 
C25 H251 TTC sing 364 n n 
C25 H252 TTC sing 365 n n 
C31 H311 TTC sing 366 n n 
C31 H312 TTC sing 367 n n 
C31 H313 TTC sing 368 n n 
C21 O24 TTC sing 369 n n 
C21 C16 TTC sing 370 n n 
C21 C20 TTC sing 371 n n 
O24 H241 TTC sing 372 n n 
C16 C15 TTC doub 373 n y 
C16 C17 TTC sing 374 n y 
C20 O23 TTC doub 375 n n 
C20 O22 TTC sing 376 n n 
C15 C14 TTC sing 377 n y 
C15 C19 TTC sing 378 n n 
C17 C13 TTC doub 379 n y 
C17 H171 TTC sing 380 n n 
O22 C19 TTC sing 381 n n 
C14 O18 TTC doub 382 n n 
C14 N12 TTC sing 383 n y 
C19 H191 TTC sing 384 n n 
C19 H192 TTC sing 385 n n 
C13 N12 TTC sing 386 n y 
C13 C9 TTC sing 387 n y 
N12 C11 TTC sing 388 n n 
C9 C8 TTC doub 389 n y 
C9 N10 TTC sing 390 n y 
C11 C8 TTC sing 391 n n 
C11 H111 TTC sing 392 n n 
C11 H112 TTC sing 393 n n 
C8 C7 TTC sing 394 n y 
N10 C5 TTC doub 395 n y 
C7 C6 TTC doub 396 n y 
C7 H71 TTC sing 397 n n 
C5 C6 TTC sing 398 n y 
C5 C4 TTC sing 399 n y 
C6 C1 TTC sing 400 n y 
C4 C3 TTC doub 401 n y 
C4 H41 TTC sing 402 n n 
C1 C2 TTC doub 403 n y 
C1 C27 TTC sing 404 n n 
C3 C2 TTC sing 405 n y 
C3 H31 TTC sing 406 n n 
C2 O26 TTC sing 407 n n 
C27 N28 TTC sing 408 n n 
C27 H271 TTC sing 409 n n 
C27 H272 TTC sing 410 n n 
N28 C29 TTC sing 411 n n 
N28 C30 TTC sing 412 n n 
C29 H291 TTC sing 413 n n 
C29 H292 TTC sing 414 n n 
C29 H293 TTC sing 415 n n 
C30 H301 TTC sing 416 n n 
C30 H302 TTC sing 417 n n 
C30 H303 TTC sing 418 n n 
O26 H261 TTC sing 419 n n 
#
_atom_sites.entry_id                     7NEZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 TTC A 1 1201 1201 TTC LIG . 
H 5 NAG A 1 1202 1 NAG NAG . 
I 5 NAG B 1 701 1 NAG NAG . 
J 5 NAG B 1 702 2 NAG NAG . 
K 5 NAG D 1 301 2 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 TTC . . . G 4 124.898 127.095 125.617 1 20 ? C25 TTC 1201 A 1 
HETATM 2 C C31 TTC . . . G 4 126.169 127.073 126.655 1 20 ? C31 TTC 1201 A 1 
HETATM 3 C C21 TTC . . . G 4 124.697 125.726 124.799 1 20 ? C21 TTC 1201 A 1 
HETATM 4 O O24 TTC . . . G 4 125.737 124.777 125.296 1 20 ? O24 TTC 1201 A 1 
HETATM 5 C C16 TTC . . . G 4 125.05 125.925 123.349 1 20 ? C16 TTC 1201 A 1 
HETATM 6 C C20 TTC . . . G 4 123.214 125.043 125.058 1 20 ? C20 TTC 1201 A 1 
HETATM 7 C C15 TTC . . . G 4 124.076 125.499 122.212 1 20 ? C15 TTC 1201 A 1 
HETATM 8 C C17 TTC . . . G 4 126.518 126.561 122.983 1 20 ? C17 TTC 1201 A 1 
HETATM 9 O O23 TTC . . . G 4 122.967 124.402 126.079 1 20 ? O23 TTC 1201 A 1 
HETATM 10 O O22 TTC . . . G 4 122.201 125.255 123.988 1 20 ? O22 TTC 1201 A 1 
HETATM 11 C C14 TTC . . . G 4 124.468 125.692 120.641 1 20 ? C14 TTC 1201 A 1 
HETATM 12 C C19 TTC . . . G 4 122.664 124.881 122.549 1 20 ? C19 TTC 1201 A 1 
HETATM 13 C C13 TTC . . . G 4 126.805 126.707 121.445 1 20 ? C13 TTC 1201 A 1 
HETATM 14 O O18 TTC . . . G 4 123.703 125.369 119.697 1 20 ? O18 TTC 1201 A 1 
HETATM 15 N N12 TTC . . . G 4 125.837 126.294 120.378 1 20 ? N12 TTC 1201 A 1 
HETATM 16 C C9 TTC . . . G 4 128.153 127.301 120.747 1 20 ? C9 TTC 1201 A 1 
HETATM 17 C C11 TTC . . . G 4 126.485 126.594 119.008 1 20 ? C11 TTC 1201 A 1 
HETATM 18 C C8 TTC . . . G 4 127.963 127.233 119.334 1 20 ? C8 TTC 1201 A 1 
HETATM 19 N N10 TTC . . . G 4 129.344 127.812 121.396 1 20 ? N10 TTC 1201 A 1 
HETATM 20 C C7 TTC . . . G 4 129.067 127.724 118.458 1 20 ? C7 TTC 1201 A 1 
HETATM 21 C C5 TTC . . . G 4 130.409 128.287 120.591 1 20 ? C5 TTC 1201 A 1 
HETATM 22 C C6 TTC . . . G 4 130.333 128.271 119.147 1 20 ? C6 TTC 1201 A 1 
HETATM 23 C C4 TTC . . . G 4 131.651 128.821 121.311 1 20 ? C4 TTC 1201 A 1 
HETATM 24 C C1 TTC . . . G 4 131.524 128.81 118.32 1 20 ? C1 TTC 1201 A 1 
HETATM 25 C C3 TTC . . . G 4 132.773 129.323 120.53 1 20 ? C3 TTC 1201 A 1 
HETATM 26 C C2 TTC . . . G 4 132.707 129.312 119.004 1 20 ? C2 TTC 1201 A 1 
HETATM 27 C C27 TTC . . . G 4 131.448 128.787 116.665 1 20 ? C27 TTC 1201 A 1 
HETATM 28 N N28 TTC . . . G 4 131.204 127.349 116.162 1 20 ? N28 TTC 1201 A 1 
HETATM 29 C C29 TTC . . . G 4 132.423 126.484 116.415 1 20 ? C29 TTC 1201 A 1 
HETATM 30 C C30 TTC . . . G 4 130.893 127.342 114.673 1 20 ? C30 TTC 1201 A 1 
HETATM 31 O O26 TTC . . . G 4 133.855 129.82 118.259 1 20 ? O26 TTC 1201 A 1 
HETATM 32 H H251 TTC . . . G 4 125.049 127.901 124.916 1 20 ? H251 TTC 1201 A 1 
HETATM 33 H H252 TTC . . . G 4 123.993 127.295 126.179 1 20 ? H252 TTC 1201 A 1 
HETATM 34 H H311 TTC . . . G 4 126.052 126.271 127.374 1 20 ? H311 TTC 1201 A 1 
HETATM 35 H H312 TTC . . . G 4 127.097 126.944 126.113 1 20 ? H312 TTC 1201 A 1 
HETATM 36 H H313 TTC . . . G 4 126.203 128.016 127.186 1 20 ? H313 TTC 1201 A 1 
HETATM 37 H H241 TTC . . . G 4 125.914 124.14 124.624 1 20 ? H241 TTC 1201 A 1 
HETATM 38 H H171 TTC . . . G 4 127.237 126.862 123.732 1 20 ? H171 TTC 1201 A 1 
HETATM 39 H H191 TTC . . . G 4 122.719 123.806 122.464 1 20 ? H191 TTC 1201 A 1 
HETATM 40 H H192 TTC . . . G 4 121.936 125.262 121.844 1 20 ? H192 TTC 1201 A 1 
HETATM 41 H H111 TTC . . . G 4 126.598 125.676 118.444 1 20 ? H111 TTC 1201 A 1 
HETATM 42 H H112 TTC . . . G 4 125.884 127.308 118.459 1 20 ? H112 TTC 1201 A 1 
HETATM 43 H H71 TTC . . . G 4 128.954 127.695 117.384 1 20 ? H71 TTC 1201 A 1 
HETATM 44 H H41 TTC . . . G 4 131.688 128.824 122.392 1 20 ? H41 TTC 1201 A 1 
HETATM 45 H H31 TTC . . . G 4 133.656 129.701 121.029 1 20 ? H31 TTC 1201 A 1 
HETATM 46 H H271 TTC . . . G 4 132.367 129.164 116.237 1 20 ? H271 TTC 1201 A 1 
HETATM 47 H H272 TTC . . . G 4 130.631 129.423 116.348 1 20 ? H272 TTC 1201 A 1 
HETATM 48 H H291 TTC . . . G 4 132.244 125.501 116.001 1 20 ? H291 TTC 1201 A 1 
HETATM 49 H H292 TTC . . . G 4 132.596 126.402 117.479 1 20 ? H292 TTC 1201 A 1 
HETATM 50 H H293 TTC . . . G 4 133.294 126.923 115.945 1 20 ? H293 TTC 1201 A 1 
HETATM 51 H H301 TTC . . . G 4 130.648 126.335 114.357 1 20 ? H301 TTC 1201 A 1 
HETATM 52 H H302 TTC . . . G 4 130.05 127.992 114.474 1 20 ? H302 TTC 1201 A 1 
HETATM 53 H H303 TTC . . . G 4 131.756 127.693 114.122 1 20 ? H303 TTC 1201 A 1 
HETATM 54 H H261 TTC . . . G 4 133.693 130.715 118.009 1 20 ? H261 TTC 1201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#