data_7NFH # _model_server_result.job_id HytCA5TuHg9VX3tMSk6xQA _model_server_result.datetime_utc '2025-03-12 05:07:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 7NFH # _exptl.entry_id 7NFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NFH _cell.length_a 77.92 _cell.length_b 77.92 _cell.length_c 100.02 _cell.Z_PDB 42 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 C C ACE 1 C ACE 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale5 D C GLY 31 D GLY 30 1_555 D N NH2 32 D NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? covale ? covale6 E C ACE 1 E ACE 0 1_555 E N GLY 2 E GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 G C ACE 1 G ACE 0 1_555 G N GLY 2 G GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 112 n n O1 C6 MES sing 113 n n C2 C3 MES sing 114 n n C2 H21 MES sing 115 n n C2 H22 MES sing 116 n n C3 N4 MES sing 117 n n C3 H31 MES sing 118 n n C3 H32 MES sing 119 n n N4 C5 MES sing 120 n n N4 C7 MES sing 121 n n N4 HN4 MES sing 122 n n C5 C6 MES sing 123 n n C5 H51 MES sing 124 n n C5 H52 MES sing 125 n n C6 H61 MES sing 126 n n C6 H62 MES sing 127 n n C7 C8 MES sing 128 n n C7 H71 MES sing 129 n n C7 H72 MES sing 130 n n C8 S MES sing 131 n n C8 H81 MES sing 132 n n C8 H82 MES sing 133 n n S O1S MES doub 134 n n S O2S MES doub 135 n n S O3S MES sing 136 n n # _atom_sites.entry_id 7NFH _atom_sites.fract_transf_matrix[1][1] 0.012834 _atom_sites.fract_transf_matrix[1][2] 0.00741 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MES A 1 101 1 MES MES . I 2 MES A 1 102 4 MES MES . J 2 MES C 1 101 2 MES MES . K 2 MES D 1 101 3 MES MES . L 2 MES F 1 101 5 MES MES . M 3 HOH A 1 201 45 HOH HOH . M 3 HOH A 2 202 31 HOH HOH . M 3 HOH A 3 203 34 HOH HOH . M 3 HOH A 4 204 18 HOH HOH . M 3 HOH A 5 205 76 HOH HOH . M 3 HOH A 6 206 49 HOH HOH . M 3 HOH A 7 207 47 HOH HOH . M 3 HOH A 8 208 69 HOH HOH . M 3 HOH A 9 209 9 HOH HOH . M 3 HOH A 10 210 89 HOH HOH . M 3 HOH A 11 211 52 HOH HOH . M 3 HOH A 12 212 67 HOH HOH . M 3 HOH A 13 213 62 HOH HOH . N 3 HOH B 1 101 71 HOH HOH . N 3 HOH B 2 102 22 HOH HOH . N 3 HOH B 3 103 21 HOH HOH . N 3 HOH B 4 104 73 HOH HOH . N 3 HOH B 5 105 85 HOH HOH . N 3 HOH B 6 106 1 HOH HOH . N 3 HOH B 7 107 28 HOH HOH . N 3 HOH B 8 108 15 HOH HOH . N 3 HOH B 9 109 77 HOH HOH . N 3 HOH B 10 110 55 HOH HOH . N 3 HOH B 11 111 11 HOH HOH . N 3 HOH B 12 112 59 HOH HOH . N 3 HOH B 13 113 53 HOH HOH . N 3 HOH B 14 114 46 HOH HOH . N 3 HOH B 15 115 20 HOH HOH . N 3 HOH B 16 116 39 HOH HOH . N 3 HOH B 17 117 13 HOH HOH . N 3 HOH B 18 118 68 HOH HOH . N 3 HOH B 19 119 63 HOH HOH . O 3 HOH C 1 201 93 HOH HOH . O 3 HOH C 2 202 14 HOH HOH . O 3 HOH C 3 203 25 HOH HOH . O 3 HOH C 4 204 19 HOH HOH . O 3 HOH C 5 205 88 HOH HOH . O 3 HOH C 6 206 66 HOH HOH . O 3 HOH C 7 207 33 HOH HOH . O 3 HOH C 8 208 37 HOH HOH . O 3 HOH C 9 209 44 HOH HOH . O 3 HOH C 10 210 90 HOH HOH . O 3 HOH C 11 211 36 HOH HOH . O 3 HOH C 12 212 27 HOH HOH . O 3 HOH C 13 213 64 HOH HOH . O 3 HOH C 14 214 50 HOH HOH . P 3 HOH D 1 201 43 HOH HOH . P 3 HOH D 2 202 48 HOH HOH . P 3 HOH D 3 203 78 HOH HOH . P 3 HOH D 4 204 65 HOH HOH . P 3 HOH D 5 205 60 HOH HOH . P 3 HOH D 6 206 5 HOH HOH . P 3 HOH D 7 207 3 HOH HOH . P 3 HOH D 8 208 26 HOH HOH . P 3 HOH D 9 209 79 HOH HOH . P 3 HOH D 10 210 80 HOH HOH . P 3 HOH D 11 211 2 HOH HOH . P 3 HOH D 12 212 54 HOH HOH . P 3 HOH D 13 213 94 HOH HOH . P 3 HOH D 14 214 30 HOH HOH . Q 3 HOH E 1 101 32 HOH HOH . Q 3 HOH E 2 102 17 HOH HOH . Q 3 HOH E 3 103 29 HOH HOH . Q 3 HOH E 4 104 92 HOH HOH . Q 3 HOH E 5 105 35 HOH HOH . Q 3 HOH E 6 106 16 HOH HOH . Q 3 HOH E 7 107 51 HOH HOH . Q 3 HOH E 8 108 58 HOH HOH . Q 3 HOH E 9 109 8 HOH HOH . Q 3 HOH E 10 110 75 HOH HOH . Q 3 HOH E 11 111 74 HOH HOH . Q 3 HOH E 12 112 56 HOH HOH . R 3 HOH F 1 201 10 HOH HOH . R 3 HOH F 2 202 86 HOH HOH . R 3 HOH F 3 203 81 HOH HOH . R 3 HOH F 4 204 12 HOH HOH . R 3 HOH F 5 205 87 HOH HOH . R 3 HOH F 6 206 7 HOH HOH . R 3 HOH F 7 207 83 HOH HOH . R 3 HOH F 8 208 38 HOH HOH . R 3 HOH F 9 209 82 HOH HOH . S 3 HOH G 1 101 91 HOH HOH . S 3 HOH G 2 102 57 HOH HOH . S 3 HOH G 3 103 24 HOH HOH . S 3 HOH G 4 104 41 HOH HOH . S 3 HOH G 5 105 40 HOH HOH . S 3 HOH G 6 106 42 HOH HOH . S 3 HOH G 7 107 61 HOH HOH . S 3 HOH G 8 108 4 HOH HOH . S 3 HOH G 9 109 23 HOH HOH . S 3 HOH G 10 110 84 HOH HOH . S 3 HOH G 11 111 6 HOH HOH . S 3 HOH G 12 112 70 HOH HOH . S 3 HOH G 13 113 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . A . H 2 5.921 51.894 15.876 0.25 31.3 ? O1 MES 101 A 1 HETATM 2 O O1 MES . B . H 2 7.871 52.874 19.012 0.25 26.63 ? O1 MES 101 A 1 HETATM 3 O O1 MES . C . H 2 9.004 53.556 14.349 0.25 24.23 ? O1 MES 101 A 1 HETATM 4 O O1 MES . D . H 2 10.016 54.313 17.878 0.25 35.41 ? O1 MES 101 A 1 HETATM 5 C C2 MES . A . H 2 6.029 52.623 17.091 0.25 33.94 ? C2 MES 101 A 1 HETATM 6 C C2 MES . B . H 2 8.257 54.094 18.404 0.25 26.85 ? C2 MES 101 A 1 HETATM 7 C C2 MES . C . H 2 7.6 53.606 14.546 0.25 28 ? C2 MES 101 A 1 HETATM 8 C C2 MES . D . H 2 9.129 53.534 18.673 0.25 34.17 ? C2 MES 101 A 1 HETATM 9 C C3 MES . A . H 2 7.467 52.816 17.509 0.25 40.25 ? C3 MES 101 A 1 HETATM 10 C C3 MES . B . H 2 8.335 53.933 16.905 0.25 32.73 ? C3 MES 101 A 1 HETATM 11 C C3 MES . C . H 2 7.209 53.1 15.909 0.25 33.23 ? C3 MES 101 A 1 HETATM 12 C C3 MES . D . H 2 7.677 53.842 18.394 0.25 34.63 ? C3 MES 101 A 1 HETATM 13 N N4 MES . A . H 2 8.357 52.789 16.299 0.25 39.8 ? N4 MES 101 A 1 HETATM 14 N N4 MES . B . H 2 7.899 52.545 16.533 0.25 33.43 ? N4 MES 101 A 1 HETATM 15 N N4 MES . C . H 2 8.426 52.994 16.783 0.25 33.77 ? N4 MES 101 A 1 HETATM 16 N N4 MES . D . H 2 7.304 53.445 16.998 0.25 41.48 ? N4 MES 101 A 1 HETATM 17 C C5 MES . A . H 2 7.639 53.457 15.168 0.25 35.31 ? C5 MES 101 A 1 HETATM 18 C C5 MES . B . H 2 6.533 52.294 17.094 0.25 32.2 ? C5 MES 101 A 1 HETATM 19 C C5 MES . C . H 2 9.234 54.252 16.646 0.25 31.51 ? C5 MES 101 A 1 HETATM 20 C C5 MES . D . H 2 8.465 53.726 16.088 0.25 41.98 ? C5 MES 101 A 1 HETATM 21 C C6 MES . A . H 2 6.423 52.65 14.784 0.25 30.45 ? C6 MES 101 A 1 HETATM 22 C C6 MES . B . H 2 6.569 52.507 18.584 0.25 26.29 ? C6 MES 101 A 1 HETATM 23 C C6 MES . C . H 2 9.651 54.47 15.215 0.25 24.74 ? C6 MES 101 A 1 HETATM 24 C C6 MES . D . H 2 9.373 54.769 16.695 0.25 36.62 ? C6 MES 101 A 1 HETATM 25 C C7 MES . A . H 2 9.712 53.402 16.544 0.25 39.11 ? C7 MES 101 A 1 HETATM 26 C C7 MES . B . H 2 7.983 52.299 15.054 0.25 33.47 ? C7 MES 101 A 1 HETATM 27 C C7 MES . C . H 2 8.085 52.729 18.226 0.25 36 ? C7 MES 101 A 1 HETATM 28 C C7 MES . D . H 2 6.842 52.011 16.931 0.25 41.28 ? C7 MES 101 A 1 HETATM 29 C C8 MES . A . H 2 10.499 52.731 17.655 0.25 33.23 ? C8 MES 101 A 1 HETATM 30 C C8 MES . B . H 2 9.418 52.156 14.588 0.25 31.45 ? C8 MES 101 A 1 HETATM 31 C C8 MES . C . H 2 7.868 51.268 18.585 0.25 32.45 ? C8 MES 101 A 1 HETATM 32 C C8 MES . D . H 2 7.275 51.256 15.682 0.25 42.9 ? C8 MES 101 A 1 HETATM 33 S S MES . A . H 2 10.997 51.065 17.261 0.25 30.59 ? S MES 101 A 1 HETATM 34 S S MES . B . H 2 10.23 50.7 15.227 0.25 30.61 ? S MES 101 A 1 HETATM 35 S S MES . C . H 2 9.079 50.123 17.932 0.25 38.64 ? S MES 101 A 1 HETATM 36 S S MES . D . H 2 8.454 49.956 16.038 0.25 38.91 ? S MES 101 A 1 HETATM 37 O O1S MES . A . H 2 11.934 51.163 16.177 0.25 39.5 ? O1S MES 101 A 1 HETATM 38 O O1S MES . B . H 2 10.183 49.707 14.182 0.25 25.92 ? O1S MES 101 A 1 HETATM 39 O O1S MES . C . H 2 9.712 50.764 16.804 0.25 32.09 ? O1S MES 101 A 1 HETATM 40 O O1S MES . D . H 2 7.848 49.161 17.083 0.25 44.47 ? O1S MES 101 A 1 HETATM 41 O O2S MES . A . H 2 9.823 50.334 16.882 0.25 30.55 ? O2S MES 101 A 1 HETATM 42 O O2S MES . B . H 2 9.524 50.3 16.411 0.25 31.41 ? O2S MES 101 A 1 HETATM 43 O O2S MES . C . H 2 8.332 48.954 17.551 0.25 32.33 ? O2S MES 101 A 1 HETATM 44 O O2S MES . D . H 2 9.676 50.625 16.481 0.25 41.44 ? O2S MES 101 A 1 HETATM 45 O O3S MES . A . H 2 11.622 50.557 18.457 0.25 31.14 ? O3S MES 101 A 1 HETATM 46 O O3S MES . B . H 2 11.576 51.099 15.522 0.25 34.89 ? O3S MES 101 A 1 HETATM 47 O O3S MES . C . H 2 10.005 49.834 18.996 0.25 35.92 ? O3S MES 101 A 1 HETATM 48 O O3S MES . D . H 2 8.651 49.204 14.81 0.25 38.26 ? O3S MES 101 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #