data_7NFF # _model_server_result.job_id Ma4X_V9EcPqW_PGLtdTblQ _model_server_result.datetime_utc '2024-12-02 16:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7NFF # _exptl.entry_id 7NFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NFF _cell.length_a 47.435 _cell.length_b 47.435 _cell.length_c 127.515 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 94.87 94.87 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 94.87 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 94.87 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 65 n n C1 C2 GOL sing 66 n n C1 H11 GOL sing 67 n n C1 H12 GOL sing 68 n n O1 HO1 GOL sing 69 n n C2 O2 GOL sing 70 n n C2 C3 GOL sing 71 n n C2 H2 GOL sing 72 n n O2 HO2 GOL sing 73 n n C3 O3 GOL sing 74 n n C3 H31 GOL sing 75 n n C3 H32 GOL sing 76 n n O3 HO3 GOL sing 77 n n # _atom_sites.entry_id 7NFF _atom_sites.fract_transf_matrix[1][1] 0.021081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 101 1 TRS TRS . D 3 GOL A 1 102 2 GOL GOL . E 3 GOL A 1 103 4 GOL GOL . F 3 GOL B 1 101 3 GOL GOL . G 4 HOH A 1 201 19 HOH HOH . G 4 HOH A 2 202 12 HOH HOH . G 4 HOH A 3 203 26 HOH HOH . G 4 HOH A 4 204 27 HOH HOH . G 4 HOH A 5 205 30 HOH HOH . G 4 HOH A 6 206 4 HOH HOH . G 4 HOH A 7 207 8 HOH HOH . G 4 HOH A 8 208 28 HOH HOH . G 4 HOH A 9 209 5 HOH HOH . G 4 HOH A 10 210 24 HOH HOH . G 4 HOH A 11 211 3 HOH HOH . G 4 HOH A 12 212 10 HOH HOH . G 4 HOH A 13 213 23 HOH HOH . G 4 HOH A 14 214 14 HOH HOH . G 4 HOH A 15 215 18 HOH HOH . G 4 HOH A 16 216 25 HOH HOH . G 4 HOH A 17 217 21 HOH HOH . G 4 HOH A 18 218 34 HOH HOH . G 4 HOH A 19 219 13 HOH HOH . H 4 HOH B 1 201 33 HOH HOH . H 4 HOH B 2 202 20 HOH HOH . H 4 HOH B 3 203 6 HOH HOH . H 4 HOH B 4 204 7 HOH HOH . H 4 HOH B 5 205 17 HOH HOH . H 4 HOH B 6 206 15 HOH HOH . H 4 HOH B 7 207 31 HOH HOH . H 4 HOH B 8 208 2 HOH HOH . H 4 HOH B 9 209 11 HOH HOH . H 4 HOH B 10 210 9 HOH HOH . H 4 HOH B 11 211 35 HOH HOH . H 4 HOH B 12 212 32 HOH HOH . H 4 HOH B 13 213 29 HOH HOH . H 4 HOH B 14 214 16 HOH HOH . H 4 HOH B 15 215 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 47.091 45.964 150.67 0.25 23.83 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . F 3 45.9 45.527 150.01 0.25 27.71 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . F 3 47.453 47.405 150.323 0.25 21.76 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . F 3 46.396 48.287 150.662 0.25 25.8 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . F 3 48.733 47.867 150.995 0.25 24.79 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . F 3 49.864 47.741 150.142 0.25 30.51 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #