data_7NIV
#
_model_server_result.job_id            Q66DxCDgaorisYkFTJPSBg 
_model_server_result.datetime_utc      '2024-11-26 06:29:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7niv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1301}' 
#
_entry.id    7NIV 
#
_exptl.entry_id    7NIV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              782.082 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 D CYS 24 1_555 A SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 135 D CYS 135 1_555 A SG CYS 195 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 25 E CYS 25 1_555 B SG CYS 99 E CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 153 E CYS 153 1_555 B SG CYS 209 E CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 D SG CYS 24 B CYS 24 1_555 D SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 D SG CYS 135 B CYS 135 1_555 D SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 E SG CYS 25 C CYS 25 1_555 E SG CYS 99 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 E SG CYS 160 C CYS 160 1_555 E SG CYS 216 C CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C44 H80 N O8 P' 
_chem_comp.formula_weight    782.082 
_chem_comp.id                DLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DI-LINOLEOYL-3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DLP sing 160 n n 
C1 O3P DLP sing 161 n n 
C1 HC11 DLP sing 162 n n 
C1 HC12 DLP sing 163 n n 
C2 C3 DLP sing 164 n n 
C2 O2 DLP sing 165 n n 
C2 HC2 DLP sing 166 n n 
C3 O3 DLP sing 167 n n 
C3 HC31 DLP sing 168 n n 
C3 HC32 DLP sing 169 n n 
C4 C5 DLP sing 170 n n 
C4 O4P DLP sing 171 n n 
C4 HC41 DLP sing 172 n n 
C4 HC42 DLP sing 173 n n 
C5 N DLP sing 174 n n 
C5 HC51 DLP sing 175 n n 
C5 HC52 DLP sing 176 n n 
C6 N DLP sing 177 n n 
C6 HC61 DLP sing 178 n n 
C6 HC62 DLP sing 179 n n 
C6 HC63 DLP sing 180 n n 
C7 N DLP sing 181 n n 
C7 HC71 DLP sing 182 n n 
C7 HC72 DLP sing 183 n n 
C7 HC73 DLP sing 184 n n 
C8 N DLP sing 185 n n 
C8 HC81 DLP sing 186 n n 
C8 HC82 DLP sing 187 n n 
C8 HC83 DLP sing 188 n n 
C11 C12 DLP sing 189 n n 
C11 O3 DLP sing 190 n n 
C11 O11 DLP doub 191 n n 
C12 C13 DLP sing 192 n n 
C12 H121 DLP sing 193 n n 
C12 H122 DLP sing 194 n n 
C13 C14 DLP sing 195 n n 
C13 H131 DLP sing 196 n n 
C13 H132 DLP sing 197 n n 
C14 C15 DLP sing 198 n n 
C14 H141 DLP sing 199 n n 
C14 H142 DLP sing 200 n n 
C15 C16 DLP sing 201 n n 
C15 H151 DLP sing 202 n n 
C15 H152 DLP sing 203 n n 
C16 C17 DLP sing 204 n n 
C16 H161 DLP sing 205 n n 
C16 H162 DLP sing 206 n n 
C17 C18 DLP sing 207 n n 
C17 H171 DLP sing 208 n n 
C17 H172 DLP sing 209 n n 
C18 C19 DLP sing 210 n n 
C18 H181 DLP sing 211 n n 
C18 H182 DLP sing 212 n n 
C19 C20 DLP doub 213 z n 
C19 H19 DLP sing 214 n n 
C20 C21 DLP sing 215 n n 
C20 H20 DLP sing 216 n n 
C21 C22 DLP sing 217 n n 
C21 H211 DLP sing 218 n n 
C21 H212 DLP sing 219 n n 
C22 C23 DLP doub 220 z n 
C22 H22 DLP sing 221 n n 
C23 C24 DLP sing 222 n n 
C23 H23 DLP sing 223 n n 
C24 C25 DLP sing 224 n n 
C24 H241 DLP sing 225 n n 
C24 H242 DLP sing 226 n n 
C25 C26 DLP sing 227 n n 
C25 H251 DLP sing 228 n n 
C25 H252 DLP sing 229 n n 
C26 C27 DLP sing 230 n n 
C26 H261 DLP sing 231 n n 
C26 H262 DLP sing 232 n n 
C27 C28 DLP sing 233 n n 
C27 H271 DLP sing 234 n n 
C27 H272 DLP sing 235 n n 
C28 H281 DLP sing 236 n n 
C28 H282 DLP sing 237 n n 
C28 H283 DLP sing 238 n n 
C31 C32 DLP sing 239 n n 
C31 O2 DLP sing 240 n n 
C31 O31 DLP doub 241 n n 
C32 C33 DLP sing 242 n n 
C32 H321 DLP sing 243 n n 
C32 H322 DLP sing 244 n n 
C33 C34 DLP sing 245 n n 
C33 H331 DLP sing 246 n n 
C33 H332 DLP sing 247 n n 
C34 C35 DLP sing 248 n n 
C34 H341 DLP sing 249 n n 
C34 H342 DLP sing 250 n n 
C35 C36 DLP sing 251 n n 
C35 H351 DLP sing 252 n n 
C35 H352 DLP sing 253 n n 
C36 C37 DLP sing 254 n n 
C36 H361 DLP sing 255 n n 
C36 H362 DLP sing 256 n n 
C37 C38 DLP sing 257 n n 
C37 H371 DLP sing 258 n n 
C37 H372 DLP sing 259 n n 
C38 C39 DLP sing 260 n n 
C38 H381 DLP sing 261 n n 
C38 H382 DLP sing 262 n n 
C39 C40 DLP doub 263 z n 
C39 H39 DLP sing 264 n n 
C40 C41 DLP sing 265 n n 
C40 H40 DLP sing 266 n n 
C41 C42 DLP sing 267 n n 
C41 H411 DLP sing 268 n n 
C41 H412 DLP sing 269 n n 
C42 C43 DLP doub 270 z n 
C42 H42 DLP sing 271 n n 
C43 C44 DLP sing 272 n n 
C43 H43 DLP sing 273 n n 
C44 C45 DLP sing 274 n n 
C44 H441 DLP sing 275 n n 
C44 H442 DLP sing 276 n n 
C45 C46 DLP sing 277 n n 
C45 H451 DLP sing 278 n n 
C45 H452 DLP sing 279 n n 
C46 C47 DLP sing 280 n n 
C46 H461 DLP sing 281 n n 
C46 H462 DLP sing 282 n n 
C47 C48 DLP sing 283 n n 
C47 H471 DLP sing 284 n n 
C47 H472 DLP sing 285 n n 
C48 H481 DLP sing 286 n n 
C48 H482 DLP sing 287 n n 
C48 H483 DLP sing 288 n n 
O1P P DLP doub 289 n n 
O2P P DLP sing 290 n n 
O3P P DLP sing 291 n n 
O4P P DLP sing 292 n n 
#
_atom_sites.entry_id                     7NIV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 DLP A 1 1301 1301 DLP LIG . 
G 7 CLR A 1 1302 1302 CLR CLR . 
H 7 CLR A 1 1303 1303 CLR CLR . 
I 7 CLR A 1 1304 1304 CLR CLR . 
J 7 CLR A 1 1305 1305 CLR CLR . 
K 7 CLR A 1 1306 1306 CLR CLR . 
L 7 CLR A 1 1307 1307 CLR CLR . 
M 7 CLR A 1 1308 1308 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DLP . . . F 6 131.231 133.833 146.24 1 6.97 ? C1 DLP 1301 A 1 
HETATM 2 C C2 DLP . . . F 6 130.665 132.72 145.34 1 6.97 ? C2 DLP 1301 A 1 
HETATM 3 C C3 DLP . . . F 6 129.599 133.226 144.352 1 6.97 ? C3 DLP 1301 A 1 
HETATM 4 C C4 DLP . . . F 6 130.909 137.238 144.615 1 6.97 ? C4 DLP 1301 A 1 
HETATM 5 C C5 DLP . . . F 6 130.699 137.105 143.084 1 6.97 ? C5 DLP 1301 A 1 
HETATM 6 C C6 DLP . . . F 6 129.38 139.11 143.505 1 6.97 ? C6 DLP 1301 A 1 
HETATM 7 C C7 DLP . . . F 6 128.428 137.276 142.433 1 6.97 ? C7 DLP 1301 A 1 
HETATM 8 C C8 DLP . . . F 6 130.055 138.568 141.324 1 6.97 ? C8 DLP 1301 A 1 
HETATM 9 C C11 DLP . . . F 6 127.323 133.475 145.006 1 6.97 ? C11 DLP 1301 A 1 
HETATM 10 C C12 DLP . . . F 6 126.947 132.522 146.175 1 6.97 ? C12 DLP 1301 A 1 
HETATM 11 C C13 DLP . . . F 6 125.801 131.542 145.812 1 6.97 ? C13 DLP 1301 A 1 
HETATM 12 C C14 DLP . . . F 6 126.182 130.076 146.198 1 6.97 ? C14 DLP 1301 A 1 
HETATM 13 C C15 DLP . . . F 6 124.995 129.113 145.966 1 6.97 ? C15 DLP 1301 A 1 
HETATM 14 C C16 DLP . . . F 6 124.749 128.773 144.462 1 6.97 ? C16 DLP 1301 A 1 
HETATM 15 C C17 DLP . . . F 6 123.545 129.536 143.864 1 6.97 ? C17 DLP 1301 A 1 
HETATM 16 C C18 DLP . . . F 6 122.925 128.824 142.619 1 6.97 ? C18 DLP 1301 A 1 
HETATM 17 C C19 DLP . . . F 6 121.408 129.103 142.601 1 6.97 ? C19 DLP 1301 A 1 
HETATM 18 C C20 DLP . . . F 6 120.744 129.313 141.44 1 6.97 ? C20 DLP 1301 A 1 
HETATM 19 C C21 DLP . . . F 6 121.451 129.286 140.076 1 6.97 ? C21 DLP 1301 A 1 
HETATM 20 C C22 DLP . . . F 6 121.454 127.828 139.577 1 6.97 ? C22 DLP 1301 A 1 
HETATM 21 C C23 DLP . . . F 6 120.824 127.426 138.459 1 6.97 ? C23 DLP 1301 A 1 
HETATM 22 C C24 DLP . . . F 6 120.911 125.929 138.086 1 6.97 ? C24 DLP 1301 A 1 
HETATM 23 C C25 DLP . . . F 6 120.815 125.711 136.561 1 6.97 ? C25 DLP 1301 A 1 
HETATM 24 C C26 DLP . . . F 6 120.345 124.289 136.217 1 6.97 ? C26 DLP 1301 A 1 
HETATM 25 C C27 DLP . . . F 6 119.695 123.598 137.418 1 6.97 ? C27 DLP 1301 A 1 
HETATM 26 C C28 DLP . . . F 6 118.669 122.533 137.01 1 6.97 ? C28 DLP 1301 A 1 
HETATM 27 C C31 DLP . . . F 6 131.488 131.615 143.35 1 6.97 ? C31 DLP 1301 A 1 
HETATM 28 C C32 DLP . . . F 6 130.792 130.232 143.25 1 6.97 ? C32 DLP 1301 A 1 
HETATM 29 C C33 DLP . . . F 6 131.688 129.114 143.835 1 6.97 ? C33 DLP 1301 A 1 
HETATM 30 C C34 DLP . . . F 6 130.915 127.776 143.916 1 6.97 ? C34 DLP 1301 A 1 
HETATM 31 C C35 DLP . . . F 6 129.404 128.048 144.035 1 6.97 ? C35 DLP 1301 A 1 
HETATM 32 C C36 DLP . . . F 6 128.621 126.717 144.104 1 6.97 ? C36 DLP 1301 A 1 
HETATM 33 C C37 DLP . . . F 6 127.761 126.661 145.387 1 6.97 ? C37 DLP 1301 A 1 
HETATM 34 C C38 DLP . . . F 6 128.213 125.473 146.291 1 6.97 ? C38 DLP 1301 A 1 
HETATM 35 C C39 DLP . . . F 6 127.102 124.411 146.274 1 6.97 ? C39 DLP 1301 A 1 
HETATM 36 C C40 DLP . . . F 6 125.95 124.646 145.613 1 6.97 ? C40 DLP 1301 A 1 
HETATM 37 C C41 DLP . . . F 6 124.883 123.54 145.639 1 6.97 ? C41 DLP 1301 A 1 
HETATM 38 C C42 DLP . . . F 6 123.639 123.964 144.845 1 6.97 ? C42 DLP 1301 A 1 
HETATM 39 C C43 DLP . . . F 6 122.534 123.254 145.054 1 6.97 ? C43 DLP 1301 A 1 
HETATM 40 C C44 DLP . . . F 6 121.253 123.597 144.315 1 6.97 ? C44 DLP 1301 A 1 
HETATM 41 C C45 DLP . . . F 6 121.23 122.852 142.972 1 6.97 ? C45 DLP 1301 A 1 
HETATM 42 C C46 DLP . . . F 6 120.125 123.406 142.072 1 6.97 ? C46 DLP 1301 A 1 
HETATM 43 C C47 DLP . . . F 6 120.636 124.643 141.316 1 6.97 ? C47 DLP 1301 A 1 
HETATM 44 C C48 DLP . . . F 6 119.928 125.904 141.825 1 6.97 ? C48 DLP 1301 A 1 
HETATM 45 N N DLP . . . F 6 129.64 138.012 142.593 1 6.97 ? N DLP 1301 A 1 
HETATM 46 O O2 DLP . . . F 6 131.763 132.166 144.636 1 6.97 ? O2 DLP 1301 A 1 
HETATM 47 O O3 DLP . . . F 6 128.627 134.042 144.994 1 6.97 ? O3 DLP 1301 A 1 
HETATM 48 O O11 DLP . . . F 6 126.551 133.725 144.146 1 6.97 ? O11 DLP 1301 A 1 
HETATM 49 O O31 DLP . . . F 6 131.797 132.189 142.361 1 6.97 ? O31 DLP 1301 A 1 
HETATM 50 O O1P DLP . . . F 6 131.351 136.792 147.337 1 6.97 ? O1P DLP 1301 A 1 
HETATM 51 O O2P DLP . . . F 6 128.9 136.627 147.67 1 6.97 ? O2P DLP 1301 A 1 
HETATM 52 O O3P DLP . . . F 6 130.211 134.458 147.025 1 6.97 ? O3P DLP 1301 A 1 
HETATM 53 O O4P DLP . . . F 6 129.861 136.512 145.26 1 6.97 ? O4P DLP 1301 A 1 
HETATM 54 P P DLP . . . F 6 130.08 136.131 146.879 1 6.97 ? P DLP 1301 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           440 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           54 
#