data_7NHG # _model_server_result.job_id V9V0yhFlG8DNVFQNPBnAaw _model_server_result.datetime_utc '2024-12-23 06:46:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7NHG # _exptl.entry_id 7NHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[[(3R)-3-Hydroxy-1-[6-(methylamino)pyrimidin-4-yl]piperidin-3-yl]methyl]-4-(piperidin-1-ylmethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NHG _cell.length_a 64.1 _cell.length_b 64.1 _cell.length_c 225.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H34 N6 O2' _chem_comp.formula_weight 438.566 _chem_comp.id UDQ _chem_comp.mon_nstd_flag . _chem_comp.name N-[[(3R)-3-Hydroxy-1-[6-(methylamino)pyrimidin-4-yl]piperidin-3-yl]methyl]-4-(piperidin-1-ylmethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}-[[(3~{R})-1-[6-(methylamino)pyrimidin-4-yl]-3-oxidanyl-piperidin-3-yl]methyl]-4-(piperidin-1-ylmethyl)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 N20 UDQ sing 364 n n C19 C18 UDQ sing 365 n n C25 N20 UDQ sing 366 n n C25 C24 UDQ sing 367 n n C26 C18 UDQ doub 368 n y C26 C27 UDQ sing 369 n y N20 C21 UDQ sing 370 n n C21 C22 UDQ sing 371 n n C18 C17 UDQ sing 372 n y C24 C23 UDQ sing 373 n n C27 C15 UDQ doub 374 n y C01 N02 UDQ sing 375 n n C23 C22 UDQ sing 376 n n C17 C16 UDQ doub 377 n y N02 C03 UDQ sing 378 n n C15 C16 UDQ sing 379 n y C15 C14 UDQ sing 380 n n C07 C08 UDQ sing 381 n n C07 N06 UDQ sing 382 n n C08 C09 UDQ sing 383 n n C04 C03 UDQ doub 384 n y C04 C05 UDQ sing 385 n y C03 N32 UDQ sing 386 n y C14 O28 UDQ doub 387 n n C14 N13 UDQ sing 388 n n C09 C11 UDQ sing 389 n n N06 C05 UDQ sing 390 n n N06 C10 UDQ sing 391 n n C05 N30 UDQ doub 392 n y N13 C12 UDQ sing 393 n n C10 C11 UDQ sing 394 n n N32 C31 UDQ doub 395 n y C11 C12 UDQ sing 396 n n C11 O29 UDQ sing 397 n n N30 C31 UDQ sing 398 n y C10 H1 UDQ sing 399 n n C10 H2 UDQ sing 400 n n C17 H3 UDQ sing 401 n n C21 H4 UDQ sing 402 n n C21 H5 UDQ sing 403 n n C22 H6 UDQ sing 404 n n C22 H7 UDQ sing 405 n n C24 H8 UDQ sing 406 n n C24 H9 UDQ sing 407 n n C26 H10 UDQ sing 408 n n C01 H11 UDQ sing 409 n n C01 H12 UDQ sing 410 n n C01 H13 UDQ sing 411 n n C04 H14 UDQ sing 412 n n C07 H15 UDQ sing 413 n n C07 H16 UDQ sing 414 n n C08 H17 UDQ sing 415 n n C08 H18 UDQ sing 416 n n C09 H19 UDQ sing 417 n n C09 H20 UDQ sing 418 n n C12 H21 UDQ sing 419 n n C12 H22 UDQ sing 420 n n C16 H23 UDQ sing 421 n n C19 H24 UDQ sing 422 n n C19 H25 UDQ sing 423 n n C23 H26 UDQ sing 424 n n C23 H27 UDQ sing 425 n n C25 H28 UDQ sing 426 n n C25 H29 UDQ sing 427 n n C27 H30 UDQ sing 428 n n C31 H31 UDQ sing 429 n n N02 H32 UDQ sing 430 n n N13 H33 UDQ sing 431 n n O29 H35 UDQ sing 432 n n # _atom_sites.entry_id 7NHG _atom_sites.fract_transf_matrix[1][1] 0.015601 _atom_sites.fract_transf_matrix[1][2] 0.009007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UDQ A 1 601 1 UDQ LIG . D 4 ACT B 1 401 2 ACT ACT . E 5 HOH A 1 701 105 HOH HOH . E 5 HOH A 2 702 43 HOH HOH . E 5 HOH A 3 703 38 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 46 HOH HOH . E 5 HOH A 6 706 113 HOH HOH . E 5 HOH A 7 707 72 HOH HOH . E 5 HOH A 8 708 19 HOH HOH . E 5 HOH A 9 709 14 HOH HOH . E 5 HOH A 10 710 115 HOH HOH . E 5 HOH A 11 711 22 HOH HOH . E 5 HOH A 12 712 41 HOH HOH . E 5 HOH A 13 713 12 HOH HOH . E 5 HOH A 14 714 73 HOH HOH . E 5 HOH A 15 715 65 HOH HOH . E 5 HOH A 16 716 31 HOH HOH . E 5 HOH A 17 717 75 HOH HOH . E 5 HOH A 18 718 3 HOH HOH . E 5 HOH A 19 719 9 HOH HOH . E 5 HOH A 20 720 78 HOH HOH . E 5 HOH A 21 721 35 HOH HOH . E 5 HOH A 22 722 69 HOH HOH . E 5 HOH A 23 723 21 HOH HOH . E 5 HOH A 24 724 77 HOH HOH . E 5 HOH A 25 725 62 HOH HOH . E 5 HOH A 26 726 30 HOH HOH . E 5 HOH A 27 727 58 HOH HOH . E 5 HOH A 28 728 93 HOH HOH . E 5 HOH A 29 729 34 HOH HOH . E 5 HOH A 30 730 98 HOH HOH . E 5 HOH A 31 731 91 HOH HOH . E 5 HOH A 32 732 109 HOH HOH . E 5 HOH A 33 733 89 HOH HOH . E 5 HOH A 34 734 100 HOH HOH . E 5 HOH A 35 735 60 HOH HOH . E 5 HOH A 36 736 85 HOH HOH . E 5 HOH A 37 737 63 HOH HOH . E 5 HOH A 38 738 81 HOH HOH . E 5 HOH A 39 739 101 HOH HOH . E 5 HOH A 40 740 111 HOH HOH . E 5 HOH A 41 741 99 HOH HOH . E 5 HOH A 42 742 104 HOH HOH . E 5 HOH A 43 743 97 HOH HOH . E 5 HOH A 44 744 116 HOH HOH . E 5 HOH A 45 745 117 HOH HOH . E 5 HOH A 46 746 103 HOH HOH . F 5 HOH B 1 501 15 HOH HOH . F 5 HOH B 2 502 80 HOH HOH . F 5 HOH B 3 503 29 HOH HOH . F 5 HOH B 4 504 32 HOH HOH . F 5 HOH B 5 505 16 HOH HOH . F 5 HOH B 6 506 33 HOH HOH . F 5 HOH B 7 507 23 HOH HOH . F 5 HOH B 8 508 53 HOH HOH . F 5 HOH B 9 509 24 HOH HOH . F 5 HOH B 10 510 42 HOH HOH . F 5 HOH B 11 511 20 HOH HOH . F 5 HOH B 12 512 36 HOH HOH . F 5 HOH B 13 513 10 HOH HOH . F 5 HOH B 14 514 6 HOH HOH . F 5 HOH B 15 515 55 HOH HOH . F 5 HOH B 16 516 7 HOH HOH . F 5 HOH B 17 517 1 HOH HOH . F 5 HOH B 18 518 8 HOH HOH . F 5 HOH B 19 519 52 HOH HOH . F 5 HOH B 20 520 47 HOH HOH . F 5 HOH B 21 521 2 HOH HOH . F 5 HOH B 22 522 11 HOH HOH . F 5 HOH B 23 523 25 HOH HOH . F 5 HOH B 24 524 44 HOH HOH . F 5 HOH B 25 525 13 HOH HOH . F 5 HOH B 26 526 28 HOH HOH . F 5 HOH B 27 527 50 HOH HOH . F 5 HOH B 28 528 27 HOH HOH . F 5 HOH B 29 529 45 HOH HOH . F 5 HOH B 30 530 26 HOH HOH . F 5 HOH B 31 531 66 HOH HOH . F 5 HOH B 32 532 5 HOH HOH . F 5 HOH B 33 533 74 HOH HOH . F 5 HOH B 34 534 39 HOH HOH . F 5 HOH B 35 535 95 HOH HOH . F 5 HOH B 36 536 61 HOH HOH . F 5 HOH B 37 537 88 HOH HOH . F 5 HOH B 38 538 94 HOH HOH . F 5 HOH B 39 539 70 HOH HOH . F 5 HOH B 40 540 76 HOH HOH . F 5 HOH B 41 541 54 HOH HOH . F 5 HOH B 42 542 56 HOH HOH . F 5 HOH B 43 543 37 HOH HOH . F 5 HOH B 44 544 40 HOH HOH . F 5 HOH B 45 545 79 HOH HOH . F 5 HOH B 46 546 51 HOH HOH . F 5 HOH B 47 547 48 HOH HOH . F 5 HOH B 48 548 64 HOH HOH . F 5 HOH B 49 549 18 HOH HOH . F 5 HOH B 50 550 68 HOH HOH . F 5 HOH B 51 551 59 HOH HOH . F 5 HOH B 52 552 71 HOH HOH . F 5 HOH B 53 553 112 HOH HOH . F 5 HOH B 54 554 57 HOH HOH . F 5 HOH B 55 555 17 HOH HOH . F 5 HOH B 56 556 86 HOH HOH . F 5 HOH B 57 557 49 HOH HOH . F 5 HOH B 58 558 107 HOH HOH . F 5 HOH B 59 559 108 HOH HOH . F 5 HOH B 60 560 82 HOH HOH . F 5 HOH B 61 561 92 HOH HOH . F 5 HOH B 62 562 90 HOH HOH . F 5 HOH B 63 563 83 HOH HOH . F 5 HOH B 64 564 96 HOH HOH . F 5 HOH B 65 565 110 HOH HOH . F 5 HOH B 66 566 87 HOH HOH . F 5 HOH B 67 567 67 HOH HOH . F 5 HOH B 68 568 114 HOH HOH . F 5 HOH B 69 569 84 HOH HOH . F 5 HOH B 70 570 106 HOH HOH . F 5 HOH B 71 571 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UDQ . . . C 3 -11.668 19.139 -11.053 1 49.76 ? C10 UDQ 601 A 1 HETATM 2 C C15 UDQ . . . C 3 -14.941 22.767 -13.222 1 63.72 ? C15 UDQ 601 A 1 HETATM 3 C C17 UDQ . . . C 3 -16.888 24 -13.868 1 61.55 ? C17 UDQ 601 A 1 HETATM 4 C C21 UDQ . . . C 3 -19.459 25.204 -15.077 1 59.78 ? C21 UDQ 601 A 1 HETATM 5 C C22 UDQ . . . C 3 -20.189 25.438 -13.735 1 57.2 ? C22 UDQ 601 A 1 HETATM 6 C C24 UDQ . . . C 3 -21.489 23.421 -14.566 1 45.73 ? C24 UDQ 601 A 1 HETATM 7 C C26 UDQ . . . C 3 -16.134 22.211 -15.295 1 57.07 ? C26 UDQ 601 A 1 HETATM 8 C C01 UDQ . . . C 3 -7.767 14.921 -14.159 1 55.02 ? C01 UDQ 601 A 1 HETATM 9 C C03 UDQ . . . C 3 -9.338 14.989 -12.147 1 45.97 ? C03 UDQ 601 A 1 HETATM 10 C C04 UDQ . . . C 3 -9.694 16.278 -12.426 1 45.62 ? C04 UDQ 601 A 1 HETATM 11 C C05 UDQ . . . C 3 -10.294 17.042 -11.473 1 47.95 ? C05 UDQ 601 A 1 HETATM 12 C C07 UDQ . . . C 3 -10.03 19.09 -12.999 1 48.71 ? C07 UDQ 601 A 1 HETATM 13 C C08 UDQ . . . C 3 -9.523 20.467 -12.619 1 52.33 ? C08 UDQ 601 A 1 HETATM 14 C C09 UDQ . . . C 3 -10.715 21.291 -12.09 1 52.63 ? C09 UDQ 601 A 1 HETATM 15 C C11 UDQ . . . C 3 -11.281 20.621 -10.822 1 52.82 ? C11 UDQ 601 A 1 HETATM 16 C C12 UDQ . . . C 3 -12.576 21.384 -10.351 1 53.28 ? C12 UDQ 601 A 1 HETATM 17 C C14 UDQ . . . C 3 -13.85 22.641 -12.121 1 63.31 ? C14 UDQ 601 A 1 HETATM 18 C C16 UDQ . . . C 3 -15.844 23.774 -12.957 1 59.64 ? C16 UDQ 601 A 1 HETATM 19 C C18 UDQ . . . C 3 -17.044 23.237 -15.025 1 55.21 ? C18 UDQ 601 A 1 HETATM 20 C C19 UDQ . . . C 3 -18.237 23.58 -15.959 1 53.58 ? C19 UDQ 601 A 1 HETATM 21 C C23 UDQ . . . C 3 -21.584 24.75 -13.833 1 49.1 ? C23 UDQ 601 A 1 HETATM 22 C C25 UDQ . . . C 3 -20.425 23.44 -15.683 1 50.42 ? C25 UDQ 601 A 1 HETATM 23 C C27 UDQ . . . C 3 -15.065 21.968 -14.381 1 62.79 ? C27 UDQ 601 A 1 HETATM 24 C C31 UDQ . . . C 3 -10.169 15.223 -9.975 1 45.02 ? C31 UDQ 601 A 1 HETATM 25 N N02 UDQ . . . C 3 -8.686 14.214 -13.221 1 51.1 ? N02 UDQ 601 A 1 HETATM 26 N N06 UDQ . . . C 3 -10.664 18.423 -11.825 1 45.86 ? N06 UDQ 601 A 1 HETATM 27 N N13 UDQ . . . C 3 -13.598 21.359 -11.406 1 57.04 ? N13 UDQ 601 A 1 HETATM 28 N N20 UDQ . . . C 3 -19.309 23.911 -15.207 1 58.88 ? N20 UDQ 601 A 1 HETATM 29 N N30 UDQ . . . C 3 -10.526 16.519 -10.249 1 46.04 ? N30 UDQ 601 A 1 HETATM 30 N N32 UDQ . . . C 3 -9.576 14.461 -10.938 1 46.51 ? N32 UDQ 601 A 1 HETATM 31 O O28 UDQ . . . C 3 -13.225 23.644 -11.81 1 63.18 ? O28 UDQ 601 A 1 HETATM 32 O O29 UDQ . . . C 3 -10.344 20.729 -9.815 1 54.4 ? O29 UDQ 601 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #