data_7NGF
#
_model_server_result.job_id            JI7-m0npy0Pw8CFb5T6o_g 
_model_server_result.datetime_utc      '2024-11-29 16:54:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ngf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1001}' 
#
_entry.id    7NGF 
#
_exptl.entry_id    7NGF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NGF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 408 A THR 530 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 H O1G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc3 H O2G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc4 H O1B ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 B OG1 THR 408 B THR 530 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc6 J O1G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 J O2G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc8 J O1B ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc9 D OG1 THR 408 D THR 530 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc10 M O2G ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc11 M O3G ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc12 M O1B ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc13 E OG1 THR 408 E THR 530 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc14 O O2G ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc15 O O1B ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc16 O O1A ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc17 F OG1 THR 408 F THR 530 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc18 Q O2G ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc19 Q O1B ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7NGF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ATP A 1 1001 1001 ATP ATP . 
I 4 MG A 1 1002 1002 MG MG . 
J 3 ATP B 1 1001 1001 ATP ATP . 
K 4 MG B 1 1002 1002 MG MG . 
L 5 ADP C 1 1001 1001 ADP ADP . 
M 3 ATP D 1 1001 1001 ATP ATP . 
N 4 MG D 1 1002 1002 MG MG . 
O 3 ATP E 1 1001 1001 ATP ATP . 
P 4 MG E 1 1002 1002 MG MG . 
Q 3 ATP F 1 1001 1001 ATP ATP . 
R 4 MG F 1 1002 1002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 3 145.453 196.362 208.348 1 269.01 ? PG ATP 1001 D 1 
HETATM 2 O O1G ATP . . . M 3 145.314 195.558 209.611 1 269.01 ? O1G ATP 1001 D 1 
HETATM 3 O O2G ATP . . . M 3 144.873 196.03 207.013 1 269.01 ? O2G ATP 1001 D 1 
HETATM 4 O O3G ATP . . . M 3 146.877 196.844 208.254 1 269.01 ? O3G ATP 1001 D 1 
HETATM 5 P PB ATP . . . M 3 145.217 198.979 208.338 1 269.01 ? PB ATP 1001 D 1 
HETATM 6 O O1B ATP . . . M 3 145.865 198.858 206.971 1 269.01 ? O1B ATP 1001 D 1 
HETATM 7 O O2B ATP . . . M 3 145.847 199.313 209.655 1 269.01 ? O2B ATP 1001 D 1 
HETATM 8 O O3B ATP . . . M 3 144.514 197.609 208.631 1 269.01 ? O3B ATP 1001 D 1 
HETATM 9 P PA ATP . . . M 3 143.609 200.331 206.751 1 269.01 ? PA ATP 1001 D 1 
HETATM 10 O O1A ATP . . . M 3 143.448 199.077 205.939 1 269.01 ? O1A ATP 1001 D 1 
HETATM 11 O O2A ATP . . . M 3 144.395 201.449 206.134 1 269.01 ? O2A ATP 1001 D 1 
HETATM 12 O O3A ATP . . . M 3 143.933 199.852 208.204 1 269.01 ? O3A ATP 1001 D 1 
HETATM 13 O O5' ATP . . . M 3 142.182 200.842 207.234 1 269.01 ? O5' ATP 1001 D 1 
HETATM 14 C C5' ATP . . . M 3 141.05 200 207.098 1 269.01 ? C5' ATP 1001 D 1 
HETATM 15 C C4' ATP . . . M 3 139.884 200.945 207.229 1 269.01 ? C4' ATP 1001 D 1 
HETATM 16 O O4' ATP . . . M 3 140.16 201.952 208.2 1 269.01 ? O4' ATP 1001 D 1 
HETATM 17 C C3' ATP . . . M 3 139.738 201.578 205.861 1 269.01 ? C3' ATP 1001 D 1 
HETATM 18 O O3' ATP . . . M 3 138.475 201.227 205.291 1 269.01 ? O3' ATP 1001 D 1 
HETATM 19 C C2' ATP . . . M 3 139.84 203.046 206.17 1 269.01 ? C2' ATP 1001 D 1 
HETATM 20 O O2' ATP . . . M 3 138.825 203.811 205.52 1 269.01 ? O2' ATP 1001 D 1 
HETATM 21 C C1' ATP . . . M 3 139.756 203.217 207.679 1 269.01 ? C1' ATP 1001 D 1 
HETATM 22 N N9 ATP . . . M 3 140.676 204.252 208.148 1 269.01 ? N9 ATP 1001 D 1 
HETATM 23 C C8 ATP . . . M 3 141.355 204.161 209.286 1 269.01 ? C8 ATP 1001 D 1 
HETATM 24 N N7 ATP . . . M 3 142.049 205.294 209.506 1 269.01 ? N7 ATP 1001 D 1 
HETATM 25 C C5 ATP . . . M 3 141.74 206.155 208.541 1 269.01 ? C5 ATP 1001 D 1 
HETATM 26 C C6 ATP . . . M 3 142.114 207.527 208.184 1 269.01 ? C6 ATP 1001 D 1 
HETATM 27 N N6 ATP . . . M 3 142.974 208.218 208.96 1 269.01 ? N6 ATP 1001 D 1 
HETATM 28 N N1 ATP . . . M 3 141.534 208.072 207.091 1 269.01 ? N1 ATP 1001 D 1 
HETATM 29 C C2 ATP . . . M 3 140.658 207.384 206.334 1 269.01 ? C2 ATP 1001 D 1 
HETATM 30 N N3 ATP . . . M 3 140.304 206.125 206.608 1 269.01 ? N3 ATP 1001 D 1 
HETATM 31 C C4 ATP . . . M 3 140.76 205.49 207.702 1 269.01 ? C4 ATP 1001 D 1 
HETATM 32 H "H5'1" ATP . . . M 3 141.03 199.308 207.942 1 269.01 ? "H5'1" ATP 1001 D 1 
HETATM 33 H "H5'2" ATP . . . M 3 141.015 199.391 206.19 1 269.01 ? "H5'2" ATP 1001 D 1 
HETATM 34 H H4' ATP . . . M 3 138.972 200.385 207.484 1 269.01 ? H4' ATP 1001 D 1 
HETATM 35 H H3' ATP . . . M 3 140.558 201.349 205.168 1 269.01 ? H3' ATP 1001 D 1 
HETATM 36 H HO3' ATP . . . M 3 138.442 201.499 204.365 1 269.01 ? HO3' ATP 1001 D 1 
HETATM 37 H H2' ATP . . . M 3 140.828 203.374 205.816 1 269.01 ? H2' ATP 1001 D 1 
HETATM 38 H HO2' ATP . . . M 3 138.945 203.772 204.562 1 269.01 ? HO2' ATP 1001 D 1 
HETATM 39 H H1' ATP . . . M 3 138.722 203.448 207.971 1 269.01 ? H1' ATP 1001 D 1 
HETATM 40 H H8 ATP . . . M 3 141.432 203.277 209.902 1 269.01 ? H8 ATP 1001 D 1 
HETATM 41 H HN61 ATP . . . M 3 143.375 207.779 209.775 1 269.01 ? HN61 ATP 1001 D 1 
HETATM 42 H HN62 ATP . . . M 3 143.232 209.16 208.726 1 269.01 ? HN62 ATP 1001 D 1 
HETATM 43 H H2 ATP . . . M 3 140.239 207.862 205.458 1 269.01 ? H2 ATP 1001 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           43 
#