data_7NFP # _model_server_result.job_id ayKZC1LekbMJoz7MUNwkfA _model_server_result.datetime_utc '2025-02-14 12:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":102}' # _entry.id 7NFP # _exptl.entry_id 7NFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NFP _cell.length_a 62.18 _cell.length_b 130.72 _cell.length_c 61.18 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ALA 19 A ALA 19 1_555 A N 4BF 20 A 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C 4BF 20 A 4BF 20 1_555 A N ALA 21 A ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C ALA 19 B ALA 19 1_555 B N 4BF 20 B 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C 4BF 20 B 4BF 20 1_555 B N ALA 21 B ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C ACE 1 C ACE 1 1_555 C N GLY 2 C GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 C C ALA 19 C ALA 19 1_555 C N 4BF 20 C 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 C C 4BF 20 C 4BF 20 1_555 C N ALA 21 C ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 D C ACE 1 D ACE 1 1_555 D N GLY 2 D GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 D C ALA 19 D ALA 19 1_555 D N 4BF 20 D 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 D C 4BF 20 D 4BF 20 1_555 D N ALA 21 D ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 E C ACE 1 E ACE 1 1_555 E N GLY 2 E GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 E C ALA 19 E ALA 19 1_555 E N 4BF 20 E 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 E C 4BF 20 E 4BF 20 1_555 E N ALA 21 E ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 F C ACE 1 F ACE 1 1_555 F N GLY 2 F GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 F C ALA 19 F ALA 19 1_555 F N 4BF 20 F 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 F C 4BF 20 F 4BF 20 1_555 F N ALA 21 F ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 G C ACE 1 G ACE 1 1_555 G N GLY 2 G GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 G C ALA 19 G ALA 19 1_555 G N 4BF 20 G 4BF 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale21 G C 4BF 20 G 4BF 20 1_555 G N ALA 21 G ALA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 95 n n C1 C2 GOL sing 96 n n C1 H11 GOL sing 97 n n C1 H12 GOL sing 98 n n O1 HO1 GOL sing 99 n n C2 O2 GOL sing 100 n n C2 C3 GOL sing 101 n n C2 H2 GOL sing 102 n n O2 HO2 GOL sing 103 n n C3 O3 GOL sing 104 n n C3 H31 GOL sing 105 n n C3 H32 GOL sing 106 n n O3 HO3 GOL sing 107 n n # _atom_sites.entry_id 7NFP _atom_sites.fract_transf_matrix[1][1] 0.016082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 GOL A 1 101 1 GOL GOL . I 2 GOL A 1 102 2 GOL GOL . J 3 HOH A 1 201 204 HOH HOH . J 3 HOH A 2 202 114 HOH HOH . J 3 HOH A 3 203 68 HOH HOH . J 3 HOH A 4 204 180 HOH HOH . J 3 HOH A 5 205 173 HOH HOH . J 3 HOH A 6 206 31 HOH HOH . J 3 HOH A 7 207 239 HOH HOH . J 3 HOH A 8 208 44 HOH HOH . J 3 HOH A 9 209 67 HOH HOH . J 3 HOH A 10 210 43 HOH HOH . J 3 HOH A 11 211 57 HOH HOH . J 3 HOH A 12 212 30 HOH HOH . J 3 HOH A 13 213 46 HOH HOH . J 3 HOH A 14 214 55 HOH HOH . J 3 HOH A 15 215 38 HOH HOH . J 3 HOH A 16 216 16 HOH HOH . J 3 HOH A 17 217 3 HOH HOH . J 3 HOH A 18 218 120 HOH HOH . J 3 HOH A 19 219 9 HOH HOH . J 3 HOH A 20 220 28 HOH HOH . J 3 HOH A 21 221 163 HOH HOH . J 3 HOH A 22 222 2 HOH HOH . J 3 HOH A 23 223 36 HOH HOH . J 3 HOH A 24 224 53 HOH HOH . J 3 HOH A 25 225 22 HOH HOH . J 3 HOH A 26 226 206 HOH HOH . J 3 HOH A 27 227 77 HOH HOH . J 3 HOH A 28 228 236 HOH HOH . J 3 HOH A 29 229 13 HOH HOH . J 3 HOH A 30 230 141 HOH HOH . J 3 HOH A 31 231 79 HOH HOH . J 3 HOH A 32 232 58 HOH HOH . J 3 HOH A 33 233 155 HOH HOH . J 3 HOH A 34 234 153 HOH HOH . J 3 HOH A 35 235 243 HOH HOH . J 3 HOH A 36 236 32 HOH HOH . J 3 HOH A 37 237 201 HOH HOH . J 3 HOH A 38 238 202 HOH HOH . J 3 HOH A 39 239 154 HOH HOH . J 3 HOH A 40 240 203 HOH HOH . J 3 HOH A 41 241 200 HOH HOH . J 3 HOH A 42 242 237 HOH HOH . J 3 HOH A 43 243 207 HOH HOH . J 3 HOH A 44 244 228 HOH HOH . K 3 HOH B 1 101 221 HOH HOH . K 3 HOH B 2 102 212 HOH HOH . K 3 HOH B 3 103 101 HOH HOH . K 3 HOH B 4 104 91 HOH HOH . K 3 HOH B 5 105 210 HOH HOH . K 3 HOH B 6 106 108 HOH HOH . K 3 HOH B 7 107 93 HOH HOH . K 3 HOH B 8 108 81 HOH HOH . K 3 HOH B 9 109 23 HOH HOH . K 3 HOH B 10 110 139 HOH HOH . K 3 HOH B 11 111 244 HOH HOH . K 3 HOH B 12 112 167 HOH HOH . K 3 HOH B 13 113 42 HOH HOH . K 3 HOH B 14 114 27 HOH HOH . K 3 HOH B 15 115 211 HOH HOH . K 3 HOH B 16 116 208 HOH HOH . K 3 HOH B 17 117 121 HOH HOH . K 3 HOH B 18 118 168 HOH HOH . K 3 HOH B 19 119 219 HOH HOH . K 3 HOH B 20 120 74 HOH HOH . K 3 HOH B 21 121 75 HOH HOH . K 3 HOH B 22 122 224 HOH HOH . K 3 HOH B 23 123 181 HOH HOH . K 3 HOH B 24 124 235 HOH HOH . K 3 HOH B 25 125 21 HOH HOH . K 3 HOH B 26 126 247 HOH HOH . L 3 HOH C 1 101 238 HOH HOH . L 3 HOH C 2 102 116 HOH HOH . L 3 HOH C 3 103 85 HOH HOH . L 3 HOH C 4 104 232 HOH HOH . L 3 HOH C 5 105 100 HOH HOH . L 3 HOH C 6 106 126 HOH HOH . L 3 HOH C 7 107 17 HOH HOH . L 3 HOH C 8 108 240 HOH HOH . L 3 HOH C 9 109 7 HOH HOH . L 3 HOH C 10 110 106 HOH HOH . L 3 HOH C 11 111 48 HOH HOH . L 3 HOH C 12 112 33 HOH HOH . L 3 HOH C 13 113 196 HOH HOH . L 3 HOH C 14 114 25 HOH HOH . L 3 HOH C 15 115 6 HOH HOH . L 3 HOH C 16 116 172 HOH HOH . L 3 HOH C 17 117 197 HOH HOH . L 3 HOH C 18 118 105 HOH HOH . L 3 HOH C 19 119 10 HOH HOH . L 3 HOH C 20 120 230 HOH HOH . L 3 HOH C 21 121 229 HOH HOH . L 3 HOH C 22 122 152 HOH HOH . L 3 HOH C 23 123 192 HOH HOH . L 3 HOH C 24 124 156 HOH HOH . L 3 HOH C 25 125 12 HOH HOH . L 3 HOH C 26 126 191 HOH HOH . L 3 HOH C 27 127 198 HOH HOH . L 3 HOH C 28 128 242 HOH HOH . M 3 HOH D 1 101 231 HOH HOH . M 3 HOH D 2 102 188 HOH HOH . M 3 HOH D 3 103 82 HOH HOH . M 3 HOH D 4 104 87 HOH HOH . M 3 HOH D 5 105 103 HOH HOH . M 3 HOH D 6 106 138 HOH HOH . M 3 HOH D 7 107 51 HOH HOH . M 3 HOH D 8 108 62 HOH HOH . M 3 HOH D 9 109 60 HOH HOH . M 3 HOH D 10 110 151 HOH HOH . M 3 HOH D 11 111 194 HOH HOH . M 3 HOH D 12 112 133 HOH HOH . M 3 HOH D 13 113 118 HOH HOH . M 3 HOH D 14 114 24 HOH HOH . M 3 HOH D 15 115 18 HOH HOH . M 3 HOH D 16 116 149 HOH HOH . M 3 HOH D 17 117 146 HOH HOH . M 3 HOH D 18 118 47 HOH HOH . M 3 HOH D 19 119 4 HOH HOH . M 3 HOH D 20 120 129 HOH HOH . M 3 HOH D 21 121 65 HOH HOH . M 3 HOH D 22 122 157 HOH HOH . M 3 HOH D 23 123 250 HOH HOH . M 3 HOH D 24 124 147 HOH HOH . M 3 HOH D 25 125 186 HOH HOH . M 3 HOH D 26 126 249 HOH HOH . M 3 HOH D 27 127 128 HOH HOH . M 3 HOH D 28 128 220 HOH HOH . M 3 HOH D 29 129 226 HOH HOH . M 3 HOH D 30 130 190 HOH HOH . M 3 HOH D 31 131 189 HOH HOH . M 3 HOH D 32 132 245 HOH HOH . M 3 HOH D 33 133 225 HOH HOH . M 3 HOH D 34 134 193 HOH HOH . M 3 HOH D 35 135 227 HOH HOH . N 3 HOH E 1 101 209 HOH HOH . N 3 HOH E 2 102 117 HOH HOH . N 3 HOH E 3 103 158 HOH HOH . N 3 HOH E 4 104 112 HOH HOH . N 3 HOH E 5 105 143 HOH HOH . N 3 HOH E 6 106 90 HOH HOH . N 3 HOH E 7 107 140 HOH HOH . N 3 HOH E 8 108 169 HOH HOH . N 3 HOH E 9 109 107 HOH HOH . N 3 HOH E 10 110 183 HOH HOH . N 3 HOH E 11 111 148 HOH HOH . N 3 HOH E 12 112 52 HOH HOH . N 3 HOH E 13 113 142 HOH HOH . N 3 HOH E 14 114 37 HOH HOH . N 3 HOH E 15 115 1 HOH HOH . N 3 HOH E 16 116 134 HOH HOH . N 3 HOH E 17 117 39 HOH HOH . N 3 HOH E 18 118 150 HOH HOH . N 3 HOH E 19 119 11 HOH HOH . N 3 HOH E 20 120 76 HOH HOH . N 3 HOH E 21 121 184 HOH HOH . N 3 HOH E 22 122 182 HOH HOH . N 3 HOH E 23 123 41 HOH HOH . N 3 HOH E 24 124 217 HOH HOH . N 3 HOH E 25 125 248 HOH HOH . N 3 HOH E 26 126 102 HOH HOH . N 3 HOH E 27 127 187 HOH HOH . N 3 HOH E 28 128 49 HOH HOH . O 3 HOH F 1 101 170 HOH HOH . O 3 HOH F 2 102 113 HOH HOH . O 3 HOH F 3 103 109 HOH HOH . O 3 HOH F 4 104 111 HOH HOH . O 3 HOH F 5 105 98 HOH HOH . O 3 HOH F 6 106 144 HOH HOH . O 3 HOH F 7 107 159 HOH HOH . O 3 HOH F 8 108 63 HOH HOH . O 3 HOH F 9 109 115 HOH HOH . O 3 HOH F 10 110 29 HOH HOH . O 3 HOH F 11 111 59 HOH HOH . O 3 HOH F 12 112 234 HOH HOH . O 3 HOH F 13 113 8 HOH HOH . O 3 HOH F 14 114 131 HOH HOH . O 3 HOH F 15 115 218 HOH HOH . O 3 HOH F 16 116 15 HOH HOH . O 3 HOH F 17 117 176 HOH HOH . O 3 HOH F 18 118 177 HOH HOH . O 3 HOH F 19 119 233 HOH HOH . O 3 HOH F 20 120 122 HOH HOH . O 3 HOH F 21 121 171 HOH HOH . O 3 HOH F 22 122 174 HOH HOH . O 3 HOH F 23 123 84 HOH HOH . O 3 HOH F 24 124 110 HOH HOH . O 3 HOH F 25 125 145 HOH HOH . O 3 HOH F 26 126 241 HOH HOH . O 3 HOH F 27 127 119 HOH HOH . O 3 HOH F 28 128 205 HOH HOH . O 3 HOH F 29 129 215 HOH HOH . O 3 HOH F 30 130 132 HOH HOH . O 3 HOH F 31 131 165 HOH HOH . O 3 HOH F 32 132 175 HOH HOH . O 3 HOH F 33 133 246 HOH HOH . O 3 HOH F 34 134 216 HOH HOH . O 3 HOH F 35 135 164 HOH HOH . P 3 HOH G 1 101 137 HOH HOH . P 3 HOH G 2 102 161 HOH HOH . P 3 HOH G 3 103 213 HOH HOH . P 3 HOH G 4 104 130 HOH HOH . P 3 HOH G 5 105 54 HOH HOH . P 3 HOH G 6 106 96 HOH HOH . P 3 HOH G 7 107 178 HOH HOH . P 3 HOH G 8 108 26 HOH HOH . P 3 HOH G 9 109 19 HOH HOH . P 3 HOH G 10 110 35 HOH HOH . P 3 HOH G 11 111 40 HOH HOH . P 3 HOH G 12 112 61 HOH HOH . P 3 HOH G 13 113 166 HOH HOH . P 3 HOH G 14 114 14 HOH HOH . P 3 HOH G 15 115 45 HOH HOH . P 3 HOH G 16 116 162 HOH HOH . P 3 HOH G 17 117 214 HOH HOH . P 3 HOH G 18 118 5 HOH HOH . P 3 HOH G 19 119 89 HOH HOH . P 3 HOH G 20 120 50 HOH HOH . P 3 HOH G 21 121 199 HOH HOH . P 3 HOH G 22 122 179 HOH HOH . P 3 HOH G 23 123 185 HOH HOH . P 3 HOH G 24 124 78 HOH HOH . P 3 HOH G 25 125 64 HOH HOH . P 3 HOH G 26 126 80 HOH HOH . P 3 HOH G 27 127 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 49.294 44.031 30.874 1 37.12 ? C1 GOL 102 A 1 HETATM 2 O O1 GOL . . . I 2 48.407 43.885 29.814 1 61.97 ? O1 GOL 102 A 1 HETATM 3 C C2 GOL . . . I 2 48.648 45.011 31.866 1 40.06 ? C2 GOL 102 A 1 HETATM 4 O O2 GOL . . . I 2 48.853 46.324 31.491 1 67.8 ? O2 GOL 102 A 1 HETATM 5 C C3 GOL . . . I 2 47.163 44.645 31.845 1 45.61 ? C3 GOL 102 A 1 HETATM 6 O O3 GOL . . . I 2 47.097 43.254 31.841 1 90.01 ? O3 GOL 102 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #