data_7NGC
#
_model_server_result.job_id            pdM9GLNvqYdUwEB2kjmxUA 
_model_server_result.datetime_utc      '2024-11-05 04:08:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ngc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1001}' 
#
_entry.id    7NGC 
#
_exptl.entry_id    7NGC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NGC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 424 A THR 530 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc2 H O2G AGS . A AGS 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 H O1B AGS . A AGS 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc4 B OG1 THR 424 B THR 530 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc5 J O2G AGS . B AGS 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc6 J O1B AGS . B AGS 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc7 J O1A AGS . B AGS 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? 
metalc ? metalc8 C OG1 THR 424 C THR 530 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc9 L O2G AGS . C AGS 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc10 L O1B AGS . C AGS 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc11 L O1A AGS . C AGS 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc12 E OG1 THR 424 E THR 530 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc13 O O2G AGS . E AGS 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc14 O O1B AGS . E AGS 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc15 F OG1 THR 424 F THR 530 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc16 Q O2G AGS . F AGS 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc17 Q O1B AGS . F AGS 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7NGC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 1001 1001 AGS AGS . 
I 4 MG A 1 1002 1002 MG MG . 
J 3 AGS B 1 1001 1001 AGS AGS . 
K 4 MG B 1 1002 1002 MG MG . 
L 3 AGS C 1 1001 1001 AGS AGS . 
M 4 MG C 1 1002 1002 MG MG . 
N 5 ADP D 1 1001 1001 ADP ADP . 
O 3 AGS E 1 1001 1001 AGS AGS . 
P 4 MG E 1 1002 1002 MG MG . 
Q 3 AGS F 1 1001 1001 AGS AGS . 
R 4 MG F 1 1002 1002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . N 5 206.605 244.647 246.985 1 120.12 ? PB ADP 1001 D 1 
HETATM 2 O O1B ADP . . . N 5 207.829 244.679 246.139 1 120.12 ? O1B ADP 1001 D 1 
HETATM 3 O O2B ADP . . . N 5 206.745 245.474 248.222 1 120.12 ? O2B ADP 1001 D 1 
HETATM 4 O O3B ADP . . . N 5 205.985 243.29 247.17 1 120.12 ? O3B ADP 1001 D 1 
HETATM 5 P PA ADP . . . N 5 205.946 246.894 245.495 1 120.12 ? PA ADP 1001 D 1 
HETATM 6 O O1A ADP . . . N 5 205.52 246.885 244.058 1 120.12 ? O1A ADP 1001 D 1 
HETATM 7 O O2A ADP . . . N 5 207.359 247.266 245.754 1 120.12 ? O2A ADP 1001 D 1 
HETATM 8 O O3A ADP . . . N 5 205.561 245.466 246.106 1 120.12 ? O3A ADP 1001 D 1 
HETATM 9 O O5' ADP . . . N 5 204.98 247.922 246.241 1 120.12 ? O5' ADP 1001 D 1 
HETATM 10 C C5' ADP . . . N 5 203.884 247.579 247.079 1 120.12 ? C5' ADP 1001 D 1 
HETATM 11 C C4' ADP . . . N 5 203.113 248.875 247.296 1 120.12 ? C4' ADP 1001 D 1 
HETATM 12 O O4' ADP . . . N 5 203.903 249.799 248.037 1 120.12 ? O4' ADP 1001 D 1 
HETATM 13 C C3' ADP . . . N 5 202.772 249.501 245.949 1 120.12 ? C3' ADP 1001 D 1 
HETATM 14 O O3' ADP . . . N 5 201.359 249.7 245.852 1 120.12 ? O3' ADP 1001 D 1 
HETATM 15 C C2' ADP . . . N 5 203.491 250.825 246.03 1 120.12 ? C2' ADP 1001 D 1 
HETATM 16 O O2' ADP . . . N 5 202.742 251.883 245.435 1 120.12 ? O2' ADP 1001 D 1 
HETATM 17 C C1' ADP . . . N 5 203.699 251.108 247.505 1 120.12 ? C1' ADP 1001 D 1 
HETATM 18 N N9 ADP . . . N 5 204.902 251.916 247.74 1 120.12 ? N9 ADP 1001 D 1 
HETATM 19 C C8 ADP . . . N 5 205.611 251.751 248.849 1 120.12 ? C8 ADP 1001 D 1 
HETATM 20 N N7 ADP . . . N 5 206.621 252.643 248.936 1 120.12 ? N7 ADP 1001 D 1 
HETATM 21 C C5 ADP . . . N 5 206.496 253.485 247.905 1 120.12 ? C5 ADP 1001 D 1 
HETATM 22 C C6 ADP . . . N 5 207.234 254.665 247.41 1 120.12 ? C6 ADP 1001 D 1 
HETATM 23 N N6 ADP . . . N 5 208.305 255.099 248.111 1 120.12 ? N6 ADP 1001 D 1 
HETATM 24 N N1 ADP . . . N 5 206.77 255.268 246.295 1 120.12 ? N1 ADP 1001 D 1 
HETATM 25 C C2 ADP . . . N 5 205.674 254.797 245.658 1 120.12 ? C2 ADP 1001 D 1 
HETATM 26 N N3 ADP . . . N 5 204.985 253.714 246.053 1 120.12 ? N3 ADP 1001 D 1 
HETATM 27 C C4 ADP . . . N 5 205.296 253.055 247.184 1 120.12 ? C4 ADP 1001 D 1 
HETATM 28 H "H5'1" ADP . . . N 5 204.252 247.217 248.034 1 120.12 ? "H5'1" ADP 1001 D 1 
HETATM 29 H "H5'2" ADP . . . N 5 203.255 246.818 246.616 1 120.12 ? "H5'2" ADP 1001 D 1 
HETATM 30 H H4' ADP . . . N 5 202.182 248.654 247.837 1 120.12 ? H4' ADP 1001 D 1 
HETATM 31 H H3' ADP . . . N 5 203.101 248.927 245.073 1 120.12 ? H3' ADP 1001 D 1 
HETATM 32 H HO3' ADP . . . N 5 201.121 250.002 244.964 1 120.12 ? HO3' ADP 1001 D 1 
HETATM 33 H H2' ADP . . . N 5 204.471 250.731 245.541 1 120.12 ? H2' ADP 1001 D 1 
HETATM 34 H HO2' ADP . . . N 5 202.675 251.719 244.487 1 120.12 ? HO2' ADP 1001 D 1 
HETATM 35 H H1' ADP . . . N 5 202.805 251.581 247.934 1 120.12 ? H1' ADP 1001 D 1 
HETATM 36 H H8 ADP . . . N 5 205.464 250.948 249.549 1 120.12 ? H8 ADP 1001 D 1 
HETATM 37 H HN61 ADP . . . N 5 208.584 254.6 248.943 1 120.12 ? HN61 ADP 1001 D 1 
HETATM 38 H HN62 ADP . . . N 5 208.826 255.9 247.826 1 120.12 ? HN62 ADP 1001 D 1 
HETATM 39 H H2 ADP . . . N 5 205.353 255.303 244.756 1 120.12 ? H2 ADP 1001 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#