data_7NG5 # _model_server_result.job_id DpwqYXGPVrbYRyT5ujq20Q _model_server_result.datetime_utc '2024-11-23 12:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ng5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1001}' # _entry.id 7NG5 # _exptl.entry_id 7NG5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NG5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 O N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 424 A THR 530 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 H O2G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 H O1B ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 B OG1 THR 424 B THR 530 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 J O1G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc6 J O2G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 J O1B ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 C OG1 THR 424 C THR 530 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 L O1G ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc10 L O2G ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 L O1B ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 O O2G ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc13 O O1B ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc14 O O3B ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc15 O O1A ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc16 O O3A ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc17 Q O2G ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc18 Q O1B ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc19 Q O3B ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc20 Q O1A ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc21 Q O3A ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7NG5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 1001 1001 ATP ATP . I 4 MG A 1 1002 1002 MG MG . J 3 ATP B 1 1001 1001 ATP ATP . K 4 MG B 1 1002 1002 MG MG . L 3 ATP C 1 1001 1001 ATP ATP . M 4 MG C 1 1002 1002 MG MG . N 5 ADP D 1 1001 1001 ADP ADP . O 3 ATP E 1 1001 1001 ATP ATP . P 4 MG E 1 1002 1002 MG MG . Q 3 ATP F 1 1001 1001 ATP ATP . R 4 MG F 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 3 156.88 137.317 198.412 1 116.55 ? PG ATP 1001 E 1 HETATM 2 O O1G ATP . . . O 3 157.845 137.858 199.427 1 116.55 ? O1G ATP 1001 E 1 HETATM 3 O O2G ATP . . . O 3 157.305 137.398 196.977 1 116.55 ? O2G ATP 1001 E 1 HETATM 4 O O3G ATP . . . O 3 155.469 137.775 198.634 1 116.55 ? O3G ATP 1001 E 1 HETATM 5 P PB ATP . . . O 3 155.406 135.047 198.58 1 116.55 ? PB ATP 1001 E 1 HETATM 6 O O1B ATP . . . O 3 154.848 135.56 197.289 1 116.55 ? O1B ATP 1001 E 1 HETATM 7 O O2B ATP . . . O 3 154.664 135.123 199.87 1 116.55 ? O2B ATP 1001 E 1 HETATM 8 O O3B ATP . . . O 3 156.822 135.747 198.726 1 116.55 ? O3B ATP 1001 E 1 HETATM 9 P PA ATP . . . O 3 155.299 132.993 196.989 1 116.55 ? PA ATP 1001 E 1 HETATM 10 O O1A ATP . . . O 3 156.246 133.636 196.028 1 116.55 ? O1A ATP 1001 E 1 HETATM 11 O O2A ATP . . . O 3 153.811 133.181 196.804 1 116.55 ? O2A ATP 1001 E 1 HETATM 12 O O3A ATP . . . O 3 155.792 133.533 198.376 1 116.55 ? O3A ATP 1001 E 1 HETATM 13 O O5' ATP . . . O 3 155.661 131.444 197.04 1 116.55 ? O5' ATP 1001 E 1 HETATM 14 C C5' ATP . . . O 3 156.853 131.001 196.416 1 116.55 ? C5' ATP 1001 E 1 HETATM 15 C C4' ATP . . . O 3 156.88 129.494 196.566 1 116.55 ? C4' ATP 1001 E 1 HETATM 16 O O4' ATP . . . O 3 156.139 129.135 197.719 1 116.55 ? O4' ATP 1001 E 1 HETATM 17 C C3' ATP . . . O 3 156.222 128.809 195.39 1 116.55 ? C3' ATP 1001 E 1 HETATM 18 O O3' ATP . . . O 3 157.204 127.993 194.754 1 116.55 ? O3' ATP 1001 E 1 HETATM 19 C C2' ATP . . . O 3 155.127 127.975 195.99 1 116.55 ? C2' ATP 1001 E 1 HETATM 20 O O2' ATP . . . O 3 155.113 126.633 195.516 1 116.55 ? O2' ATP 1001 E 1 HETATM 21 C C1' ATP . . . O 3 155.349 127.985 197.473 1 116.55 ? C1' ATP 1001 E 1 HETATM 22 N N9 ATP . . . O 3 154.041 128.156 198.07 1 116.55 ? N9 ATP 1001 E 1 HETATM 23 C C8 ATP . . . O 3 153.684 129.19 198.817 1 116.55 ? C8 ATP 1001 E 1 HETATM 24 N N7 ATP . . . O 3 152.425 129.02 199.251 1 116.55 ? N7 ATP 1001 E 1 HETATM 25 C C5 ATP . . . O 3 151.973 127.878 198.794 1 116.55 ? C5 ATP 1001 E 1 HETATM 26 C C6 ATP . . . O 3 150.716 127.162 198.877 1 116.55 ? C6 ATP 1001 E 1 HETATM 27 N N6 ATP . . . O 3 149.66 127.604 199.577 1 116.55 ? N6 ATP 1001 E 1 HETATM 28 N N1 ATP . . . O 3 150.672 125.99 198.265 1 116.55 ? N1 ATP 1001 E 1 HETATM 29 C C2 ATP . . . O 3 151.71 125.501 197.579 1 116.55 ? C2 ATP 1001 E 1 HETATM 30 N N3 ATP . . . O 3 152.878 126.132 197.452 1 116.55 ? N3 ATP 1001 E 1 HETATM 31 C C4 ATP . . . O 3 153.067 127.289 198.059 1 116.55 ? C4 ATP 1001 E 1 HETATM 32 H "H5'1" ATP . . . O 3 157.707 131.425 196.949 1 116.55 ? "H5'1" ATP 1001 E 1 HETATM 33 H "H5'2" ATP . . . O 3 156.923 131.326 195.376 1 116.55 ? "H5'2" ATP 1001 E 1 HETATM 34 H H4' ATP . . . O 3 157.92 129.154 196.653 1 116.55 ? H4' ATP 1001 E 1 HETATM 35 H H3' ATP . . . O 3 155.765 129.504 194.674 1 116.55 ? H3' ATP 1001 E 1 HETATM 36 H HO3' ATP . . . O 3 156.867 127.662 193.911 1 116.55 ? HO3' ATP 1001 E 1 HETATM 37 H H2' ATP . . . O 3 154.178 128.469 195.75 1 116.55 ? H2' ATP 1001 E 1 HETATM 38 H HO2' ATP . . . O 3 154.894 126.614 194.574 1 116.55 ? HO2' ATP 1001 E 1 HETATM 39 H H1' ATP . . . O 3 155.842 127.06 197.802 1 116.55 ? H1' ATP 1001 E 1 HETATM 40 H H8 ATP . . . O 3 154.283 130.059 199.059 1 116.55 ? H8 ATP 1001 E 1 HETATM 41 H HN61 ATP . . . O 3 149.704 128.493 200.053 1 116.55 ? HN61 ATP 1001 E 1 HETATM 42 H HN62 ATP . . . O 3 148.815 127.053 199.615 1 116.55 ? HN62 ATP 1001 E 1 HETATM 43 H H2 ATP . . . O 3 151.59 124.539 197.092 1 116.55 ? H2 ATP 1001 E 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #