data_7NHP
#
_model_server_result.job_id            B4BJ381jEsSfsl5PWCKhmw 
_model_server_result.datetime_utc      '2024-11-04 23:29:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nhp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"WB","auth_seq_id":101}' 
#
_entry.id    7NHP 
#
_exptl.entry_id    7NHP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          28 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NHP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NHP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      28 
_struct_asym.id                             WB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 215 A HIS 215 1_555 MB FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc2 A NE2 HIS 272 A HIS 272 1_555 MB FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc3 D NE2 HIS 214 D HIS 214 1_555 MB FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc4 D OE2 GLU 241 D GLU 241 1_555 MB FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc5 D NE2 HIS 268 D HIS 268 1_555 MB FE FE . D FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc6 E NE2 HIS 23 E HIS 23 1_555 WB FE HEM . E HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 371 n n 
CHA C4D HEM doub 372 n n 
CHA HHA HEM sing 373 n n 
CHB C4A HEM sing 374 n n 
CHB C1B HEM doub 375 n n 
CHB HHB HEM sing 376 n n 
CHC C4B HEM sing 377 n n 
CHC C1C HEM doub 378 n n 
CHC HHC HEM sing 379 n n 
CHD C4C HEM doub 380 n n 
CHD C1D HEM sing 381 n n 
CHD HHD HEM sing 382 n n 
C1A C2A HEM doub 383 n y 
C1A NA HEM sing 384 n y 
C2A C3A HEM sing 385 n y 
C2A CAA HEM sing 386 n n 
C3A C4A HEM doub 387 n y 
C3A CMA HEM sing 388 n n 
C4A NA HEM sing 389 n y 
CMA HMA HEM sing 390 n n 
CMA HMAA HEM sing 391 n n 
CMA HMAB HEM sing 392 n n 
CAA CBA HEM sing 393 n n 
CAA HAA HEM sing 394 n n 
CAA HAAA HEM sing 395 n n 
CBA CGA HEM sing 396 n n 
CBA HBA HEM sing 397 n n 
CBA HBAA HEM sing 398 n n 
CGA O1A HEM doub 399 n n 
CGA O2A HEM sing 400 n n 
C1B C2B HEM sing 401 n n 
C1B NB HEM sing 402 n n 
C2B C3B HEM doub 403 n n 
C2B CMB HEM sing 404 n n 
C3B C4B HEM sing 405 n n 
C3B CAB HEM sing 406 n n 
C4B NB HEM doub 407 n n 
CMB HMB HEM sing 408 n n 
CMB HMBA HEM sing 409 n n 
CMB HMBB HEM sing 410 n n 
CAB CBB HEM doub 411 n n 
CAB HAB HEM sing 412 n n 
CBB HBB HEM sing 413 n n 
CBB HBBA HEM sing 414 n n 
C1C C2C HEM sing 415 n y 
C1C NC HEM sing 416 n y 
C2C C3C HEM doub 417 n y 
C2C CMC HEM sing 418 n n 
C3C C4C HEM sing 419 n y 
C3C CAC HEM sing 420 n n 
C4C NC HEM sing 421 n y 
CMC HMC HEM sing 422 n n 
CMC HMCA HEM sing 423 n n 
CMC HMCB HEM sing 424 n n 
CAC CBC HEM doub 425 n n 
CAC HAC HEM sing 426 n n 
CBC HBC HEM sing 427 n n 
CBC HBCA HEM sing 428 n n 
C1D C2D HEM sing 429 n n 
C1D ND HEM doub 430 n n 
C2D C3D HEM doub 431 n n 
C2D CMD HEM sing 432 n n 
C3D C4D HEM sing 433 n n 
C3D CAD HEM sing 434 n n 
C4D ND HEM sing 435 n n 
CMD HMD HEM sing 436 n n 
CMD HMDA HEM sing 437 n n 
CMD HMDB HEM sing 438 n n 
CAD CBD HEM sing 439 n n 
CAD HAD HEM sing 440 n n 
CAD HADA HEM sing 441 n n 
CBD CGD HEM sing 442 n n 
CBD HBD HEM sing 443 n n 
CBD HBDA HEM sing 444 n n 
CGD O1D HEM doub 445 n n 
CGD O2D HEM sing 446 n n 
O2A H2A HEM sing 447 n n 
O2D H2D HEM sing 448 n n 
FE NA HEM sing 449 n n 
FE NB HEM sing 450 n n 
FE NC HEM sing 451 n n 
FE ND HEM sing 452 n n 
#
_atom_sites.entry_id                     7NHP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 MN A 1 401 401 MN MN . 
T 20 CL A 1 402 403 CL CL . 
U 21 PHO A 1 403 365 PHO PHO . 
V 22 CLA A 1 404 362 CLA CLA . 
W 22 CLA A 1 405 363 CLA CLA . 
X 22 CLA A 1 406 364 CLA CLA . 
Y 22 CLA A 1 407 366 CLA CLA . 
Z 23 BCR A 1 408 369 BCR BCR . 
AA 24 LHG A 1 409 371 LHG LHG . 
BA 22 CLA B 1 601 511 CLA CLA . 
CA 22 CLA B 1 602 512 CLA CLA . 
DA 22 CLA B 1 603 513 CLA CLA . 
EA 22 CLA B 1 604 514 CLA CLA . 
FA 22 CLA B 1 605 515 CLA CLA . 
GA 22 CLA B 1 606 516 CLA CLA . 
HA 22 CLA B 1 607 517 CLA CLA . 
IA 22 CLA B 1 608 518 CLA CLA . 
JA 22 CLA B 1 609 519 CLA CLA . 
KA 22 CLA B 1 610 520 CLA CLA . 
LA 22 CLA B 1 611 521 CLA CLA . 
MA 22 CLA B 1 612 522 CLA CLA . 
NA 22 CLA B 1 613 523 CLA CLA . 
OA 22 CLA B 1 614 524 CLA CLA . 
PA 22 CLA B 1 615 525 CLA CLA . 
QA 22 CLA B 1 616 526 CLA CLA . 
RA 23 BCR B 1 617 527 BCR BCR . 
SA 23 BCR B 1 618 529 BCR BCR . 
TA 23 BCR B 1 619 530 BCR BCR . 
UA 25 LMG C 1 501 482 LMG LMG . 
VA 25 LMG C 1 502 492 LMG LMG . 
WA 22 CLA C 1 503 465 CLA CLA . 
XA 22 CLA C 1 504 466 CLA CLA . 
YA 22 CLA C 1 505 467 CLA CLA . 
ZA 22 CLA C 1 506 468 CLA CLA . 
AB 22 CLA C 1 507 469 CLA CLA . 
BB 22 CLA C 1 508 470 CLA CLA . 
CB 22 CLA C 1 509 471 CLA CLA . 
DB 22 CLA C 1 510 472 CLA CLA . 
EB 22 CLA C 1 511 473 CLA CLA . 
FB 22 CLA C 1 512 474 CLA CLA . 
GB 22 CLA C 1 513 475 CLA CLA . 
HB 22 CLA C 1 514 476 CLA CLA . 
IB 23 BCR C 1 515 477 BCR BCR . 
JB 23 BCR C 1 516 478 BCR BCR . 
KB 22 CLA C 1 517 483 CLA CLA . 
LB 23 BCR C 1 518 116 BCR BCR . 
MB 26 FE D 1 401 361 FE FE . 
NB 25 LMG D 1 402 373 LMG LMG . 
OB 25 LMG D 1 403 531 LMG LMG . 
PB 25 LMG D 1 404 359 LMG LMG . 
QB 25 LMG D 1 405 360 LMG LMG . 
RB 27 PL9 D 1 406 357 PL9 PL9 . 
SB 21 PHO D 1 407 355 PHO PHO . 
TB 22 CLA D 1 408 354 CLA CLA . 
UB 22 CLA D 1 409 356 CLA CLA . 
VB 23 BCR D 1 410 358 BCR BCR . 
WB 28 HEM E 1 101 85 HEM HEM . 
XB 23 BCR H 1 101 98 BCR BCR . 
YB 25 LMG I 1 101 220 LMG LMG . 
ZB 23 BCR K 1 101 112 BCR BCR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . WB 28 161.86 182.203 144.137 1 160.05 ? CHA HEM 101 E 1 
HETATM 2 C CHB HEM . . . WB 28 158.591 185.435 142.741 1 160.05 ? CHB HEM 101 E 1 
HETATM 3 C CHC HEM . . . WB 28 155.395 182.676 144.966 1 160.05 ? CHC HEM 101 E 1 
HETATM 4 C CHD HEM . . . WB 28 158.813 180.334 147.311 1 160.05 ? CHD HEM 101 E 1 
HETATM 5 C C1A HEM . . . WB 28 161.216 183.211 143.491 1 160.05 ? C1A HEM 101 E 1 
HETATM 6 C C2A HEM . . . WB 28 161.809 183.992 142.443 1 160.05 ? C2A HEM 101 E 1 
HETATM 7 C C3A HEM . . . WB 28 160.907 184.875 142.051 1 160.05 ? C3A HEM 101 E 1 
HETATM 8 C C4A HEM . . . WB 28 159.734 184.708 142.854 1 160.05 ? C4A HEM 101 E 1 
HETATM 9 C CMA HEM . . . WB 28 161.087 185.972 141.003 1 160.05 ? CMA HEM 101 E 1 
HETATM 10 C CAA HEM . . . WB 28 163.198 183.738 141.836 1 160.05 ? CAA HEM 101 E 1 
HETATM 11 C CBA HEM . . . WB 28 164.338 184.458 142.499 1 160.05 ? CBA HEM 101 E 1 
HETATM 12 C CGA HEM . . . WB 28 165.593 183.621 142.443 1 160.05 ? CGA HEM 101 E 1 
HETATM 13 O O1A HEM . . . WB 28 166.605 184.07 143.033 1 160.05 ? O1A HEM 101 E 1 
HETATM 14 O O2A HEM . . . WB 28 165.604 182.521 141.826 1 160.05 ? O2A HEM 101 E 1 
HETATM 15 C C1B HEM . . . WB 28 157.406 184.89 143.125 1 160.05 ? C1B HEM 101 E 1 
HETATM 16 C C2B HEM . . . WB 28 156.093 185.272 142.671 1 160.05 ? C2B HEM 101 E 1 
HETATM 17 C C3B HEM . . . WB 28 155.218 184.494 143.312 1 160.05 ? C3B HEM 101 E 1 
HETATM 18 C C4B HEM . . . WB 28 155.962 183.602 144.153 1 160.05 ? C4B HEM 101 E 1 
HETATM 19 C CMB HEM . . . WB 28 155.834 186.416 141.674 1 160.05 ? CMB HEM 101 E 1 
HETATM 20 C CAB HEM . . . WB 28 153.683 184.419 143.252 1 160.05 ? CAB HEM 101 E 1 
HETATM 21 C CBB HEM . . . WB 28 152.952 184.977 142.288 1 160.05 ? CBB HEM 101 E 1 
HETATM 22 C C1C HEM . . . WB 28 156.044 181.922 145.887 1 160.05 ? C1C HEM 101 E 1 
HETATM 23 C C2C HEM . . . WB 28 155.41 181.247 146.985 1 160.05 ? C2C HEM 101 E 1 
HETATM 24 C C3C HEM . . . WB 28 156.361 180.598 147.664 1 160.05 ? C3C HEM 101 E 1 
HETATM 25 C C4C HEM . . . WB 28 157.6 180.84 146.974 1 160.05 ? C4C HEM 101 E 1 
HETATM 26 C CMC HEM . . . WB 28 153.9 181.377 147.236 1 160.05 ? CMC HEM 101 E 1 
HETATM 27 C CAC HEM . . . WB 28 156.292 179.692 148.911 1 160.05 ? CAC HEM 101 E 1 
HETATM 28 C CBC HEM . . . WB 28 155.19 179.026 149.254 1 160.05 ? CBC HEM 101 E 1 
HETATM 29 C C1D HEM . . . WB 28 159.936 180.579 146.586 1 160.05 ? C1D HEM 101 E 1 
HETATM 30 C C2D HEM . . . WB 28 161.194 179.895 146.736 1 160.05 ? C2D HEM 101 E 1 
HETATM 31 C C3D HEM . . . WB 28 162.036 180.417 145.853 1 160.05 ? C3D HEM 101 E 1 
HETATM 32 C C4D HEM . . . WB 28 161.338 181.458 145.144 1 160.05 ? C4D HEM 101 E 1 
HETATM 33 C CMD HEM . . . WB 28 161.472 178.729 147.703 1 160.05 ? CMD HEM 101 E 1 
HETATM 34 C CAD HEM . . . WB 28 163.518 180.061 145.654 1 160.05 ? CAD HEM 101 E 1 
HETATM 35 C CBD HEM . . . WB 28 163.769 178.765 144.919 1 160.05 ? CBD HEM 101 E 1 
HETATM 36 C CGD HEM . . . WB 28 165.202 178.337 145.118 1 160.05 ? CGD HEM 101 E 1 
HETATM 37 O O1D HEM . . . WB 28 165.412 177.184 145.573 1 160.05 ? O1D HEM 101 E 1 
HETATM 38 O O2D HEM . . . WB 28 166.136 179.132 144.834 1 160.05 ? O2D HEM 101 E 1 
HETATM 39 N NA HEM . . . WB 28 159.941 183.665 143.724 1 160.05 ? NA HEM 101 E 1 
HETATM 40 N NB HEM . . . WB 28 157.297 183.862 144.028 1 160.05 ? NB HEM 101 E 1 
HETATM 41 N NC HEM . . . WB 28 157.383 181.657 145.897 1 160.05 ? NC HEM 101 E 1 
HETATM 42 N ND HEM . . . WB 28 160.051 181.536 145.608 1 160.05 ? ND HEM 101 E 1 
HETATM 43 FE FE HEM . . . WB 28 158.688 182.895 145.054 1 160.05 ? FE HEM 101 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#