data_7NGQ
#
_model_server_result.job_id            L_mhU69WNc6krNLRMShsPA 
_model_server_result.datetime_utc      '2024-11-29 16:20:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ngq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1001}' 
#
_entry.id    7NGQ 
#
_exptl.entry_id    7NGQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NGQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C LYS 600 D LYS 722 1_555 E N ARG 389 E ARG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale2 D C ALA 602 D ALA 724 1_555 E C GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
covale ? covale3 D C ALA 602 D ALA 724 1_555 E N GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 D N TYR 603 D TYR 725 1_555 E N GLY 390 E GLY 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7NGQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 1001 1001 ADP ADP . 
H 2 ADP B 1 1001 1001 ADP ADP . 
I 2 ADP C 1 1001 1001 ADP ADP . 
J 2 ADP D 1 1001 1001 ADP ADP . 
K 2 ADP E 1 1001 1001 ADP ADP . 
L 2 ADP F 1 1001 1001 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 2 238.793 233.569 245.86 1 720.95 ? PB ADP 1001 E 1 
HETATM 2 O O1B ADP . . . K 2 237.871 234.75 245.801 1 720.95 ? O1B ADP 1001 E 1 
HETATM 3 O O2B ADP . . . K 2 240.056 233.834 246.629 1 720.95 ? O2B ADP 1001 E 1 
HETATM 4 O O3B ADP . . . K 2 238.103 232.251 246.085 1 720.95 ? O3B ADP 1001 E 1 
HETATM 5 P PA ADP . . . K 2 240.481 234.434 243.93 1 720.95 ? PA ADP 1001 E 1 
HETATM 6 O O1A ADP . . . K 2 240.504 234.641 242.446 1 720.95 ? O1A ADP 1001 E 1 
HETATM 7 O O2A ADP . . . K 2 241.734 233.902 244.592 1 720.95 ? O2A ADP 1001 E 1 
HETATM 8 O O3A ADP . . . K 2 239.272 233.481 244.347 1 720.95 ? O3A ADP 1001 E 1 
HETATM 9 O O5' ADP . . . K 2 239.969 235.906 244.344 1 720.95 ? O5' ADP 1001 E 1 
HETATM 10 C C5' ADP . . . K 2 240.238 236.767 245.435 1 720.95 ? C5' ADP 1001 E 1 
HETATM 11 C C4' ADP . . . K 2 240.327 238.227 244.96 1 720.95 ? C4' ADP 1001 E 1 
HETATM 12 O O4' ADP . . . K 2 241.29 238.939 245.738 1 720.95 ? O4' ADP 1001 E 1 
HETATM 13 C C3' ADP . . . K 2 240.787 238.448 243.52 1 720.95 ? C3' ADP 1001 E 1 
HETATM 14 O O3' ADP . . . K 2 239.975 239.485 242.987 1 720.95 ? O3' ADP 1001 E 1 
HETATM 15 C C2' ADP . . . K 2 242.21 238.939 243.619 1 720.95 ? C2' ADP 1001 E 1 
HETATM 16 O O2' ADP . . . K 2 242.553 239.899 242.633 1 720.95 ? O2' ADP 1001 E 1 
HETATM 17 C C1' ADP . . . K 2 242.292 239.588 244.956 1 720.95 ? C1' ADP 1001 E 1 
HETATM 18 N N9 ADP . . . K 2 243.626 239.332 245.511 1 720.95 ? N9 ADP 1001 E 1 
HETATM 19 C C8 ADP . . . K 2 243.893 238.549 246.553 1 720.95 ? C8 ADP 1001 E 1 
HETATM 20 N N7 ADP . . . K 2 245.205 238.548 246.856 1 720.95 ? N7 ADP 1001 E 1 
HETATM 21 C C5 ADP . . . K 2 245.794 239.384 246.021 1 720.95 ? C5 ADP 1001 E 1 
HETATM 22 C C6 ADP . . . K 2 247.164 239.847 245.813 1 720.95 ? C6 ADP 1001 E 1 
HETATM 23 N N6 ADP . . . K 2 248.192 239.417 246.567 1 720.95 ? N6 ADP 1001 E 1 
HETATM 24 N N1 ADP . . . K 2 247.35 240.722 244.829 1 720.95 ? N1 ADP 1001 E 1 
HETATM 25 C C2 ADP . . . K 2 246.336 241.159 244.065 1 720.95 ? C2 ADP 1001 E 1 
HETATM 26 N N3 ADP . . . K 2 245.065 240.774 244.206 1 720.95 ? N3 ADP 1001 E 1 
HETATM 27 C C4 ADP . . . K 2 244.742 239.918 245.165 1 720.95 ? C4 ADP 1001 E 1 
HETATM 28 H "H5'1" ADP . . . K 2 241.103 236.479 246.009 1 720.95 ? "H5'1" ADP 1001 E 1 
HETATM 29 H "H5'2" ADP . . . K 2 239.39 236.718 246.116 1 720.95 ? "H5'2" ADP 1001 E 1 
HETATM 30 H H4' ADP . . . K 2 239.337 238.695 245.081 1 720.95 ? H4' ADP 1001 E 1 
HETATM 31 H H3' ADP . . . K 2 240.76 237.597 242.835 1 720.95 ? H3' ADP 1001 E 1 
HETATM 32 H HO3' ADP . . . K 2 240.143 239.592 242.041 1 720.95 ? HO3' ADP 1001 E 1 
HETATM 33 H H2' ADP . . . K 2 242.9 238.083 243.594 1 720.95 ? H2' ADP 1001 E 1 
HETATM 34 H HO2' ADP . . . K 2 242.512 239.482 241.762 1 720.95 ? HO2' ADP 1001 E 1 
HETATM 35 H H1' ADP . . . K 2 242.09 240.665 244.874 1 720.95 ? H1' ADP 1001 E 1 
HETATM 36 H H8 ADP . . . K 2 243.164 237.947 247.078 1 720.95 ? H8 ADP 1001 E 1 
HETATM 37 H HN61 ADP . . . K 2 248.032 238.753 247.309 1 720.95 ? HN61 ADP 1001 E 1 
HETATM 38 H HN62 ADP . . . K 2 249.125 239.761 246.388 1 720.95 ? HN62 ADP 1001 E 1 
HETATM 39 H H2 ADP . . . K 2 246.557 241.866 243.286 1 720.95 ? H2 ADP 1001 E 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#