data_7NGQ
#
_model_server_result.job_id            HG7iWLezv9eYCd22CJMBNA 
_model_server_result.datetime_utc      '2024-11-26 04:23:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ngq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1001}' 
#
_entry.id    7NGQ 
#
_exptl.entry_id    7NGQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NGQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C LYS 600 D LYS 722 1_555 E N ARG 389 E ARG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale2 D C ALA 602 D ALA 724 1_555 E C GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
covale ? covale3 D C ALA 602 D ALA 724 1_555 E N GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 D N TYR 603 D TYR 725 1_555 E N GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7NGQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 1001 1001 ADP ADP . 
H 2 ADP B 1 1001 1001 ADP ADP . 
I 2 ADP C 1 1001 1001 ADP ADP . 
J 2 ADP D 1 1001 1001 ADP ADP . 
K 2 ADP E 1 1001 1001 ADP ADP . 
L 2 ADP F 1 1001 1001 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 2 247.75 195.97 241.637 1 872.92 ? PB ADP 1001 D 1 
HETATM 2 O O1B ADP . . . J 2 246.265 195.724 241.649 1 872.92 ? O1B ADP 1001 D 1 
HETATM 3 O O2B ADP . . . J 2 248.563 194.949 242.396 1 872.92 ? O2B ADP 1001 D 1 
HETATM 4 O O3B ADP . . . J 2 248.181 197.359 241.996 1 872.92 ? O3B ADP 1001 D 1 
HETATM 5 P PA ADP . . . J 2 249.494 195.232 239.521 1 872.92 ? PA ADP 1001 D 1 
HETATM 6 O O1A ADP . . . J 2 249.602 195.331 238.02 1 872.92 ? O1A ADP 1001 D 1 
HETATM 7 O O2A ADP . . . J 2 249.616 193.869 240.156 1 872.92 ? O2A ADP 1001 D 1 
HETATM 8 O O3A ADP . . . J 2 248.125 195.87 240.069 1 872.92 ? O3A ADP 1001 D 1 
HETATM 9 O O5' ADP . . . J 2 250.722 196.211 239.841 1 872.92 ? O5' ADP 1001 D 1 
HETATM 10 C C5' ADP . . . J 2 251.366 196.54 241.055 1 872.92 ? C5' ADP 1001 D 1 
HETATM 11 C C4' ADP . . . J 2 252.854 196.906 240.896 1 872.92 ? C4' ADP 1001 D 1 
HETATM 12 O O4' ADP . . . J 2 253.656 196.108 241.774 1 872.92 ? O4' ADP 1001 D 1 
HETATM 13 C C3' ADP . . . J 2 253.449 196.722 239.489 1 872.92 ? C3' ADP 1001 D 1 
HETATM 14 O O3' ADP . . . J 2 254.016 197.972 239.102 1 872.92 ? O3' ADP 1001 D 1 
HETATM 15 C C2' ADP . . . J 2 254.542 195.688 239.643 1 872.92 ? C2' ADP 1001 D 1 
HETATM 16 O O2' ADP . . . J 2 255.709 195.921 238.861 1 872.92 ? O2' ADP 1001 D 1 
HETATM 17 C C1' ADP . . . J 2 254.857 195.694 241.122 1 872.92 ? C1' ADP 1001 D 1 
HETATM 18 N N9 ADP . . . J 2 255.318 194.382 241.642 1 872.92 ? N9 ADP 1001 D 1 
HETATM 19 C C8 ADP . . . J 2 255.052 193.909 242.872 1 872.92 ? C8 ADP 1001 D 1 
HETATM 20 N N7 ADP . . . J 2 255.628 192.697 243.056 1 872.92 ? N7 ADP 1001 D 1 
HETATM 21 C C5 ADP . . . J 2 256.284 192.38 241.939 1 872.92 ? C5 ADP 1001 D 1 
HETATM 22 C C6 ADP . . . J 2 257.102 191.244 241.479 1 872.92 ? C6 ADP 1001 D 1 
HETATM 23 N N6 ADP . . . J 2 257.357 190.158 242.25 1 872.92 ? N6 ADP 1001 D 1 
HETATM 24 N N1 ADP . . . J 2 257.593 191.338 240.231 1 872.92 ? N1 ADP 1001 D 1 
HETATM 25 C C2 ADP . . . J 2 257.37 192.378 239.417 1 872.92 ? C2 ADP 1001 D 1 
HETATM 26 N N3 ADP . . . J 2 256.645 193.435 239.781 1 872.92 ? N3 ADP 1001 D 1 
HETATM 27 C C4 ADP . . . J 2 256.081 193.495 241.004 1 872.92 ? C4 ADP 1001 D 1 
HETATM 28 H "H5'1" ADP . . . J 2 251.25 195.736 241.78 1 872.92 ? "H5'1" ADP 1001 D 1 
HETATM 29 H "H5'2" ADP . . . J 2 250.865 197.428 241.44 1 872.92 ? "H5'2" ADP 1001 D 1 
HETATM 30 H H4' ADP . . . J 2 252.969 197.964 241.173 1 872.92 ? H4' ADP 1001 D 1 
HETATM 31 H H3' ADP . . . J 2 252.8 196.397 238.675 1 872.92 ? H3' ADP 1001 D 1 
HETATM 32 H HO3' ADP . . . J 2 254.318 197.927 238.185 1 872.92 ? HO3' ADP 1001 D 1 
HETATM 33 H H2' ADP . . . J 2 254.103 194.718 239.369 1 872.92 ? H2' ADP 1001 D 1 
HETATM 34 H HO2' ADP . . . J 2 255.487 195.833 237.923 1 872.92 ? HO2' ADP 1001 D 1 
HETATM 35 H H1' ADP . . . J 2 255.639 196.446 241.299 1 872.92 ? H1' ADP 1001 D 1 
HETATM 36 H H8 ADP . . . J 2 254.456 194.424 243.613 1 872.92 ? H8 ADP 1001 D 1 
HETATM 37 H HN61 ADP . . . J 2 256.983 190.097 243.184 1 872.92 ? HN61 ADP 1001 D 1 
HETATM 38 H HN62 ADP . . . J 2 257.919 189.404 241.885 1 872.92 ? HN62 ADP 1001 D 1 
HETATM 39 H H2 ADP . . . J 2 257.805 192.363 238.429 1 872.92 ? H2 ADP 1001 D 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#