data_7NH4 # _model_server_result.job_id RmlP2qvF8ppaVnaXNrkMXA _model_server_result.datetime_utc '2024-11-22 19:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7NH4 # _exptl.entry_id 7NH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.673 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-[1-[[4-[5-(hydroxymethyl)-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NH4 _cell.length_a 70.76 _cell.length_b 70.95 _cell.length_c 91.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A SG CYS 310 A CYS 310 1_555 B C37 UCE . A UCE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? # _chem_comp.formula 'C34 H35 N5 O3' _chem_comp.formula_weight 561.673 _chem_comp.id UCE _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-[1-[[4-[5-(hydroxymethyl)-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C36 UCE sing 364 n n C36 C35 UCE sing 365 n n C39 C40 UCE doub 366 n y C39 C33 UCE sing 367 n y N34 C35 UCE sing 368 n n N34 C33 UCE sing 369 n n C40 C41 UCE sing 370 n y C35 O38 UCE doub 371 n n C33 C32 UCE doub 372 n y C41 N42 UCE sing 373 n n C41 C31 UCE doub 374 n y C32 C31 UCE sing 375 n y N42 C02 UCE sing 376 n n C31 N03 UCE sing 377 n n C02 N03 UCE sing 378 n n C02 O01 UCE doub 379 n n N03 C04 UCE sing 380 n n C04 C30 UCE sing 381 n n C04 C05 UCE sing 382 n n C30 C29 UCE sing 383 n n C29 N07 UCE sing 384 n n C05 C06 UCE sing 385 n n N07 C06 UCE sing 386 n n N07 C08 UCE sing 387 n n C08 C09 UCE sing 388 n n C10 C09 UCE doub 389 n y C10 C11 UCE sing 390 n y C09 C28 UCE sing 391 n y C11 C12 UCE doub 392 n y C28 C27 UCE doub 393 n y C12 C27 UCE sing 394 n y C12 C13 UCE sing 395 n n C26 C25 UCE doub 396 n y C26 C21 UCE sing 397 n y C25 C24 UCE sing 398 n y C13 N14 UCE doub 399 n y C13 C20 UCE sing 400 n y N14 C15 UCE sing 401 n y C20 C21 UCE sing 402 n n C20 C19 UCE doub 403 n y C21 C22 UCE doub 404 n y C24 C23 UCE doub 405 n y C15 C16 UCE doub 406 n y C19 C16 UCE sing 407 n y C16 C17 UCE sing 408 n n C22 C23 UCE sing 409 n y O18 C17 UCE sing 410 n n C10 H1 UCE sing 411 n n C15 H2 UCE sing 412 n n C17 H3 UCE sing 413 n n C17 H4 UCE sing 414 n n C22 H5 UCE sing 415 n n C24 H6 UCE sing 416 n n C26 H7 UCE sing 417 n n C28 H8 UCE sing 418 n n C04 H9 UCE sing 419 n n C05 H10 UCE sing 420 n n C05 H11 UCE sing 421 n n C06 H12 UCE sing 422 n n C06 H13 UCE sing 423 n n C08 H14 UCE sing 424 n n C08 H15 UCE sing 425 n n C11 H16 UCE sing 426 n n C19 H17 UCE sing 427 n n C23 H18 UCE sing 428 n n C25 H19 UCE sing 429 n n C27 H20 UCE sing 430 n n C29 H21 UCE sing 431 n n C29 H22 UCE sing 432 n n C30 H23 UCE sing 433 n n C30 H24 UCE sing 434 n n C32 H25 UCE sing 435 n n C36 H26 UCE sing 436 n n C36 H27 UCE sing 437 n n C37 H28 UCE sing 438 n n C37 H29 UCE sing 439 n n C37 H30 UCE sing 440 n n C39 H31 UCE sing 441 n n C40 H32 UCE sing 442 n n N34 H34 UCE sing 443 n n N42 H35 UCE sing 444 n n O18 H36 UCE sing 445 n n # _atom_sites.entry_id 7NH4 _atom_sites.fract_transf_matrix[1][1] 0.014132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UCE A 1 501 501 UCE LIG . C 3 ACT A 1 502 501 ACT ACT . D 3 ACT A 1 503 601 ACT ACT . E 4 HOH A 1 601 12 HOH HOH . E 4 HOH A 2 602 10 HOH HOH . E 4 HOH A 3 603 8 HOH HOH . E 4 HOH A 4 604 2 HOH HOH . E 4 HOH A 5 605 22 HOH HOH . E 4 HOH A 6 606 19 HOH HOH . E 4 HOH A 7 607 4 HOH HOH . E 4 HOH A 8 608 3 HOH HOH . E 4 HOH A 9 609 17 HOH HOH . E 4 HOH A 10 610 26 HOH HOH . E 4 HOH A 11 611 16 HOH HOH . E 4 HOH A 12 612 21 HOH HOH . E 4 HOH A 13 613 9 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UCE . . . B 2 3.299 2.725 10.511 1 56.33 ? C10 UCE 501 A 1 HETATM 2 C C13 UCE . . . B 2 3.042 1.186 14.07 1 58.89 ? C13 UCE 501 A 1 HETATM 3 C C15 UCE . . . B 2 1.419 -0.114 15.159 1 64.02 ? C15 UCE 501 A 1 HETATM 4 C C17 UCE . . . B 2 1.912 -1.447 17.298 1 74.39 ? C17 UCE 501 A 1 HETATM 5 C C20 UCE . . . B 2 4.01 0.83 15.043 1 58.55 ? C20 UCE 501 A 1 HETATM 6 C C21 UCE . . . B 2 5.479 1.317 15.046 1 54.95 ? C21 UCE 501 A 1 HETATM 7 C C22 UCE . . . B 2 6.003 1.842 16.228 1 52.85 ? C22 UCE 501 A 1 HETATM 8 C C24 UCE . . . B 2 8.132 2.196 15.158 1 52.82 ? C24 UCE 501 A 1 HETATM 9 C C26 UCE . . . B 2 6.292 1.22 13.912 1 51.92 ? C26 UCE 501 A 1 HETATM 10 C C28 UCE . . . B 2 4.26 4.267 12.107 1 56.03 ? C28 UCE 501 A 1 HETATM 11 C C02 UCE . . . B 2 -0.597 6.287 5.96 1 82.47 ? C02 UCE 501 A 1 HETATM 12 C C04 UCE . . . B 2 1.897 6.038 6.655 1 74.98 ? C04 UCE 501 A 1 HETATM 13 C C05 UCE . . . B 2 1.259 6.08 8.026 1 76.17 ? C05 UCE 501 A 1 HETATM 14 C C06 UCE . . . B 2 2.299 5.895 9.164 1 73.31 ? C06 UCE 501 A 1 HETATM 15 C C08 UCE . . . B 2 4.269 4.989 9.656 1 62.71 ? C08 UCE 501 A 1 HETATM 16 C C09 UCE . . . B 2 3.925 3.951 10.783 1 58.04 ? C09 UCE 501 A 1 HETATM 17 C C11 UCE . . . B 2 3.007 1.828 11.557 1 55.69 ? C11 UCE 501 A 1 HETATM 18 C C12 UCE . . . B 2 3.358 2.142 12.882 1 56.43 ? C12 UCE 501 A 1 HETATM 19 C C16 UCE . . . B 2 2.328 -0.508 16.146 1 67.72 ? C16 UCE 501 A 1 HETATM 20 C C19 UCE . . . B 2 3.636 -0.023 16.083 1 61.73 ? C19 UCE 501 A 1 HETATM 21 C C23 UCE . . . B 2 7.322 2.286 16.289 1 51.94 ? C23 UCE 501 A 1 HETATM 22 C C25 UCE . . . B 2 7.616 1.666 13.973 1 51.65 ? C25 UCE 501 A 1 HETATM 23 C C27 UCE . . . B 2 3.97 3.374 13.144 1 55.72 ? C27 UCE 501 A 1 HETATM 24 C C29 UCE . . . B 2 4.027 5.357 7.51 1 66.66 ? C29 UCE 501 A 1 HETATM 25 C C30 UCE . . . B 2 3.283 6.431 6.801 1 69.98 ? C30 UCE 501 A 1 HETATM 26 C C31 UCE . . . B 2 0.787 8.075 5.296 1 85.03 ? C31 UCE 501 A 1 HETATM 27 C C32 UCE . . . B 2 1.838 8.991 5.031 1 91.06 ? C32 UCE 501 A 1 HETATM 28 C C33 UCE . . . B 2 1.576 10.184 4.325 1 94.75 ? C33 UCE 501 A 1 HETATM 29 C C35 UCE . . . B 2 2.491 12.582 4.163 1 105.08 ? C35 UCE 501 A 1 HETATM 30 C C36 UCE . . . B 2 3.663 13.536 3.838 1 105.19 ? C36 UCE 501 A 1 HETATM 31 C C37 UCE . . . B 2 4.007 13.527 2.334 1 100 ? C37 UCE 501 A 1 HETATM 32 C C39 UCE . . . B 2 0.26 10.464 3.867 1 93.29 ? C39 UCE 501 A 1 HETATM 33 C C40 UCE . . . B 2 -0.788 9.559 4.128 1 90.99 ? C40 UCE 501 A 1 HETATM 34 C C41 UCE . . . B 2 -0.52 8.362 4.844 1 86.86 ? C41 UCE 501 A 1 HETATM 35 N N03 UCE . . . B 2 0.757 6.772 6.008 1 81.08 ? N03 UCE 501 A 1 HETATM 36 N N07 UCE . . . B 2 3.413 5.038 8.782 1 68.5 ? N07 UCE 501 A 1 HETATM 37 N N14 UCE . . . B 2 1.806 0.702 14.179 1 60.61 ? N14 UCE 501 A 1 HETATM 38 N N34 UCE . . . B 2 2.672 11.132 4.04 1 100.54 ? N34 UCE 501 A 1 HETATM 39 N N42 UCE . . . B 2 -1.403 7.249 5.251 1 84.76 ? N42 UCE 501 A 1 HETATM 40 O O01 UCE . . . B 2 -0.981 5.269 6.424 1 83.03 ? O01 UCE 501 A 1 HETATM 41 O O18 UCE . . . B 2 0.54 -1.735 17.181 1 85.82 ? O18 UCE 501 A 1 HETATM 42 O O38 UCE . . . B 2 1.447 13.028 4.508 1 108.46 ? O38 UCE 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 42 #