data_7NFG
#
_model_server_result.job_id            TO93RVdZv2I2xuGGqcZAgg 
_model_server_result.datetime_utc      '2025-03-13 19:54:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    7NFG 
#
_exptl.entry_id    7NFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NFG 
_cell.length_a            31.67 
_cell.length_b            57.24 
_cell.length_c            91.77 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale2 A C GLY 31 A GLY 30 1_555 A N NH2 32 A NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.246 ? 
covale ? covale3 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
covale ? covale4 C C ACE 1 C ACE 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
covale ? covale5 C C GLY 31 C GLY 30 1_555 C N NH2 32 C NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? 
covale ? covale6 D C GLY 31 D GLY 30 1_555 D N NH2 32 D NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? 
covale ? covale7 E C GLY 31 E GLY 30 1_555 E N NH2 32 E NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale8 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale9 F C GLY 31 F GLY 30 1_555 F N NH2 32 F NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 133 n n 
C1 H1C1 MRD sing 134 n n 
C1 H1C2 MRD sing 135 n n 
C1 H1C3 MRD sing 136 n n 
C2 O2 MRD sing 137 n n 
C2 CM MRD sing 138 n n 
C2 C3 MRD sing 139 n n 
O2 H2 MRD sing 140 n n 
CM HMC1 MRD sing 141 n n 
CM HMC2 MRD sing 142 n n 
CM HMC3 MRD sing 143 n n 
C3 C4 MRD sing 144 n n 
C3 H3C1 MRD sing 145 n n 
C3 H3C2 MRD sing 146 n n 
C4 O4 MRD sing 147 n n 
C4 C5 MRD sing 148 n n 
C4 H4 MRD sing 149 n n 
O4 HA MRD sing 150 n n 
C5 H5C1 MRD sing 151 n n 
C5 H5C2 MRD sing 152 n n 
C5 H5C3 MRD sing 153 n n 
#
_atom_sites.entry_id                     7NFG 
_atom_sites.fract_transf_matrix[1][1]    0.031576 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MRD F 1 101 1 MRD MRD . 
H 3 HOH A 1 101 100 HOH HOH . 
H 3 HOH A 2 102 78 HOH HOH . 
H 3 HOH A 3 103 62 HOH HOH . 
H 3 HOH A 4 104 1 HOH HOH . 
H 3 HOH A 5 105 117 HOH HOH . 
H 3 HOH A 6 106 29 HOH HOH . 
H 3 HOH A 7 107 116 HOH HOH . 
H 3 HOH A 8 108 21 HOH HOH . 
H 3 HOH A 9 109 11 HOH HOH . 
H 3 HOH A 10 110 20 HOH HOH . 
H 3 HOH A 11 111 129 HOH HOH . 
H 3 HOH A 12 112 80 HOH HOH . 
H 3 HOH A 13 113 55 HOH HOH . 
H 3 HOH A 14 114 99 HOH HOH . 
H 3 HOH A 15 115 82 HOH HOH . 
H 3 HOH A 16 116 8 HOH HOH . 
H 3 HOH A 17 117 25 HOH HOH . 
H 3 HOH A 18 118 36 HOH HOH . 
H 3 HOH A 19 119 79 HOH HOH . 
H 3 HOH A 20 120 89 HOH HOH . 
H 3 HOH A 21 121 142 HOH HOH . 
H 3 HOH A 22 122 104 HOH HOH . 
H 3 HOH A 23 123 119 HOH HOH . 
H 3 HOH A 24 124 122 HOH HOH . 
H 3 HOH A 25 125 56 HOH HOH . 
H 3 HOH A 26 126 149 HOH HOH . 
H 3 HOH A 27 127 168 HOH HOH . 
H 3 HOH A 28 128 163 HOH HOH . 
H 3 HOH A 29 129 165 HOH HOH . 
I 3 HOH B 1 101 105 HOH HOH . 
I 3 HOH B 2 102 152 HOH HOH . 
I 3 HOH B 3 103 38 HOH HOH . 
I 3 HOH B 4 104 22 HOH HOH . 
I 3 HOH B 5 105 101 HOH HOH . 
I 3 HOH B 6 106 24 HOH HOH . 
I 3 HOH B 7 107 45 HOH HOH . 
I 3 HOH B 8 108 94 HOH HOH . 
I 3 HOH B 9 109 46 HOH HOH . 
I 3 HOH B 10 110 5 HOH HOH . 
I 3 HOH B 11 111 84 HOH HOH . 
I 3 HOH B 12 112 23 HOH HOH . 
I 3 HOH B 13 113 75 HOH HOH . 
I 3 HOH B 14 114 95 HOH HOH . 
I 3 HOH B 15 115 143 HOH HOH . 
I 3 HOH B 16 116 161 HOH HOH . 
I 3 HOH B 17 117 47 HOH HOH . 
I 3 HOH B 18 118 133 HOH HOH . 
I 3 HOH B 19 119 145 HOH HOH . 
I 3 HOH B 20 120 153 HOH HOH . 
I 3 HOH B 21 121 160 HOH HOH . 
I 3 HOH B 22 122 98 HOH HOH . 
I 3 HOH B 23 123 128 HOH HOH . 
I 3 HOH B 24 124 170 HOH HOH . 
J 3 HOH C 1 101 155 HOH HOH . 
J 3 HOH C 2 102 15 HOH HOH . 
J 3 HOH C 3 103 39 HOH HOH . 
J 3 HOH C 4 104 83 HOH HOH . 
J 3 HOH C 5 105 26 HOH HOH . 
J 3 HOH C 6 106 49 HOH HOH . 
J 3 HOH C 7 107 34 HOH HOH . 
J 3 HOH C 8 108 50 HOH HOH . 
J 3 HOH C 9 109 127 HOH HOH . 
J 3 HOH C 10 110 88 HOH HOH . 
J 3 HOH C 11 111 61 HOH HOH . 
J 3 HOH C 12 112 106 HOH HOH . 
J 3 HOH C 13 113 107 HOH HOH . 
J 3 HOH C 14 114 138 HOH HOH . 
J 3 HOH C 15 115 115 HOH HOH . 
J 3 HOH C 16 116 69 HOH HOH . 
J 3 HOH C 17 117 141 HOH HOH . 
J 3 HOH C 18 118 151 HOH HOH . 
J 3 HOH C 19 119 113 HOH HOH . 
J 3 HOH C 20 120 4 HOH HOH . 
J 3 HOH C 21 121 112 HOH HOH . 
J 3 HOH C 22 122 114 HOH HOH . 
J 3 HOH C 23 123 66 HOH HOH . 
J 3 HOH C 24 124 134 HOH HOH . 
J 3 HOH C 25 125 166 HOH HOH . 
K 3 HOH D 1 101 156 HOH HOH . 
K 3 HOH D 2 102 140 HOH HOH . 
K 3 HOH D 3 103 74 HOH HOH . 
K 3 HOH D 4 104 93 HOH HOH . 
K 3 HOH D 5 105 68 HOH HOH . 
K 3 HOH D 6 106 30 HOH HOH . 
K 3 HOH D 7 107 41 HOH HOH . 
K 3 HOH D 8 108 118 HOH HOH . 
K 3 HOH D 9 109 3 HOH HOH . 
K 3 HOH D 10 110 7 HOH HOH . 
K 3 HOH D 11 111 35 HOH HOH . 
K 3 HOH D 12 112 37 HOH HOH . 
K 3 HOH D 13 113 90 HOH HOH . 
K 3 HOH D 14 114 27 HOH HOH . 
K 3 HOH D 15 115 109 HOH HOH . 
K 3 HOH D 16 116 54 HOH HOH . 
K 3 HOH D 17 117 146 HOH HOH . 
K 3 HOH D 18 118 53 HOH HOH . 
K 3 HOH D 19 119 131 HOH HOH . 
K 3 HOH D 20 120 125 HOH HOH . 
K 3 HOH D 21 121 108 HOH HOH . 
K 3 HOH D 22 122 16 HOH HOH . 
K 3 HOH D 23 123 64 HOH HOH . 
K 3 HOH D 24 124 147 HOH HOH . 
K 3 HOH D 25 125 167 HOH HOH . 
K 3 HOH D 26 126 169 HOH HOH . 
L 3 HOH E 1 101 144 HOH HOH . 
L 3 HOH E 2 102 58 HOH HOH . 
L 3 HOH E 3 103 67 HOH HOH . 
L 3 HOH E 4 104 73 HOH HOH . 
L 3 HOH E 5 105 158 HOH HOH . 
L 3 HOH E 6 106 76 HOH HOH . 
L 3 HOH E 7 107 92 HOH HOH . 
L 3 HOH E 8 108 42 HOH HOH . 
L 3 HOH E 9 109 28 HOH HOH . 
L 3 HOH E 10 110 18 HOH HOH . 
L 3 HOH E 11 111 31 HOH HOH . 
L 3 HOH E 12 112 52 HOH HOH . 
L 3 HOH E 13 113 2 HOH HOH . 
L 3 HOH E 14 114 91 HOH HOH . 
L 3 HOH E 15 115 63 HOH HOH . 
L 3 HOH E 16 116 103 HOH HOH . 
L 3 HOH E 17 117 13 HOH HOH . 
L 3 HOH E 18 118 12 HOH HOH . 
L 3 HOH E 19 119 81 HOH HOH . 
L 3 HOH E 20 120 60 HOH HOH . 
L 3 HOH E 21 121 51 HOH HOH . 
L 3 HOH E 22 122 17 HOH HOH . 
L 3 HOH E 23 123 14 HOH HOH . 
L 3 HOH E 24 124 77 HOH HOH . 
L 3 HOH E 25 125 137 HOH HOH . 
L 3 HOH E 26 126 86 HOH HOH . 
L 3 HOH E 27 127 87 HOH HOH . 
L 3 HOH E 28 128 65 HOH HOH . 
L 3 HOH E 29 129 97 HOH HOH . 
L 3 HOH E 30 130 150 HOH HOH . 
L 3 HOH E 31 131 157 HOH HOH . 
L 3 HOH E 32 132 148 HOH HOH . 
L 3 HOH E 33 133 130 HOH HOH . 
L 3 HOH E 34 134 154 HOH HOH . 
L 3 HOH E 35 135 172 HOH HOH . 
M 3 HOH F 1 201 96 HOH HOH . 
M 3 HOH F 2 202 124 HOH HOH . 
M 3 HOH F 3 203 40 HOH HOH . 
M 3 HOH F 4 204 57 HOH HOH . 
M 3 HOH F 5 205 33 HOH HOH . 
M 3 HOH F 6 206 10 HOH HOH . 
M 3 HOH F 7 207 43 HOH HOH . 
M 3 HOH F 8 208 32 HOH HOH . 
M 3 HOH F 9 209 19 HOH HOH . 
M 3 HOH F 10 210 59 HOH HOH . 
M 3 HOH F 11 211 71 HOH HOH . 
M 3 HOH F 12 212 48 HOH HOH . 
M 3 HOH F 13 213 9 HOH HOH . 
M 3 HOH F 14 214 70 HOH HOH . 
M 3 HOH F 15 215 6 HOH HOH . 
M 3 HOH F 16 216 72 HOH HOH . 
M 3 HOH F 17 217 111 HOH HOH . 
M 3 HOH F 18 218 139 HOH HOH . 
M 3 HOH F 19 219 126 HOH HOH . 
M 3 HOH F 20 220 44 HOH HOH . 
M 3 HOH F 21 221 136 HOH HOH . 
M 3 HOH F 22 222 123 HOH HOH . 
M 3 HOH F 23 223 85 HOH HOH . 
M 3 HOH F 24 224 132 HOH HOH . 
M 3 HOH F 25 225 121 HOH HOH . 
M 3 HOH F 26 226 110 HOH HOH . 
M 3 HOH F 27 227 159 HOH HOH . 
M 3 HOH F 28 228 135 HOH HOH . 
M 3 HOH F 29 229 102 HOH HOH . 
M 3 HOH F 30 230 120 HOH HOH . 
M 3 HOH F 31 231 171 HOH HOH . 
M 3 HOH F 32 232 162 HOH HOH . 
M 3 HOH F 33 233 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . G 2 -37.053 54.442 113.952 1 24.15 ? C1 MRD 101 F 1 
HETATM 2 C C2 MRD . . . G 2 -35.996 53.337 113.83 1 21.4 ? C2 MRD 101 F 1 
HETATM 3 O O2 MRD . . . G 2 -36.429 52.35 112.864 1 30.7 ? O2 MRD 101 F 1 
HETATM 4 C CM MRD . . . G 2 -34.714 53.792 113.207 1 22.61 ? CM MRD 101 F 1 
HETATM 5 C C3 MRD . . . G 2 -35.679 52.727 115.202 1 23.7 ? C3 MRD 101 F 1 
HETATM 6 C C4 MRD . . . G 2 -34.54 51.823 115.341 1 23.53 ? C4 MRD 101 F 1 
HETATM 7 O O4 MRD . . . G 2 -34.652 50.785 114.341 1 30.94 ? O4 MRD 101 F 1 
HETATM 8 C C5 MRD . . . G 2 -34.377 51.279 116.712 1 28.02 ? C5 MRD 101 F 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#