data_7NG4
#
_model_server_result.job_id            wx3WtyvlAwADsIJwb3esuw 
_model_server_result.datetime_utc      '2024-11-22 22:40:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ng4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1001}' 
#
_entry.id    7NG4 
#
_exptl.entry_id    7NG4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NG4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 424 A THR 530 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 H O1G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc3 H O2G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc4 H O1B ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc5 H O1A ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc6 B OG1 THR 424 B THR 530 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc7 J O1G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc8 J O2G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 J O1B ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc10 C OG1 THR 424 C THR 530 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc11 L O1G ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc12 L O2G ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc13 L O1B ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc14 L O1A ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc15 F OG1 THR 424 F THR 530 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc16 P O1G ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc17 P O2G ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc18 P O1B ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc19 P O3B ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc20 P O1A ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7NG4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ATP A 1 1001 1001 ATP ATP . 
I 4 MG A 1 1002 1002 MG MG . 
J 3 ATP B 1 1001 1001 ATP ATP . 
K 4 MG B 1 1002 1002 MG MG . 
L 3 ATP C 1 1001 1001 ATP ATP . 
M 4 MG C 1 1002 1002 MG MG . 
N 5 ADP D 1 1001 1001 ADP ADP . 
O 5 ADP E 1 1001 1001 ADP ADP . 
P 3 ATP F 1 1001 1001 ATP ATP . 
Q 4 MG F 1 1002 1002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . L 3 196.492 162.214 229.71 1 175.97 ? PG ATP 1001 C 1 
HETATM 2 O O1G ATP . . . L 3 195.085 161.751 229.454 1 175.97 ? O1G ATP 1001 C 1 
HETATM 3 O O2G ATP . . . L 3 197.42 162.094 228.551 1 175.97 ? O2G ATP 1001 C 1 
HETATM 4 O O3G ATP . . . L 3 196.55 163.519 230.441 1 175.97 ? O3G ATP 1001 C 1 
HETATM 5 P PB ATP . . . L 3 196.893 159.681 230.603 1 175.97 ? PB ATP 1001 C 1 
HETATM 6 O O1B ATP . . . L 3 196.28 159.46 229.249 1 175.97 ? O1B ATP 1001 C 1 
HETATM 7 O O2B ATP . . . L 3 196.169 159.445 231.892 1 175.97 ? O2B ATP 1001 C 1 
HETATM 8 O O3B ATP . . . L 3 197.267 161.214 230.681 1 175.97 ? O3B ATP 1001 C 1 
HETATM 9 P PA ATP . . . L 3 198.62 158.533 229.043 1 175.97 ? PA ATP 1001 C 1 
HETATM 10 O O1A ATP . . . L 3 198.726 159.803 228.266 1 175.97 ? O1A ATP 1001 C 1 
HETATM 11 O O2A ATP . . . L 3 197.767 157.397 228.556 1 175.97 ? O2A ATP 1001 C 1 
HETATM 12 O O3A ATP . . . L 3 198.27 158.914 230.528 1 175.97 ? O3A ATP 1001 C 1 
HETATM 13 O O5' ATP . . . L 3 200.082 157.958 229.18 1 175.97 ? O5' ATP 1001 C 1 
HETATM 14 C C5' ATP . . . L 3 201.102 158.683 228.545 1 175.97 ? C5' ATP 1001 C 1 
HETATM 15 C C4' ATP . . . L 3 202.371 157.926 228.866 1 175.97 ? C4' ATP 1001 C 1 
HETATM 16 O O4' ATP . . . L 3 202.177 157.161 230.061 1 175.97 ? O4' ATP 1001 C 1 
HETATM 17 C C3' ATP . . . L 3 202.718 156.934 227.78 1 175.97 ? C3' ATP 1001 C 1 
HETATM 18 O O3' ATP . . . L 3 203.984 157.283 227.225 1 175.97 ? O3' ATP 1001 C 1 
HETATM 19 C C2' ATP . . . L 3 202.774 155.607 228.454 1 175.97 ? C2' ATP 1001 C 1 
HETATM 20 O O2' ATP . . . L 3 203.896 154.806 228.095 1 175.97 ? O2' ATP 1001 C 1 
HETATM 21 C C1' ATP . . . L 3 202.82 155.898 229.93 1 175.97 ? C1' ATP 1001 C 1 
HETATM 22 N N9 ATP . . . L 3 202.115 154.823 230.641 1 175.97 ? N9 ATP 1001 C 1 
HETATM 23 C C8 ATP . . . L 3 201.27 155.01 231.659 1 175.97 ? C8 ATP 1001 C 1 
HETATM 24 N N7 ATP . . . L 3 200.802 153.819 232.094 1 175.97 ? N7 ATP 1001 C 1 
HETATM 25 C C5 ATP . . . L 3 201.348 152.859 231.348 1 175.97 ? C5 ATP 1001 C 1 
HETATM 26 C C6 ATP . . . L 3 201.267 151.394 231.283 1 175.97 ? C6 ATP 1001 C 1 
HETATM 27 N N6 ATP . . . L 3 200.476 150.741 232.144 1 175.97 ? N6 ATP 1001 C 1 
HETATM 28 N N1 ATP . . . L 3 201.997 150.745 230.361 1 175.97 ? N1 ATP 1001 C 1 
HETATM 29 C C2 ATP . . . L 3 202.782 151.405 229.504 1 175.97 ? C2 ATP 1001 C 1 
HETATM 30 N N3 ATP . . . L 3 202.9 152.739 229.519 1 175.97 ? N3 ATP 1001 C 1 
HETATM 31 C C4 ATP . . . L 3 202.231 153.515 230.403 1 175.97 ? C4 ATP 1001 C 1 
HETATM 32 H "H5'1" ATP . . . L 3 201.166 159.678 228.991 1 175.97 ? "H5'1" ATP 1001 C 1 
HETATM 33 H "H5'2" ATP . . . L 3 200.916 158.817 227.476 1 175.97 ? "H5'2" ATP 1001 C 1 
HETATM 34 H H4' ATP . . . L 3 203.201 158.635 228.994 1 175.97 ? H4' ATP 1001 C 1 
HETATM 35 H H3' ATP . . . L 3 201.94 156.845 227.018 1 175.97 ? H3' ATP 1001 C 1 
HETATM 36 H HO3' ATP . . . L 3 204.194 156.717 226.472 1 175.97 ? HO3' ATP 1001 C 1 
HETATM 37 H H2' ATP . . . L 3 201.835 155.112 228.16 1 175.97 ? H2' ATP 1001 C 1 
HETATM 38 H HO2' ATP . . . L 3 203.816 154.526 227.173 1 175.97 ? HO2' ATP 1001 C 1 
HETATM 39 H H1' ATP . . . L 3 203.866 155.959 230.26 1 175.97 ? H1' ATP 1001 C 1 
HETATM 40 H H8 ATP . . . L 3 201.002 155.973 232.078 1 175.97 ? H8 ATP 1001 C 1 
HETATM 41 H HN61 ATP . . . L 3 199.958 151.274 232.81 1 175.97 ? HN61 ATP 1001 C 1 
HETATM 42 H HN62 ATP . . . L 3 200.399 149.74 232.131 1 175.97 ? HN62 ATP 1001 C 1 
HETATM 43 H H2 ATP . . . L 3 203.356 150.839 228.78 1 175.97 ? H2 ATP 1001 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#